Wall clock time and date at job start Tue Mar 31 2020 14:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36068 * 117.00157 * 2 1 4 4 C 1.38593 * 120.00140 * 359.97438 * 3 2 1 5 5 C 1.38281 * 120.12304 * 180.02562 * 4 3 2 6 6 C 1.38591 * 120.12379 * 359.97438 * 5 4 3 7 7 O 1.36078 * 120.00348 * 179.97438 * 6 5 4 8 8 C 1.42896 * 116.99648 * 5.81426 * 7 6 5 9 9 C 1.53516 * 114.17116 * 156.74697 * 8 7 6 10 10 N 1.47472 * 87.93132 * 87.61984 * 9 8 7 11 11 C 1.46905 * 110.99882 * 138.70530 * 10 9 8 12 12 C 1.50704 * 109.47151 * 170.00066 * 11 10 9 13 13 H 1.08006 * 119.99671 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00094 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99914 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00087 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47549 * 270.00104 * 16 14 12 18 18 H 1.48504 * 109.47181 * 30.00405 * 16 14 12 19 19 H 1.48500 * 109.47307 * 150.00299 * 16 14 12 20 20 C 1.47482 * 87.84086 * 27.01297 * 10 9 8 21 21 C 1.39022 * 119.99864 * 0.24855 * 6 5 4 22 22 O 1.36091 * 120.06287 * 179.75084 * 21 6 5 23 23 C 1.42895 * 117.00107 * 89.99836 * 22 21 6 24 24 C 1.38874 * 119.87718 * 359.52322 * 21 6 5 25 25 O 1.36095 * 120.06169 * 180.22628 * 24 21 6 26 26 C 1.42898 * 116.99865 * 270.25673 * 25 24 21 27 27 H 1.09006 * 109.47473 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47414 * 300.00423 * 1 2 3 29 29 H 1.08998 * 109.47203 * 59.99951 * 1 2 3 30 30 H 1.08000 * 119.93831 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.93849 * 179.97438 * 5 4 3 32 32 H 1.08999 * 113.25915 * 23.79509 * 8 7 6 33 33 H 1.09000 * 113.47271 * 332.85280 * 9 8 7 34 34 H 1.08994 * 113.53221 * 202.40036 * 9 8 7 35 35 H 1.08995 * 109.46831 * 50.00048 * 11 10 9 36 36 H 1.08998 * 109.47298 * 290.00066 * 11 10 9 37 37 H 0.97002 * 119.99908 * 179.97438 * 15 14 12 38 38 H 1.09001 * 113.47657 * 87.74985 * 20 10 9 39 39 H 1.09001 * 113.47841 * 218.22742 * 20 10 9 40 40 H 1.08997 * 109.47168 * 180.02562 * 23 22 21 41 41 H 1.08995 * 109.47326 * 300.00277 * 23 22 21 42 42 H 1.08997 * 109.46872 * 60.00353 * 23 22 21 43 43 H 1.08993 * 109.47401 * 59.99602 * 26 25 24 44 44 H 1.08997 * 109.46863 * 180.02562 * 26 25 24 45 45 H 1.09008 * 109.46968 * 299.99376 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 1.2919 2.3747 -0.0005 5 6 1.9171 3.6081 -0.0011 6 6 3.3008 3.6866 -0.0005 7 8 3.9135 4.9016 -0.0016 8 6 3.0745 6.0513 0.1258 9 6 3.7903 7.2944 0.6724 10 7 4.1636 7.6241 -0.7157 11 6 4.0246 9.0642 -0.9704 12 6 4.6408 9.4004 -2.3039 13 1 5.0911 8.6220 -2.9023 14 6 4.6298 10.7014 -2.7602 15 7 4.0820 11.6492 -2.0313 16 14 5.3943 11.1181 -4.4128 17 1 6.8272 11.4589 -4.2236 18 1 5.2792 9.9484 -5.3205 19 1 4.6841 12.2784 -5.0083 20 6 2.9610 6.8915 -1.1541 21 6 4.0629 2.5238 -0.0047 22 8 5.4217 2.5993 -0.0093 23 6 6.0739 2.6337 1.2617 24 6 3.4351 1.2851 0.0007 25 8 4.1775 0.1445 0.0013 26 6 4.5320 -0.3994 -1.2717 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2135 2.3171 -0.0014 31 1 1.3260 4.5120 -0.0019 32 1 2.1210 5.8369 0.6085 33 1 4.6444 7.0595 1.3076 34 1 3.1158 8.0212 1.1250 35 1 4.5325 9.6228 -0.1842 36 1 2.9678 9.3311 -0.9809 37 1 4.0746 12.5646 -2.3521 38 1 2.0643 7.5102 -1.1892 39 1 3.1123 6.3150 -2.0667 40 1 7.1523 2.6943 1.1152 41 1 5.7340 3.5053 1.8210 42 1 5.8328 1.7281 1.8183 43 1 5.1183 0.3313 -1.8286 44 1 5.1210 -1.3053 -1.1283 45 1 3.6265 -0.6397 -1.8290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226030744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:00 Heat of formation + Delta-G solvation = -86.481741 kcal Electronic energy + Delta-G solvation = -27736.916814 eV Core-core repulsion = 23722.646340 eV Total energy + Delta-G solvation = -4014.270474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.11627 -41.18787 -39.82165 -39.06548 -38.26900 -36.54340 -35.00368 -31.48463 -31.16920 -30.12603 -28.20474 -27.99903 -27.50647 -27.16159 -26.83479 -24.32570 -23.17582 -23.08549 -20.94899 -19.92437 -18.81542 -18.57215 -18.31360 -17.87612 -17.40091 -17.23588 -16.93222 -16.45093 -16.30655 -16.20085 -15.91227 -15.73185 -15.49814 -15.35689 -14.99880 -14.91302 -14.13755 -13.87715 -13.82575 -13.56695 -13.54433 -13.17176 -12.91260 -12.85084 -12.67776 -12.56816 -12.36344 -12.32598 -12.08578 -11.87362 -11.56053 -11.39374 -11.29734 -11.09245 -10.75407 -10.62845 -9.79930 -9.58491 -8.79065 -8.24781 -6.34344 -0.17399 0.20764 1.38071 1.39594 1.51158 1.88328 2.05847 2.34530 2.38049 2.75130 3.02403 3.07271 3.29806 3.33882 3.70155 3.81626 3.96936 3.99311 4.21928 4.29632 4.37455 4.43143 4.44142 4.44714 4.45644 4.47869 4.48922 4.55660 4.61421 4.67484 4.73405 4.76666 4.78742 4.85788 4.94389 5.03425 5.04895 5.07410 5.26055 5.56844 5.77879 5.96073 6.07166 6.25568 6.40756 6.46255 6.67771 6.79516 7.35128 8.86067 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018141 B = 0.002725 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.091743 B =10273.784657 C =10674.336477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.082 3.918 4 C -0.149 4.149 5 C -0.158 4.158 6 C 0.075 3.925 7 O -0.288 6.288 8 C 0.067 3.933 9 C 0.000 4.000 10 N -0.489 5.489 11 C 0.172 3.828 12 C -0.528 4.528 13 H 0.051 0.949 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.967 3.033 17 H -0.274 1.274 18 H -0.269 1.269 19 H -0.276 1.276 20 C -0.008 4.008 21 C 0.062 3.938 22 O -0.340 6.340 23 C 0.039 3.961 24 C 0.065 3.935 25 O -0.334 6.334 26 C 0.036 3.964 27 H 0.119 0.881 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.175 0.825 31 H 0.165 0.835 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.003 0.997 36 H -0.009 1.009 37 H 0.266 0.734 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.043 0.957 42 H 0.054 0.946 43 H 0.040 0.960 44 H 0.116 0.884 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.353 -24.869 7.101 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.036 3.964 4 C -0.167 4.167 5 C -0.176 4.176 6 C 0.029 3.971 7 O -0.202 6.202 8 C 0.011 3.989 9 C -0.129 4.129 10 N -0.212 5.212 11 C 0.045 3.955 12 C -0.566 4.566 13 H 0.069 0.931 14 C -0.194 4.194 15 N -0.571 5.571 16 Si 0.792 3.208 17 H -0.199 1.199 18 H -0.193 1.193 19 H -0.201 1.201 20 C -0.138 4.138 21 C 0.017 3.983 22 O -0.257 6.257 23 C -0.055 4.055 24 C 0.020 3.980 25 O -0.251 6.251 26 C -0.057 4.057 27 H 0.137 0.863 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.192 0.808 31 H 0.182 0.818 32 H 0.147 0.853 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.021 0.979 36 H 0.009 0.991 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.135 0.865 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.227 -25.064 6.811 27.245 hybrid contribution -0.543 1.356 -0.544 1.559 sum -8.770 -23.708 6.267 26.044 Atomic orbital electron populations 1.23432 0.76161 1.05795 1.02620 1.86138 1.23504 1.25289 1.88837 1.19139 0.90517 0.86167 1.00613 1.21315 1.01807 0.89754 1.03831 1.21337 0.91855 1.00242 1.04166 1.19440 0.92169 0.84984 1.00493 1.86264 1.35267 1.11438 1.87202 1.23562 0.94701 0.83539 0.97122 1.24067 1.00430 0.94558 0.93878 1.69007 1.34612 1.10690 1.06857 1.19967 0.94386 0.85051 0.96048 1.21404 1.37401 0.93630 1.04195 0.93061 1.25862 0.95880 0.96037 1.01576 1.70051 1.45954 1.01478 1.39655 0.85417 0.78527 0.77858 0.79039 1.19922 1.19331 1.20106 1.24289 0.94104 0.96529 0.98857 1.18160 0.83845 0.89322 1.07013 1.86019 1.14678 1.93873 1.31115 1.23102 0.98287 1.00638 0.83466 1.18026 0.87560 0.85403 1.07053 1.85992 1.70718 1.37449 1.30947 1.23140 1.00100 0.99028 0.83462 0.86317 0.91222 0.91364 0.80797 0.81776 0.85300 0.89684 0.88827 0.97885 0.99150 0.92502 0.89649 0.91094 0.87302 0.93822 0.92758 0.94101 0.86546 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.32 -6.41 10.28 -80.35 -0.83 -7.24 16 3 C 0.08 1.85 6.70 22.54 0.15 2.00 16 4 C -0.15 -2.70 9.03 22.36 0.20 -2.50 16 5 C -0.16 -3.39 9.02 22.36 0.20 -3.19 16 6 C 0.08 2.18 6.69 22.54 0.15 2.33 16 7 O -0.29 -9.71 9.97 -80.45 -0.80 -10.51 16 8 C 0.07 2.00 4.06 30.94 0.13 2.13 16 9 C 0.00 -0.01 7.52 83.58 0.63 0.62 16 10 N -0.49 -22.14 6.32 -932.89 -5.89 -28.03 16 11 C 0.17 9.28 4.57 85.56 0.39 9.67 16 12 C -0.53 -31.28 9.39 25.60 0.24 -31.04 16 13 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 14 C 0.00 0.27 5.46 84.65 0.46 0.74 16 15 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 16 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 C -0.01 -0.31 7.55 83.58 0.63 0.32 16 21 C 0.06 1.87 5.75 22.61 0.13 2.00 16 22 O -0.34 -10.96 9.98 -70.40 -0.70 -11.66 16 23 C 0.04 0.97 11.13 113.37 1.26 2.23 16 24 C 0.06 1.78 5.75 22.61 0.13 1.91 16 25 O -0.33 -9.01 9.98 -70.44 -0.70 -9.71 16 26 C 0.04 0.75 11.13 113.37 1.26 2.01 16 27 H 0.12 0.67 8.14 -2.38 -0.02 0.66 16 28 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 29 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 30 H 0.17 1.81 6.29 -2.91 -0.02 1.79 16 31 H 0.16 2.73 5.87 -2.91 -0.02 2.71 16 32 H 0.13 2.70 5.90 -2.39 -0.01 2.68 16 33 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.09 2.95 7.91 -2.39 -0.02 2.93 16 35 H 0.00 0.18 8.08 -2.39 -0.02 0.16 16 36 H -0.01 -0.51 7.30 -2.39 -0.02 -0.52 16 37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.09 2.97 7.42 -2.39 -0.02 2.95 16 39 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -76.31 377.73 1.46 -74.85 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.99 Total: 10.16 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 7.08 Total: -9.52 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -5.61 Total: -83.86 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -3.03 Total: -39.12 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -76.31 1.46 -74.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226030744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.632 kcal (2) G-P(sol) polarization free energy of solvation -76.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds