Wall clock time and date at job start Tue Mar 31 2020 14:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35993 * 116.99891 * 2 1 4 4 C 1.38637 * 120.01719 * 0.02562 * 3 2 1 5 5 C 1.38669 * 120.03318 * 180.02562 * 4 3 2 6 6 O 1.35970 * 119.96522 * 179.97438 * 5 4 3 7 7 C 1.42900 * 117.00210 * 185.73169 * 6 5 4 8 8 C 1.53516 * 114.17200 * 156.78767 * 7 6 5 9 9 N 1.47481 * 87.92871 * 87.81412 * 8 7 6 10 10 C 1.46902 * 110.99431 * 138.70348 * 9 8 7 11 11 C 1.50704 * 109.46810 * 170.00402 * 10 9 8 12 12 H 1.07994 * 119.99964 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99653 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99382 * 179.97438 * 13 11 10 15 15 Si 1.86790 * 120.00164 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47089 * 269.99425 * 15 13 11 17 17 H 1.48505 * 109.47465 * 29.99844 * 15 13 11 18 18 H 1.48507 * 109.47206 * 149.99793 * 15 13 11 19 19 C 1.47478 * 87.83637 * 27.01377 * 9 8 7 20 20 C 1.38668 * 120.06917 * 0.24603 * 5 4 3 21 21 C 1.38643 * 120.03617 * 359.50050 * 20 5 4 22 22 O 1.35991 * 120.01721 * 180.27401 * 21 20 5 23 23 C 1.42897 * 116.99903 * 0.22774 * 22 21 20 24 24 C 1.38962 * 119.96328 * 0.50164 * 21 20 5 25 25 O 1.36173 * 120.03475 * 179.72919 * 24 21 20 26 26 C 1.42902 * 116.99496 * 270.02029 * 25 24 21 27 27 H 1.09003 * 109.47237 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47117 * 299.99584 * 1 2 3 29 29 H 1.08993 * 109.47092 * 59.99938 * 1 2 3 30 30 H 1.07999 * 119.98527 * 359.97438 * 4 3 2 31 31 H 1.09000 * 113.25297 * 23.84485 * 7 6 5 32 32 H 1.09005 * 113.47620 * 333.05384 * 8 7 6 33 33 H 1.09001 * 113.53120 * 202.59234 * 8 7 6 34 34 H 1.08996 * 109.47291 * 50.00627 * 10 9 8 35 35 H 1.09000 * 109.47144 * 290.00040 * 10 9 8 36 36 H 0.96994 * 119.99520 * 180.02562 * 14 13 11 37 37 H 1.08999 * 113.48077 * 87.74658 * 19 9 8 38 38 H 1.08997 * 113.47712 * 218.22228 * 19 9 8 39 39 H 1.08001 * 119.97687 * 179.72325 * 20 5 4 40 40 H 1.08995 * 109.47325 * 60.00686 * 23 22 21 41 41 H 1.09003 * 109.46981 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47050 * 300.00033 * 23 22 21 43 43 H 1.09003 * 109.46974 * 60.00297 * 26 25 24 44 44 H 1.09001 * 109.46742 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.47110 * 300.00209 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2916 2.3746 0.0005 5 6 1.9208 3.6104 0.0000 6 8 1.1792 4.7500 0.0000 7 6 1.8872 5.9848 -0.1277 8 6 1.0393 7.1419 -0.6745 9 7 0.6362 7.4320 0.7142 10 6 0.6190 8.8792 0.9657 11 6 -0.0264 9.1493 2.3005 12 1 -0.3872 8.3281 2.9019 13 6 -0.1552 10.4449 2.7544 14 7 -0.7189 10.6806 3.9190 15 14 0.4696 11.8653 1.7145 16 1 1.8854 12.1479 2.0620 17 1 0.3750 11.5054 0.2768 18 1 -0.3551 13.0719 1.9780 19 6 1.9123 6.8350 1.1502 20 6 3.3055 3.6850 -0.0062 21 6 4.0631 2.5239 -0.0015 22 8 5.4210 2.5976 -0.0019 23 6 5.9998 3.9041 -0.0024 24 6 3.4341 1.2848 -0.0010 25 8 4.1768 0.1434 -0.0019 26 6 4.5297 -0.3998 -1.2756 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.2131 2.3181 0.0005 31 1 2.8583 5.8760 -0.6107 32 1 0.2140 6.8144 -1.3068 33 1 1.6299 7.9365 -1.1304 34 1 0.0513 9.3778 0.1802 35 1 1.6407 9.2590 0.9727 36 1 -0.8098 11.5921 4.2381 37 1 2.7368 7.5473 1.1815 38 1 1.8270 6.2475 2.0643 39 1 3.7939 4.6483 -0.0112 40 1 5.6776 4.4446 0.8876 41 1 7.0865 3.8201 -0.0023 42 1 5.6768 4.4442 -0.8924 43 1 5.1155 0.3313 -1.8328 44 1 5.1188 -1.3059 -1.1335 45 1 3.6235 -0.6395 -1.8321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225313321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:58 Heat of formation + Delta-G solvation = -60.810568 kcal Electronic energy + Delta-G solvation = -27586.422633 eV Core-core repulsion = 23573.265344 eV Total energy + Delta-G solvation = -4013.157289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17903 -40.10146 -39.21915 -38.02533 -37.74078 -35.23145 -32.82609 -30.35528 -29.86762 -29.53604 -28.11468 -27.27758 -26.33627 -25.77934 -25.46822 -22.68137 -22.37428 -21.25306 -20.00875 -19.05999 -17.62673 -17.32316 -16.91778 -16.77583 -16.65941 -16.44171 -15.73787 -15.51534 -15.23323 -15.06388 -14.95367 -14.67264 -14.65322 -13.94191 -13.83607 -13.61837 -13.27900 -12.92891 -12.57086 -12.48633 -12.21413 -12.10616 -12.00340 -11.86277 -11.75049 -11.38261 -11.28303 -11.21879 -10.69880 -10.58022 -10.14536 -10.02084 -9.90851 -9.80616 -9.41836 -8.63449 -8.45391 -8.09895 -8.00650 -6.09755 -4.07738 1.10981 1.15542 2.57077 2.96774 3.21237 3.29473 3.29689 3.30280 3.42008 3.82092 4.35526 4.46051 4.52310 4.66797 4.72752 4.83395 4.87769 4.92432 4.98539 4.99230 5.02828 5.13908 5.19652 5.25779 5.26610 5.28134 5.30056 5.32669 5.54535 5.57110 5.61286 5.83417 5.92857 5.97680 6.04558 6.09972 6.18021 6.35322 6.58146 6.78641 7.01438 7.21540 7.31776 7.59081 7.60922 7.73838 8.57234 9.01627 9.50608 11.03673 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.002741 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.188998 B =10211.855901 C =11103.857749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.300 6.300 3 C 0.187 3.813 4 C -0.269 4.269 5 C 0.214 3.786 6 O -0.267 6.267 7 C 0.044 3.956 8 C -0.003 4.003 9 N -0.443 5.443 10 C 0.125 3.875 11 C -0.508 4.508 12 H 0.081 0.919 13 C 0.067 3.933 14 N -0.898 5.898 15 Si 0.875 3.125 16 H -0.277 1.277 17 H -0.268 1.268 18 H -0.284 1.284 19 C -0.006 4.006 20 C -0.325 4.325 21 C 0.188 3.812 22 O -0.301 6.301 23 C 0.023 3.977 24 C -0.017 4.017 25 O -0.309 6.309 26 C 0.033 3.967 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.145 0.855 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.029 0.971 35 H -0.004 1.004 36 H 0.264 0.736 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.144 0.856 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.088 0.912 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.059 -19.367 -13.300 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.212 6.212 3 C 0.140 3.860 4 C -0.288 4.288 5 C 0.167 3.833 6 O -0.178 6.178 7 C -0.013 4.013 8 C -0.132 4.132 9 N -0.166 5.166 10 C -0.002 4.002 11 C -0.546 4.546 12 H 0.099 0.901 13 C -0.134 4.134 14 N -0.537 5.537 15 Si 0.703 3.297 16 H -0.203 1.203 17 H -0.193 1.193 18 H -0.210 1.210 19 C -0.136 4.136 20 C -0.344 4.344 21 C 0.141 3.859 22 O -0.213 6.213 23 C -0.072 4.072 24 C -0.062 4.062 25 O -0.225 6.225 26 C -0.061 4.061 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.162 0.838 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.014 0.986 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.161 0.839 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.417 -19.826 -12.723 25.758 hybrid contribution 0.873 2.030 -0.908 2.389 sum 11.290 -17.796 -13.631 25.099 Atomic orbital electron populations 1.23181 0.77813 1.04139 1.02117 1.86153 1.21729 1.25515 1.87830 1.18534 0.90228 0.84390 0.92849 1.20212 1.00982 0.88891 1.18729 1.18433 0.88928 0.86549 0.89421 1.86228 1.34211 1.11771 1.85635 1.23725 0.95545 0.82355 0.99684 1.24071 0.98881 0.94265 0.96013 1.69068 1.28155 1.15962 1.03391 1.20775 0.95656 0.84710 0.99033 1.20945 1.38385 0.93953 1.01300 0.90113 1.24937 0.95019 0.98559 0.94916 1.69896 1.44078 1.20649 1.19095 0.86863 0.79079 0.82552 0.81243 1.20296 1.19278 1.20991 1.24285 0.94186 0.97067 0.98054 1.21154 0.93743 0.98574 1.20937 1.18616 0.82692 0.92071 0.92498 1.86144 1.16507 1.30877 1.87785 1.23165 0.99220 0.82986 1.01841 1.16737 0.86274 0.84677 1.18505 1.86220 1.70126 1.37771 1.28374 1.22966 0.99358 0.98327 0.85499 0.87987 0.91944 0.92241 0.83781 0.89480 0.89261 0.90375 0.95256 0.98596 0.92589 0.90422 0.89335 0.83859 0.92048 0.87903 0.92495 0.94009 0.89326 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.57 10.27 -34.38 -0.35 -3.92 16 3 C 0.19 2.46 6.69 -39.16 -0.26 2.20 16 4 C -0.27 -3.51 8.97 -39.28 -0.35 -3.86 16 5 C 0.21 3.00 6.68 -39.26 -0.26 2.73 16 6 O -0.27 -4.17 10.19 -19.64 -0.20 -4.37 16 7 C 0.04 0.63 4.06 -26.20 -0.11 0.52 16 8 C 0.00 -0.05 7.52 -7.54 -0.06 -0.10 16 9 N -0.44 -9.22 6.32 -246.11 -1.55 -10.78 16 10 C 0.13 2.98 3.64 -4.97 -0.02 2.96 16 11 C -0.51 -14.58 9.94 -34.44 -0.34 -14.92 16 12 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 15 Si 0.88 21.10 27.47 -169.99 -4.67 16.44 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 C -0.01 -0.11 7.56 -7.55 -0.06 -0.17 16 20 C -0.32 -4.10 8.02 -39.27 -0.31 -4.42 16 21 C 0.19 2.47 6.69 -39.16 -0.26 2.21 16 22 O -0.30 -3.60 10.27 -34.37 -0.35 -3.95 16 23 C 0.02 0.18 9.81 101.05 0.99 1.17 16 24 C -0.02 -0.23 5.75 -39.04 -0.22 -0.46 16 25 O -0.31 -4.28 9.98 -45.62 -0.46 -4.74 16 26 C 0.03 0.34 11.13 101.05 1.13 1.46 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 29 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 30 H 0.14 1.68 6.29 -52.49 -0.33 1.35 16 31 H 0.09 0.98 5.89 -51.93 -0.31 0.68 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.10 7.91 -51.93 -0.41 0.68 16 34 H 0.03 0.70 7.14 -51.93 -0.37 0.33 16 35 H 0.00 -0.08 6.73 -51.93 -0.35 -0.43 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.08 1.24 7.42 -51.93 -0.39 0.86 16 38 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.14 1.55 4.10 -52.49 -0.22 1.34 16 40 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 43 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 370.44 15.07 5.58 5.58 Total: -1.00 -34.53 370.44 -6.98 -41.51 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.51 Total: -1.28 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 0.75 Total: -7.65 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.78 Total: -37.62 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -1.36 Total: -16.98 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.53 -6.98 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225313321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.299 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds