Wall clock time and date at job start Tue Mar 31 2020 13:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.47378 * 2 1 4 4 C 1.34223 * 117.00198 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00267 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99865 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46870 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.47095 * 54.99988 * 7 6 4 9 9 C 1.50700 * 109.46892 * 174.99853 * 7 6 4 10 10 H 1.07998 * 120.00009 * 239.99536 * 9 7 6 11 11 C 1.37878 * 120.00001 * 60.00124 * 9 7 6 12 12 N 1.31514 * 119.99825 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 120.00067 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47001 * 60.00025 * 13 11 9 15 15 H 1.48501 * 109.47174 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47404 * 300.00183 * 13 11 9 17 17 O 1.42903 * 109.47037 * 294.99842 * 7 6 4 18 18 C 1.42902 * 114.00129 * 150.00291 * 17 7 6 19 19 C 1.50690 * 109.47604 * 180.02562 * 18 17 7 20 20 N 1.31980 * 119.58866 * 270.02370 * 19 18 17 21 21 C 1.31944 * 121.86527 * 179.97438 * 20 19 18 22 22 C 1.37994 * 120.82068 * 359.71759 * 21 20 19 23 23 C 1.39245 * 119.09026 * 0.55368 * 22 21 20 24 24 O 1.35744 * 120.84713 * 179.73416 * 23 22 21 25 25 C 1.42903 * 116.99709 * 359.72012 * 24 23 22 26 26 C 1.37948 * 119.59074 * 89.99352 * 19 18 17 27 27 C 1.50703 * 120.45135 * 0.02562 * 26 19 18 28 28 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47520 * 300.00815 * 1 2 3 30 30 H 1.09007 * 109.46395 * 60.00248 * 1 2 3 31 31 H 1.08995 * 109.47509 * 239.99731 * 2 1 3 32 32 H 1.08998 * 109.46584 * 119.99573 * 2 1 3 33 33 H 1.09003 * 109.46821 * 59.99874 * 6 4 3 34 34 H 1.09003 * 109.46797 * 299.99392 * 6 4 3 35 35 H 0.97005 * 119.99563 * 179.97438 * 12 11 9 36 36 H 1.08999 * 109.47197 * 59.99295 * 18 17 7 37 37 H 1.09007 * 109.46750 * 300.00465 * 18 17 7 38 38 H 1.08004 * 119.59013 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.45528 * 180.31260 * 22 21 20 40 40 H 1.09002 * 109.47382 * 60.00137 * 25 24 23 41 41 H 1.09001 * 109.46938 * 300.00123 * 25 24 23 42 42 H 1.09004 * 109.46926 * 180.02562 * 25 24 23 43 43 H 1.08995 * 109.47451 * 270.01433 * 27 26 19 44 44 H 1.09000 * 109.47077 * 30.01960 * 27 26 19 45 45 H 1.09007 * 109.46792 * 150.01935 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 6 5.4487 2.8573 -0.0010 8 1 5.7807 2.2493 -0.8425 9 6 6.0244 4.2444 -0.1255 10 1 6.6592 4.4924 -0.9633 11 6 5.7407 5.1969 0.8302 12 7 4.9673 4.8950 1.8501 13 14 6.4549 6.9161 0.6763 14 1 5.9921 7.5325 -0.5931 15 1 6.0019 7.7447 1.8223 16 1 7.9378 6.8380 0.6767 17 8 5.8945 2.2643 1.2204 18 6 7.1177 1.5354 1.1001 19 6 7.4911 0.9559 2.4401 20 7 8.2438 1.6576 3.2665 21 6 8.5971 1.1943 4.4504 22 6 8.1830 -0.0520 4.8743 23 6 7.3924 -0.8263 4.0292 24 8 6.9696 -2.0594 4.4078 25 6 7.3780 -2.5173 5.6984 26 6 7.0414 -0.3009 2.7879 27 6 6.1822 -1.0948 1.8378 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.5851 3.4698 0.8888 34 1 3.5845 3.4692 -0.8913 35 1 4.7680 5.5650 2.5227 36 1 7.9078 2.2050 0.7604 37 1 6.9902 0.7284 0.3784 38 1 9.2146 1.7997 5.0974 39 1 8.4715 -0.4233 5.8466 40 1 7.0061 -1.8332 6.4612 41 1 8.4665 -2.5542 5.7432 42 1 6.9734 -3.5139 5.8752 43 1 5.1320 -0.8697 2.0230 44 1 6.4351 -0.8296 0.8112 45 1 6.3582 -2.1594 1.9919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223620068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:23 Heat of formation + Delta-G solvation = -154.717716 kcal Electronic energy + Delta-G solvation = -28381.289728 eV Core-core repulsion = 24364.060320 eV Total energy + Delta-G solvation = -4017.229408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.76086 -41.25627 -39.42437 -38.45203 -37.22605 -35.14072 -34.23391 -32.86923 -32.55043 -31.54770 -28.74282 -28.53905 -27.95342 -26.75439 -24.50658 -23.33821 -23.17995 -22.39803 -21.44734 -18.93816 -18.90143 -18.34270 -18.22010 -17.61062 -17.21212 -16.94437 -16.67637 -16.27892 -16.19250 -15.90741 -15.40521 -15.14478 -15.06045 -14.69122 -14.48335 -14.18871 -13.91595 -13.63866 -13.59863 -13.50400 -13.25056 -13.03258 -12.88224 -12.78490 -12.60805 -12.51344 -12.41834 -12.40305 -12.36588 -12.01997 -11.63795 -11.41192 -11.27533 -11.06337 -10.58861 -10.40127 -9.99525 -9.81120 -9.66107 -8.05229 -6.30199 0.04063 0.35754 1.44801 1.45409 1.48231 1.54002 1.95137 2.14672 2.46036 2.66476 3.16683 3.35875 3.64163 3.78105 3.87064 4.05609 4.06075 4.07277 4.20314 4.21946 4.35662 4.37731 4.39917 4.46300 4.52184 4.64680 4.67683 4.71418 4.73362 4.76954 4.85475 4.93881 4.96203 5.01488 5.12010 5.17163 5.17968 5.23524 5.50723 5.60267 5.63807 5.80833 6.16242 6.23313 6.62100 7.00318 7.07969 7.14642 7.49874 8.95442 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.005515 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.813881 B = 5075.868976 C = 7919.675682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.371 6.371 4 C 0.463 3.537 5 O -0.525 6.525 6 C -0.096 4.096 7 C 0.231 3.769 8 H 0.011 0.989 9 C -0.579 4.579 10 H 0.056 0.944 11 C 0.049 3.951 12 N -0.880 5.880 13 Si 0.949 3.051 14 H -0.263 1.263 15 H -0.283 1.283 16 H -0.280 1.280 17 O -0.371 6.371 18 C 0.125 3.875 19 C 0.151 3.849 20 N -0.524 5.524 21 C 0.116 3.884 22 C -0.249 4.249 23 C 0.157 3.843 24 O -0.322 6.322 25 C 0.014 3.986 26 C -0.167 4.167 27 C -0.079 4.079 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.262 0.738 36 H 0.035 0.965 37 H 0.058 0.942 38 H 0.186 0.814 39 H 0.178 0.822 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.125 0.875 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 -14.032 5.462 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.289 6.289 4 C 0.308 3.692 5 O -0.414 6.414 6 C -0.134 4.134 7 C 0.175 3.825 8 H 0.029 0.971 9 C -0.616 4.616 10 H 0.074 0.926 11 C -0.155 4.155 12 N -0.516 5.516 13 Si 0.774 3.226 14 H -0.188 1.188 15 H -0.209 1.209 16 H -0.206 1.206 17 O -0.290 6.290 18 C 0.047 3.953 19 C 0.016 3.984 20 N -0.237 5.237 21 C -0.041 4.041 22 C -0.270 4.270 23 C 0.104 3.896 24 O -0.233 6.233 25 C -0.080 4.080 26 C -0.170 4.170 27 C -0.136 4.136 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.202 0.798 39 H 0.195 0.805 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.143 0.857 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.966 -13.626 5.437 14.702 hybrid contribution 0.461 0.259 0.231 0.577 sum -0.505 -13.366 5.668 14.527 Atomic orbital electron populations 1.21804 0.90301 1.04319 1.03512 1.23222 0.97186 0.79859 1.02027 1.86552 1.24687 1.33418 1.84265 1.24469 0.80204 0.93513 0.71003 1.90524 1.60713 1.43690 1.46458 1.21635 0.96706 0.89065 1.05978 1.19330 0.89117 0.91212 0.82889 0.97075 1.21675 1.32968 0.96974 1.10023 0.92601 1.25602 0.94123 1.01725 0.94077 1.70010 1.35577 1.34805 1.11231 0.85784 0.78699 0.80111 0.77996 1.18767 1.20853 1.20558 1.88020 1.36985 1.68800 1.35205 1.20807 0.89179 0.94079 0.91192 1.20768 0.92485 0.89655 0.95521 1.67503 1.14348 1.36329 1.05555 1.23102 0.95854 0.93473 0.91675 1.22485 1.04199 0.97322 1.02963 1.19146 0.92496 0.85464 0.92524 1.86041 1.70941 1.28492 1.37858 1.23486 1.01793 1.01759 0.80932 1.20288 1.03761 0.96819 0.96140 1.20386 0.97474 0.98675 0.97105 0.87850 0.91807 0.91137 0.91300 0.92340 0.86895 0.87599 0.92899 0.94703 0.92407 0.79756 0.80473 0.91530 0.90866 0.85709 0.92734 0.91727 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 10.29 71.98 0.74 -2.14 16 2 C 0.05 1.46 6.19 71.98 0.45 1.90 16 3 O -0.37 -13.96 10.22 -51.35 -0.52 -14.48 16 4 C 0.46 20.22 7.84 71.24 0.56 20.77 16 5 O -0.52 -23.89 15.11 27.03 0.41 -23.48 16 6 C -0.10 -4.59 5.22 29.85 0.16 -4.43 16 7 C 0.23 12.09 1.82 29.85 0.05 12.14 16 8 H 0.01 0.58 7.60 -2.39 -0.02 0.56 16 9 C -0.58 -32.12 8.90 25.60 0.23 -31.89 16 10 H 0.06 3.05 7.81 -2.91 -0.02 3.02 16 11 C 0.05 2.70 5.24 84.65 0.44 3.14 16 12 N -0.88 -50.46 10.93 21.45 0.23 -50.23 16 13 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 14 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 O -0.37 -20.17 8.60 -135.19 -1.16 -21.33 16 18 C 0.13 6.04 5.62 71.23 0.40 6.44 16 19 C 0.15 6.70 6.41 42.46 0.27 6.97 16 20 N -0.52 -22.59 10.27 -184.13 -1.89 -24.48 16 21 C 0.12 3.75 11.17 84.62 0.95 4.70 16 22 C -0.25 -6.75 9.11 22.45 0.20 -6.54 16 23 C 0.16 4.99 6.70 22.76 0.15 5.14 16 24 O -0.32 -8.45 9.68 -90.68 -0.88 -9.33 16 25 C 0.01 0.21 9.84 113.37 1.12 1.32 16 26 C -0.17 -6.45 5.91 -19.68 -0.12 -6.56 16 27 C -0.08 -2.88 9.42 71.24 0.67 -2.21 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 32 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 33 H 0.11 6.00 6.22 -2.39 -0.01 5.98 16 34 H 0.11 4.64 8.14 -2.39 -0.02 4.62 16 35 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 36 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 2.62 5.88 -2.38 -0.01 2.60 16 38 H 0.19 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.18 3.08 6.47 -2.91 -0.02 3.06 16 40 H 0.07 0.87 7.70 -2.39 -0.02 0.85 16 41 H 0.07 0.84 7.72 -2.39 -0.02 0.82 16 42 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.05 2.17 8.08 -2.39 -0.02 2.15 16 44 H 0.06 2.43 5.95 -2.39 -0.01 2.42 16 45 H 0.08 2.44 7.62 -2.38 -0.02 2.42 16 Total: -1.00 -72.29 377.87 5.48 -66.81 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.99 Total: 22.11 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.27 Total: 8.75 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -1.66 Total: -74.71 kcal Atomic # 8 Polarization: -66.47 SS G_CDS: -2.16 Total: -68.63 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -72.29 5.48 -66.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223620068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.903 kcal (2) G-P(sol) polarization free energy of solvation -72.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds