Wall clock time and date at job start Tue Mar 31 2020 14:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36068 * 117.00157 * 2 1 4 4 C 1.38593 * 120.00140 * 359.97438 * 3 2 1 5 5 C 1.38281 * 120.12304 * 180.02562 * 4 3 2 6 6 C 1.38591 * 120.12379 * 359.97438 * 5 4 3 7 7 O 1.36078 * 120.00348 * 179.97438 * 6 5 4 8 8 C 1.42896 * 116.99648 * 5.81426 * 7 6 5 9 9 C 1.53516 * 114.17116 * 156.74697 * 8 7 6 10 10 N 1.47472 * 87.93132 * 87.61984 * 9 8 7 11 11 C 1.46905 * 110.99882 * 138.70530 * 10 9 8 12 12 C 1.50704 * 109.47151 * 170.00066 * 11 10 9 13 13 H 1.08006 * 119.99671 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00094 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99914 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00087 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47549 * 270.00104 * 16 14 12 18 18 H 1.48504 * 109.47181 * 30.00405 * 16 14 12 19 19 H 1.48500 * 109.47307 * 150.00299 * 16 14 12 20 20 C 1.47482 * 87.84086 * 27.01297 * 10 9 8 21 21 C 1.39022 * 119.99864 * 0.24855 * 6 5 4 22 22 O 1.36091 * 120.06287 * 179.75084 * 21 6 5 23 23 C 1.42895 * 117.00107 * 89.99836 * 22 21 6 24 24 C 1.38874 * 119.87718 * 359.52322 * 21 6 5 25 25 O 1.36095 * 120.06169 * 180.22628 * 24 21 6 26 26 C 1.42898 * 116.99865 * 270.25673 * 25 24 21 27 27 H 1.09006 * 109.47473 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47414 * 300.00423 * 1 2 3 29 29 H 1.08998 * 109.47203 * 59.99951 * 1 2 3 30 30 H 1.08000 * 119.93831 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.93849 * 179.97438 * 5 4 3 32 32 H 1.08999 * 113.25915 * 23.79509 * 8 7 6 33 33 H 1.09000 * 113.47271 * 332.85280 * 9 8 7 34 34 H 1.08994 * 113.53221 * 202.40036 * 9 8 7 35 35 H 1.08995 * 109.46831 * 50.00048 * 11 10 9 36 36 H 1.08998 * 109.47298 * 290.00066 * 11 10 9 37 37 H 0.97002 * 119.99908 * 179.97438 * 15 14 12 38 38 H 1.09001 * 113.47657 * 87.74985 * 20 10 9 39 39 H 1.09001 * 113.47841 * 218.22742 * 20 10 9 40 40 H 1.08997 * 109.47168 * 180.02562 * 23 22 21 41 41 H 1.08995 * 109.47326 * 300.00277 * 23 22 21 42 42 H 1.08997 * 109.46872 * 60.00353 * 23 22 21 43 43 H 1.08993 * 109.47401 * 59.99602 * 26 25 24 44 44 H 1.08997 * 109.46863 * 180.02562 * 26 25 24 45 45 H 1.09008 * 109.46968 * 299.99376 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 1.2919 2.3747 -0.0005 5 6 1.9171 3.6081 -0.0011 6 6 3.3008 3.6866 -0.0005 7 8 3.9135 4.9016 -0.0016 8 6 3.0745 6.0513 0.1258 9 6 3.7903 7.2944 0.6724 10 7 4.1636 7.6241 -0.7157 11 6 4.0246 9.0642 -0.9704 12 6 4.6408 9.4004 -2.3039 13 1 5.0911 8.6220 -2.9023 14 6 4.6298 10.7014 -2.7602 15 7 4.0820 11.6492 -2.0313 16 14 5.3943 11.1181 -4.4128 17 1 6.8272 11.4589 -4.2236 18 1 5.2792 9.9484 -5.3205 19 1 4.6841 12.2784 -5.0083 20 6 2.9610 6.8915 -1.1541 21 6 4.0629 2.5238 -0.0047 22 8 5.4217 2.5993 -0.0093 23 6 6.0739 2.6337 1.2617 24 6 3.4351 1.2851 0.0007 25 8 4.1775 0.1445 0.0013 26 6 4.5320 -0.3994 -1.2717 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2135 2.3171 -0.0014 31 1 1.3260 4.5120 -0.0019 32 1 2.1210 5.8369 0.6085 33 1 4.6444 7.0595 1.3076 34 1 3.1158 8.0212 1.1250 35 1 4.5325 9.6228 -0.1842 36 1 2.9678 9.3311 -0.9809 37 1 4.0746 12.5646 -2.3521 38 1 2.0643 7.5102 -1.1892 39 1 3.1123 6.3150 -2.0667 40 1 7.1523 2.6943 1.1152 41 1 5.7340 3.5053 1.8210 42 1 5.8328 1.7281 1.8183 43 1 5.1183 0.3313 -1.8286 44 1 5.1210 -1.3053 -1.1283 45 1 3.6265 -0.6397 -1.8290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226030744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:01 Heat of formation + Delta-G solvation = -61.785518 kcal Electronic energy + Delta-G solvation = -27735.845906 eV Core-core repulsion = 23722.646340 eV Total energy + Delta-G solvation = -4013.199566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08811 -39.92936 -38.87499 -37.95838 -37.16889 -35.51397 -32.86201 -30.39865 -29.77042 -28.92241 -27.50276 -27.08204 -26.44868 -25.59889 -25.27746 -22.96479 -22.21310 -21.48914 -19.67817 -18.93887 -17.80225 -17.30454 -16.92804 -16.43183 -16.32708 -16.26288 -15.62124 -15.31901 -15.03583 -14.98385 -14.89072 -14.56535 -14.50593 -13.82996 -13.70856 -13.34179 -13.13800 -12.96544 -12.48483 -12.34936 -12.03242 -11.98269 -11.92116 -11.72043 -11.48724 -11.08845 -11.01774 -10.81371 -10.55194 -10.42284 -10.31900 -9.95112 -9.77934 -9.66771 -9.27720 -8.83459 -8.43959 -7.88227 -7.79639 -6.04644 -4.05436 0.76300 1.17901 2.86921 2.96198 3.27367 3.32822 3.38321 3.43509 3.67262 3.99726 4.42229 4.53938 4.64720 4.73641 4.79051 4.84278 4.86591 4.90922 5.15525 5.18710 5.20020 5.23015 5.27169 5.30855 5.37215 5.39032 5.49438 5.59201 5.69491 5.78525 5.83495 5.94541 5.95483 6.02198 6.12190 6.18297 6.31873 6.59324 6.83809 7.11025 7.19766 7.40222 7.62804 7.68630 7.84692 8.08041 8.44105 9.02642 9.58906 11.06511 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018141 B = 0.002725 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.091743 B =10273.784657 C =10674.336477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.079 3.921 4 C -0.160 4.160 5 C -0.166 4.166 6 C 0.102 3.898 7 O -0.262 6.262 8 C 0.041 3.959 9 C 0.001 3.999 10 N -0.454 5.454 11 C 0.156 3.844 12 C -0.503 4.503 13 H 0.064 0.936 14 C 0.054 3.946 15 N -0.902 5.902 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.273 1.273 19 H -0.287 1.287 20 C -0.005 4.005 21 C 0.081 3.919 22 O -0.315 6.315 23 C 0.040 3.960 24 C 0.083 3.917 25 O -0.319 6.319 26 C 0.039 3.961 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.004 0.996 37 H 0.261 0.739 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.046 0.954 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.511 -23.546 7.225 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.033 3.967 4 C -0.178 4.178 5 C -0.184 4.184 6 C 0.055 3.945 7 O -0.174 6.174 8 C -0.016 4.016 9 C -0.128 4.128 10 N -0.177 5.177 11 C 0.030 3.970 12 C -0.542 4.542 13 H 0.082 0.918 14 C -0.147 4.147 15 N -0.542 5.542 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.198 1.198 19 H -0.213 1.213 20 C -0.135 4.135 21 C 0.035 3.965 22 O -0.231 6.231 23 C -0.054 4.054 24 C 0.037 3.963 25 O -0.235 6.235 26 C -0.056 4.056 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.161 0.839 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.022 0.978 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.373 -23.712 6.926 25.512 hybrid contribution -1.062 1.101 -0.615 1.649 sum -7.435 -22.611 6.310 24.624 Atomic orbital electron populations 1.23073 0.78638 1.03908 1.01339 1.86146 1.20955 1.25816 1.89187 1.19030 0.90913 0.85053 1.01701 1.20958 1.00144 0.91021 1.05723 1.21092 0.93023 0.98788 1.05530 1.19242 0.90915 0.85993 0.98321 1.86311 1.34063 1.10495 1.86514 1.23778 0.93614 0.84466 0.99736 1.23994 0.99661 0.93064 0.96115 1.69108 1.31989 1.13370 1.03256 1.20310 0.96058 0.82529 0.98117 1.21106 1.36762 0.93424 1.02884 0.91784 1.25003 0.95640 0.96295 0.97797 1.69954 1.45230 1.01037 1.37928 0.86465 0.79276 0.77852 0.83663 1.20568 1.19782 1.21312 1.24250 0.95264 0.96331 0.97653 1.17895 0.84022 0.88539 1.06002 1.86078 1.13808 1.93672 1.29511 1.22990 0.97617 1.00537 0.84281 1.17865 0.86560 0.85680 1.06150 1.86029 1.70455 1.37509 1.29533 1.22997 0.99680 0.98574 0.84321 0.88257 0.92655 0.92664 0.84454 0.83893 0.89703 0.89734 0.90406 0.95171 0.97844 0.92925 0.90583 0.89884 0.88792 0.93315 0.93511 0.93017 0.88945 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.41 10.28 -34.58 -0.36 -3.77 16 3 C 0.08 0.97 6.70 -39.16 -0.26 0.71 16 4 C -0.16 -1.71 9.03 -39.43 -0.36 -2.07 16 5 C -0.17 -2.00 9.02 -39.44 -0.36 -2.36 16 6 C 0.10 1.52 6.69 -39.16 -0.26 1.26 16 7 O -0.26 -4.45 9.97 -34.61 -0.34 -4.79 16 8 C 0.04 0.64 4.06 -26.20 -0.11 0.53 16 9 C 0.00 0.02 7.52 -7.54 -0.06 -0.04 16 10 N -0.45 -10.10 6.32 -246.09 -1.55 -11.65 16 11 C 0.16 4.07 4.57 -4.97 -0.02 4.05 16 12 C -0.50 -14.56 9.39 -34.44 -0.32 -14.88 16 13 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 16 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C -0.01 -0.10 7.55 -7.53 -0.06 -0.16 16 21 C 0.08 1.22 5.75 -39.06 -0.22 1.00 16 22 O -0.31 -4.93 9.98 -45.32 -0.45 -5.38 16 23 C 0.04 0.49 11.13 101.05 1.13 1.61 16 24 C 0.08 1.16 5.75 -39.05 -0.22 0.93 16 25 O -0.32 -4.34 9.98 -45.33 -0.45 -4.79 16 26 C 0.04 0.40 11.13 101.05 1.13 1.53 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.14 1.05 6.29 -52.49 -0.33 0.72 16 31 H 0.14 1.48 5.87 -52.49 -0.31 1.17 16 32 H 0.09 1.04 5.90 -51.93 -0.31 0.73 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 35 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.08 1.35 7.42 -51.93 -0.39 0.96 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -34.24 377.73 -7.54 -41.78 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.68 Total: -2.71 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 0.89 Total: -5.27 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.82 Total: -37.81 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -1.61 Total: -18.73 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.24 -7.54 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226030744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.003 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds