Wall clock time and date at job start Tue Mar 31 2020 14:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36076 * 116.99736 * 2 1 4 4 C 1.38596 * 119.99941 * 0.27289 * 3 2 1 5 5 C 1.38283 * 120.11518 * 180.27861 * 4 3 2 6 6 C 1.38596 * 120.12616 * 359.71958 * 5 4 3 7 7 O 1.36072 * 120.00531 * 179.97438 * 6 5 4 8 8 C 1.42904 * 116.99509 * 5.66171 * 7 6 5 9 9 H 1.09000 * 110.88399 * 31.96577 * 8 7 6 10 10 C 1.55160 * 111.00118 * 155.84287 * 8 7 6 11 11 C 1.54327 * 102.94213 * 153.57724 * 10 8 7 12 12 N 1.47020 * 107.26878 * 337.80730 * 11 10 8 13 13 C 1.36935 * 125.64614 * 178.99314 * 12 11 10 14 14 H 1.08000 * 120.00345 * 186.23056 * 13 12 11 15 15 C 1.38819 * 120.00150 * 6.23736 * 13 12 11 16 16 N 1.31620 * 119.99647 * 352.94419 * 15 13 12 17 17 Si 1.86800 * 120.00002 * 172.94870 * 15 13 12 18 18 H 1.48495 * 109.47218 * 94.98196 * 17 15 13 19 19 H 1.48501 * 109.46903 * 214.97706 * 17 15 13 20 20 H 1.48499 * 109.47356 * 334.97743 * 17 15 13 21 21 C 1.47466 * 108.72727 * 358.97558 * 12 11 10 22 22 C 1.39024 * 119.99830 * 0.02562 * 6 5 4 23 23 O 1.36086 * 120.06179 * 179.97438 * 22 6 5 24 24 C 1.42904 * 116.99946 * 270.02275 * 23 22 6 25 25 C 1.38880 * 119.87804 * 359.97438 * 22 6 5 26 26 O 1.36088 * 120.06098 * 180.02562 * 25 22 6 27 27 C 1.42901 * 116.99580 * 90.00607 * 26 25 22 28 28 H 1.09002 * 109.46936 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47395 * 300.00006 * 1 2 3 30 30 H 1.09004 * 109.46858 * 60.00684 * 1 2 3 31 31 H 1.07995 * 119.94411 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.93900 * 179.74891 * 5 4 3 33 33 H 1.09001 * 110.71984 * 271.94248 * 10 8 7 34 34 H 1.09001 * 110.72012 * 35.21508 * 10 8 7 35 35 H 1.08995 * 109.88004 * 97.22564 * 11 10 8 36 36 H 1.08998 * 109.87894 * 218.23801 * 11 10 8 37 37 H 0.96997 * 119.99624 * 179.97438 * 16 15 13 38 38 H 1.09000 * 110.34978 * 265.25573 * 21 12 11 39 39 H 1.09003 * 110.40848 * 142.91375 * 21 12 11 40 40 H 1.08987 * 109.47148 * 59.99970 * 24 23 22 41 41 H 1.08997 * 109.46921 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.46895 * 299.99725 * 24 23 22 43 43 H 1.09004 * 109.46954 * 180.02562 * 27 26 25 44 44 H 1.08993 * 109.47229 * 59.99796 * 27 26 25 45 45 H 1.09003 * 109.47151 * 299.99860 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 1.2919 2.3748 0.0057 5 6 1.9171 3.6082 -0.0001 6 6 3.3008 3.6867 -0.0058 7 8 3.9134 4.9016 -0.0120 8 6 3.0746 6.0518 0.1133 9 1 2.2012 5.8307 0.7268 10 6 3.8657 7.2574 0.6860 11 6 3.0955 8.4727 0.1280 12 7 2.3595 8.0152 -1.0596 13 6 1.5363 8.7875 -1.8349 14 1 0.9608 8.3347 -2.6287 15 6 1.4416 10.1525 -1.6005 16 7 2.0320 10.6824 -0.5503 17 14 0.4761 11.2371 -2.7757 18 1 -0.9071 11.4122 -2.2646 19 1 1.1363 12.5631 -2.8810 20 1 0.4316 10.5984 -4.1156 21 6 2.6545 6.5870 -1.2784 22 6 4.0629 2.5239 -0.0062 23 8 5.4217 2.5995 -0.0123 24 6 6.0638 2.6328 -1.2885 25 6 3.4351 1.2852 -0.0004 26 8 4.1775 0.1446 -0.0002 27 6 4.5363 -0.3956 1.2731 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 0.2135 2.3172 0.0098 32 1 1.3260 4.5121 0.0003 33 1 3.8410 7.2523 1.7757 34 1 4.8933 7.2520 0.3225 35 1 2.3964 8.8442 0.8771 36 1 3.7962 9.2607 -0.1480 37 1 1.9661 11.6362 -0.3868 38 1 3.4717 6.4736 -1.9908 39 1 1.7657 6.0652 -1.6330 40 1 5.7196 3.5039 -1.8458 41 1 7.1433 2.6935 -1.1505 42 1 5.8184 1.7268 -1.8424 43 1 5.1256 -1.3014 1.1305 44 1 3.6328 -0.6341 1.8343 45 1 5.1245 0.3368 1.8259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226029806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:13 Heat of formation + Delta-G solvation = -79.458527 kcal Electronic energy + Delta-G solvation = -28197.340463 eV Core-core repulsion = 24183.374538 eV Total energy + Delta-G solvation = -4013.965925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95793 -39.31329 -38.63298 -37.54256 -36.59343 -35.40296 -32.33115 -30.29174 -29.66281 -29.01682 -27.57121 -27.27503 -27.02162 -26.32718 -24.58825 -22.63855 -22.11236 -20.34311 -20.14032 -18.90630 -17.87410 -17.44728 -16.95357 -16.70570 -16.26291 -16.25368 -15.49606 -15.08769 -14.90118 -14.80388 -14.60220 -14.56601 -14.31786 -13.86241 -13.38843 -13.06266 -12.85392 -12.58927 -12.42037 -12.18681 -12.02837 -11.93953 -11.70733 -11.66552 -11.23704 -11.01466 -10.92319 -10.79833 -10.42321 -10.37206 -10.17636 -9.98101 -9.90929 -9.72570 -9.69555 -8.74883 -8.64314 -7.70768 -6.92400 -5.79610 -3.13212 0.85478 1.28169 2.95201 3.06495 3.36195 3.41595 3.43883 3.47530 3.75580 4.06550 4.45081 4.69708 4.83422 4.95563 4.98326 5.01251 5.16221 5.23396 5.26102 5.28134 5.29568 5.31422 5.40691 5.42999 5.48607 5.53539 5.58739 5.61681 5.69846 5.75614 6.03476 6.10314 6.15773 6.24585 6.36892 6.41080 6.54640 6.61112 6.91385 7.25804 7.45643 7.49353 7.53475 7.72334 7.78726 8.16822 9.13311 9.73280 10.38240 11.32527 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018497 B = 0.003098 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.404789 B = 9037.083683 C = 9972.662085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.077 3.923 4 C -0.158 4.158 5 C -0.162 4.162 6 C 0.106 3.894 7 O -0.291 6.291 8 C 0.062 3.938 9 H 0.081 0.919 10 C -0.135 4.135 11 C 0.178 3.822 12 N -0.602 5.602 13 C -0.233 4.233 14 H 0.079 0.921 15 C -0.005 4.005 16 N -0.919 5.919 17 Si 0.912 3.088 18 H -0.289 1.289 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.121 3.879 22 C 0.076 3.924 23 O -0.317 6.317 24 C 0.039 3.961 25 C 0.081 3.919 26 O -0.319 6.319 27 C 0.039 3.961 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.254 0.746 38 H 0.031 0.969 39 H 0.042 0.958 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.524 -21.181 3.732 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.032 3.968 4 C -0.177 4.177 5 C -0.181 4.181 6 C 0.059 3.941 7 O -0.204 6.204 8 C 0.005 3.995 9 H 0.099 0.901 10 C -0.173 4.173 11 C 0.053 3.947 12 N -0.330 5.330 13 C -0.361 4.361 14 H 0.097 0.903 15 C -0.201 4.201 16 N -0.566 5.566 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.206 1.206 21 C -0.006 4.006 22 C 0.031 3.969 23 O -0.234 6.234 24 C -0.056 4.056 25 C 0.035 3.965 26 O -0.235 6.235 27 C -0.055 4.055 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.958 -21.180 3.703 21.590 hybrid contribution -1.165 0.925 -0.570 1.593 sum 0.792 -20.255 3.133 20.511 Atomic orbital electron populations 1.23074 0.78640 1.03834 1.01433 1.86137 1.20957 1.25841 1.89253 1.19019 0.90892 0.85029 1.01882 1.20990 1.00220 0.91003 1.05469 1.21211 0.93135 0.98989 1.04731 1.19184 0.90850 0.85953 0.98122 1.86210 1.35927 1.11296 1.86966 1.23936 0.93428 0.82989 0.99138 0.90138 1.23024 1.00119 0.94226 0.99934 1.21209 0.93902 0.90975 0.88587 1.44339 1.53709 1.04276 1.30672 1.19044 1.17758 0.88931 1.10356 0.90317 1.24839 1.00489 0.96617 0.98187 1.69956 1.47963 1.11470 1.27206 0.86107 0.79045 0.80216 0.80439 1.21607 1.21528 1.20558 1.21918 0.97981 0.87321 0.93376 1.17896 0.83784 0.88603 1.06634 1.86030 1.14136 1.93752 1.29443 1.22998 0.97520 1.00825 0.84229 1.17828 0.86533 0.85596 1.06498 1.86033 1.70441 1.37655 1.29361 1.22976 0.99562 0.98527 0.84447 0.88307 0.92705 0.92549 0.84429 0.83615 0.91343 0.91038 0.93450 0.92900 0.93594 0.95180 0.94024 0.93143 0.88966 0.93461 0.89035 0.93671 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.72 10.28 -34.61 -0.36 -4.08 16 3 C 0.08 1.04 6.70 -39.16 -0.26 0.77 16 4 C -0.16 -1.96 9.03 -39.43 -0.36 -2.32 16 5 C -0.16 -2.31 8.95 -39.43 -0.35 -2.66 16 6 C 0.11 1.70 6.69 -39.16 -0.26 1.44 16 7 O -0.29 -5.16 9.73 -34.60 -0.34 -5.50 16 8 C 0.06 1.13 2.81 -24.58 -0.07 1.06 16 9 H 0.08 1.39 6.21 -51.93 -0.32 1.07 16 10 C -0.13 -2.57 6.69 -24.89 -0.17 -2.74 16 11 C 0.18 4.25 5.38 -3.06 -0.02 4.24 16 12 N -0.60 -15.25 3.40 -170.04 -0.58 -15.82 16 13 C -0.23 -6.41 10.26 -15.06 -0.15 -6.57 16 14 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 15 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 16 N -0.92 -26.53 10.36 55.49 0.58 -25.96 16 17 Si 0.91 21.76 29.56 -169.99 -5.02 16.73 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.12 2.53 6.87 -2.51 -0.02 2.51 16 22 C 0.08 1.19 5.75 -39.05 -0.22 0.97 16 23 O -0.32 -4.93 9.98 -45.31 -0.45 -5.38 16 24 C 0.04 0.48 11.13 101.05 1.13 1.61 16 25 C 0.08 1.18 5.75 -39.05 -0.22 0.96 16 26 O -0.32 -4.47 9.98 -45.31 -0.45 -4.93 16 27 C 0.04 0.41 11.13 101.05 1.13 1.54 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 30 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 31 H 0.14 1.33 6.29 -52.49 -0.33 1.00 16 32 H 0.15 2.05 5.66 -52.49 -0.30 1.75 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.05 1.23 7.55 -51.93 -0.39 0.83 16 36 H 0.05 1.40 7.36 -51.93 -0.38 1.01 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.83 7.83 -51.93 -0.41 0.43 16 40 H 0.05 0.66 8.14 -51.94 -0.42 0.24 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -32.18 370.83 -6.69 -38.87 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.70 Total: -1.32 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 1.04 Total: 1.78 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.00 Total: -41.78 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -1.60 Total: -19.88 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.18 -6.69 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226029806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.584 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds