Wall clock time and date at job start Tue Mar 31 2020 14:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35993 * 116.99891 * 2 1 4 4 C 1.38637 * 120.01719 * 0.02562 * 3 2 1 5 5 C 1.38669 * 120.03318 * 180.02562 * 4 3 2 6 6 O 1.35970 * 119.96522 * 179.97438 * 5 4 3 7 7 C 1.42900 * 117.00210 * 185.73169 * 6 5 4 8 8 C 1.53516 * 114.17200 * 156.78767 * 7 6 5 9 9 N 1.47481 * 87.92871 * 87.81412 * 8 7 6 10 10 C 1.46902 * 110.99431 * 138.70348 * 9 8 7 11 11 C 1.50704 * 109.46810 * 170.00402 * 10 9 8 12 12 H 1.07994 * 119.99964 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99653 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99382 * 179.97438 * 13 11 10 15 15 Si 1.86790 * 120.00164 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47089 * 269.99425 * 15 13 11 17 17 H 1.48505 * 109.47465 * 29.99844 * 15 13 11 18 18 H 1.48507 * 109.47206 * 149.99793 * 15 13 11 19 19 C 1.47478 * 87.83637 * 27.01377 * 9 8 7 20 20 C 1.38668 * 120.06917 * 0.24603 * 5 4 3 21 21 C 1.38643 * 120.03617 * 359.50050 * 20 5 4 22 22 O 1.35991 * 120.01721 * 180.27401 * 21 20 5 23 23 C 1.42897 * 116.99903 * 0.22774 * 22 21 20 24 24 C 1.38962 * 119.96328 * 0.50164 * 21 20 5 25 25 O 1.36173 * 120.03475 * 179.72919 * 24 21 20 26 26 C 1.42902 * 116.99496 * 270.02029 * 25 24 21 27 27 H 1.09003 * 109.47237 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47117 * 299.99584 * 1 2 3 29 29 H 1.08993 * 109.47092 * 59.99938 * 1 2 3 30 30 H 1.07999 * 119.98527 * 359.97438 * 4 3 2 31 31 H 1.09000 * 113.25297 * 23.84485 * 7 6 5 32 32 H 1.09005 * 113.47620 * 333.05384 * 8 7 6 33 33 H 1.09001 * 113.53120 * 202.59234 * 8 7 6 34 34 H 1.08996 * 109.47291 * 50.00627 * 10 9 8 35 35 H 1.09000 * 109.47144 * 290.00040 * 10 9 8 36 36 H 0.96994 * 119.99520 * 180.02562 * 14 13 11 37 37 H 1.08999 * 113.48077 * 87.74658 * 19 9 8 38 38 H 1.08997 * 113.47712 * 218.22228 * 19 9 8 39 39 H 1.08001 * 119.97687 * 179.72325 * 20 5 4 40 40 H 1.08995 * 109.47325 * 60.00686 * 23 22 21 41 41 H 1.09003 * 109.46981 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47050 * 300.00033 * 23 22 21 43 43 H 1.09003 * 109.46974 * 60.00297 * 26 25 24 44 44 H 1.09001 * 109.46742 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.47110 * 300.00209 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2916 2.3746 0.0005 5 6 1.9208 3.6104 0.0000 6 8 1.1792 4.7500 0.0000 7 6 1.8872 5.9848 -0.1277 8 6 1.0393 7.1419 -0.6745 9 7 0.6362 7.4320 0.7142 10 6 0.6190 8.8792 0.9657 11 6 -0.0264 9.1493 2.3005 12 1 -0.3872 8.3281 2.9019 13 6 -0.1552 10.4449 2.7544 14 7 -0.7189 10.6806 3.9190 15 14 0.4696 11.8653 1.7145 16 1 1.8854 12.1479 2.0620 17 1 0.3750 11.5054 0.2768 18 1 -0.3551 13.0719 1.9780 19 6 1.9123 6.8350 1.1502 20 6 3.3055 3.6850 -0.0062 21 6 4.0631 2.5239 -0.0015 22 8 5.4210 2.5976 -0.0019 23 6 5.9998 3.9041 -0.0024 24 6 3.4341 1.2848 -0.0010 25 8 4.1768 0.1434 -0.0019 26 6 4.5297 -0.3998 -1.2756 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.2131 2.3181 0.0005 31 1 2.8583 5.8760 -0.6107 32 1 0.2140 6.8144 -1.3068 33 1 1.6299 7.9365 -1.1304 34 1 0.0513 9.3778 0.1802 35 1 1.6407 9.2590 0.9727 36 1 -0.8098 11.5921 4.2381 37 1 2.7368 7.5473 1.1815 38 1 1.8270 6.2475 2.0643 39 1 3.7939 4.6483 -0.0112 40 1 5.6776 4.4446 0.8876 41 1 7.0865 3.8201 -0.0023 42 1 5.6768 4.4442 -0.8924 43 1 5.1155 0.3313 -1.8328 44 1 5.1188 -1.3059 -1.1335 45 1 3.6235 -0.6395 -1.8321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225313321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:57 Heat of formation + Delta-G solvation = -87.270032 kcal Electronic energy + Delta-G solvation = -27587.570001 eV Core-core repulsion = 23573.265344 eV Total energy + Delta-G solvation = -4014.304657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.18196 -41.27814 -40.06459 -39.19708 -38.66442 -36.25290 -34.92811 -31.88197 -30.81560 -30.68411 -28.85904 -28.00953 -27.57793 -27.05339 -26.76371 -23.92202 -23.35423 -22.80877 -21.13332 -20.08340 -18.99391 -18.58468 -18.28580 -17.84915 -17.56342 -17.32961 -16.89292 -16.49984 -16.44484 -16.31195 -15.97508 -15.80619 -15.48562 -15.40533 -15.12856 -14.78364 -14.53933 -14.32398 -13.81698 -13.66557 -13.41578 -13.31137 -12.86704 -12.73583 -12.73044 -12.53928 -12.45609 -12.21935 -12.17668 -11.87954 -11.75181 -11.60646 -11.49082 -10.94219 -10.90561 -10.80985 -9.60827 -9.38130 -9.00958 -8.30574 -6.35808 0.11895 0.19636 1.33223 1.36997 1.47479 1.72814 1.94765 2.33044 2.34346 2.62999 2.88643 3.01699 3.22216 3.27262 3.66906 3.80666 3.94236 3.97316 4.09284 4.24206 4.30422 4.36486 4.37624 4.37876 4.38762 4.44225 4.51805 4.53107 4.54314 4.61859 4.72438 4.72602 4.73291 4.79729 4.82784 4.89201 5.03028 5.09504 5.20842 5.46568 5.69598 5.91949 5.95784 6.16948 6.29703 6.54708 6.67770 6.70907 7.27705 8.87071 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.002741 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.188998 B =10211.855901 C =11103.857749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.313 6.313 3 C 0.183 3.817 4 C -0.273 4.273 5 C 0.197 3.803 6 O -0.289 6.289 7 C 0.063 3.937 8 C 0.001 3.999 9 N -0.489 5.489 10 C 0.136 3.864 11 C -0.522 4.522 12 H 0.024 0.976 13 C 0.002 3.998 14 N -0.952 5.952 15 Si 0.956 3.044 16 H -0.262 1.262 17 H -0.243 1.243 18 H -0.284 1.284 19 C -0.013 4.013 20 C -0.319 4.319 21 C 0.184 3.816 22 O -0.314 6.314 23 C 0.012 3.988 24 C -0.033 4.033 25 O -0.331 6.331 26 C 0.031 3.969 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.152 0.848 31 H 0.129 0.871 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.032 0.968 35 H 0.014 0.986 36 H 0.267 0.733 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.163 0.837 40 H 0.063 0.937 41 H 0.125 0.875 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.109 0.891 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.083 -18.933 -15.972 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.225 6.225 3 C 0.135 3.865 4 C -0.293 4.293 5 C 0.151 3.849 6 O -0.201 6.201 7 C 0.007 3.993 8 C -0.128 4.128 9 N -0.211 5.211 10 C 0.009 3.991 11 C -0.560 4.560 12 H 0.042 0.958 13 C -0.195 4.195 14 N -0.593 5.593 15 Si 0.779 3.221 16 H -0.186 1.186 17 H -0.166 1.166 18 H -0.209 1.209 19 C -0.142 4.142 20 C -0.338 4.338 21 C 0.137 3.863 22 O -0.227 6.227 23 C -0.082 4.082 24 C -0.078 4.078 25 O -0.247 6.247 26 C -0.064 4.064 27 H 0.145 0.855 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.169 0.831 31 H 0.146 0.854 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.180 0.820 40 H 0.081 0.919 41 H 0.144 0.856 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.127 0.873 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.450 -19.429 -15.415 27.750 hybrid contribution 0.218 1.711 -0.003 1.725 sum 12.668 -17.718 -15.418 26.685 Atomic orbital electron populations 1.23459 0.75936 1.05998 1.02541 1.86139 1.23686 1.25077 1.87644 1.18597 0.90284 0.84798 0.92782 1.20339 1.01491 0.88830 1.18623 1.18589 0.89553 0.86221 0.90575 1.86201 1.35293 1.12496 1.86109 1.23616 0.96845 0.81518 0.97351 1.24171 0.99676 0.95470 0.93457 1.68951 1.30941 1.13919 1.07330 1.20540 0.95671 0.87157 0.95755 1.21235 1.38736 0.92730 1.03331 0.95775 1.26022 0.95058 1.02106 0.96315 1.70083 1.45969 1.21641 1.21568 0.85584 0.78826 0.77548 0.80171 1.18635 1.16642 1.20930 1.24372 0.93307 0.97795 0.98729 1.21253 0.93113 0.99277 1.20180 1.18681 0.83407 0.91917 0.92330 1.86137 1.15771 1.33222 1.87557 1.23490 1.00438 0.81627 1.02636 1.17060 0.86780 0.85199 1.18809 1.86157 1.70240 1.37937 1.30389 1.23135 0.99823 0.99078 0.84326 0.85473 0.92025 0.91287 0.83067 0.85366 0.88984 0.87489 0.95036 0.96854 0.92377 0.88604 0.91680 0.82008 0.91882 0.85643 0.90949 0.93621 0.87264 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.31 -7.31 10.27 -79.45 -0.82 -8.13 16 3 C 0.18 4.76 6.69 22.54 0.15 4.91 16 4 C -0.27 -7.05 8.97 22.47 0.20 -6.85 16 5 C 0.20 5.33 6.68 22.48 0.15 5.48 16 6 O -0.29 -8.72 10.19 -93.21 -0.95 -9.67 16 7 C 0.06 1.66 4.06 30.94 0.13 1.79 16 8 C 0.00 0.03 7.52 83.58 0.63 0.66 16 9 N -0.49 -20.03 6.32 -932.95 -5.89 -25.93 16 10 C 0.14 6.33 3.64 85.56 0.31 6.64 16 11 C -0.52 -30.85 9.94 25.60 0.25 -30.60 16 12 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 13 C 0.00 0.11 5.47 84.65 0.46 0.57 16 14 N -0.95 -60.42 13.96 21.45 0.30 -60.13 16 15 Si 0.96 42.89 27.47 68.60 1.88 44.77 16 16 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 C -0.01 -0.43 7.56 83.57 0.63 0.20 16 20 C -0.32 -7.51 8.02 22.47 0.18 -7.33 16 21 C 0.18 4.62 6.69 22.54 0.15 4.77 16 22 O -0.31 -7.01 10.27 -79.43 -0.82 -7.82 16 23 C 0.01 0.16 9.81 113.37 1.11 1.27 16 24 C -0.03 -0.91 5.75 22.62 0.13 -0.78 16 25 O -0.33 -9.00 9.98 -71.31 -0.71 -9.71 16 26 C 0.03 0.58 11.13 113.37 1.26 1.85 16 27 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 29 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 30 H 0.15 3.51 6.29 -2.91 -0.02 3.49 16 31 H 0.13 2.34 5.89 -2.39 -0.01 2.32 16 32 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.11 2.52 7.91 -2.39 -0.02 2.50 16 34 H 0.03 1.44 7.14 -2.39 -0.02 1.42 16 35 H 0.01 0.58 6.73 -2.39 -0.02 0.57 16 36 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 37 H 0.10 2.84 7.42 -2.39 -0.02 2.82 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.16 3.01 4.10 -2.91 -0.01 3.00 16 40 H 0.06 0.83 7.67 -2.39 -0.02 0.81 16 41 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 0.75 7.65 -2.39 -0.02 0.73 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -78.58 370.44 0.81 -77.77 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.95 Total: 14.93 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 6.87 Total: -16.09 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -5.59 Total: -86.05 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -3.29 Total: -35.33 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.77 kcal Total: -78.58 0.81 -77.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225313321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.505 kcal (2) G-P(sol) polarization free energy of solvation -78.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds