Wall clock time and date at job start Tue Mar 31 2020 14:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35278 * 126.71028 * 2 1 4 4 C 1.41924 * 103.96082 * 180.23869 * 3 2 1 5 5 O 1.35709 * 126.87852 * 179.75604 * 4 3 2 6 6 C 1.42901 * 117.00329 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47258 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00419 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00140 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00257 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.46928 * 34.99720 * 10 9 7 12 12 C 1.52999 * 109.46770 * 275.00066 * 10 9 7 13 13 C 1.53005 * 109.47217 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46575 * 60.00011 * 13 12 10 15 15 C 1.53001 * 109.47571 * 300.00216 * 14 13 12 16 16 C 1.52996 * 109.46985 * 155.00490 * 10 9 7 17 17 H 1.09000 * 109.47591 * 60.00155 * 16 10 9 18 18 N 1.46505 * 109.47217 * 299.99679 * 16 10 9 19 19 C 1.36926 * 119.99927 * 155.00386 * 18 16 10 20 20 H 1.08007 * 120.00499 * 359.97438 * 19 18 16 21 21 C 1.38818 * 119.99939 * 180.02562 * 19 18 16 22 22 N 1.31623 * 119.99743 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00114 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47252 * 90.00137 * 23 21 19 25 25 H 1.48502 * 109.47209 * 209.99825 * 23 21 19 26 26 H 1.48498 * 109.47501 * 330.00187 * 23 21 19 27 27 N 1.30618 * 106.24387 * 359.60672 * 4 3 2 28 28 O 1.20910 * 111.49833 * 0.41623 * 27 4 3 29 29 H 1.08997 * 109.47263 * 90.00501 * 1 2 3 30 30 H 1.09008 * 109.46948 * 210.00397 * 1 2 3 31 31 H 1.09003 * 109.47130 * 330.00318 * 1 2 3 32 32 H 1.08002 * 128.01476 * 359.96885 * 3 2 1 33 33 H 1.09000 * 109.46904 * 300.00034 * 6 5 4 34 34 H 1.09000 * 109.47299 * 59.99713 * 6 5 4 35 35 H 0.97003 * 119.99568 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.47383 * 300.00213 * 12 10 9 37 37 H 1.08997 * 109.47244 * 60.00125 * 12 10 9 38 38 H 1.09000 * 109.47252 * 300.00457 * 13 12 10 39 39 H 1.08993 * 109.47495 * 179.97438 * 13 12 10 40 40 H 1.09000 * 109.47015 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.47324 * 60.00679 * 14 13 12 42 42 H 1.09008 * 109.46751 * 300.00108 * 15 14 13 43 43 H 1.08997 * 109.47475 * 180.02562 * 15 14 13 44 44 H 0.97000 * 119.99542 * 335.00435 * 18 16 10 45 45 H 0.97002 * 119.99770 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6244 0.5357 -0.0057 5 8 4.7952 1.2218 -0.0126 6 6 5.9987 0.4514 -0.0180 7 6 7.1878 1.3772 -0.0258 8 8 7.0211 2.5784 -0.0262 9 7 8.4366 0.8702 -0.0314 10 6 9.5926 1.7701 -0.0384 11 1 9.3650 2.6583 0.5509 12 6 9.9105 2.1806 -1.4776 13 6 11.1173 3.1210 -1.4850 14 6 12.3261 2.4041 -0.8803 15 6 12.0082 1.9935 0.5589 16 6 10.8011 1.0526 0.5660 17 1 11.0286 0.1644 -0.0234 18 7 10.4967 0.6595 1.9441 19 6 11.1558 -0.3954 2.5166 20 1 11.8998 -0.9380 1.9521 21 6 10.8670 -0.7683 3.8222 22 7 9.9593 -0.1081 4.5096 23 14 11.7656 -2.2078 4.6029 24 1 12.9941 -1.7173 5.2780 25 1 10.8806 -2.8618 5.6000 26 1 12.1367 -3.1888 3.5516 27 7 3.4764 -0.7621 0.0001 28 8 2.3085 -1.0749 0.0002 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 2.0310 2.1263 -0.0005 33 1 6.0323 -0.1763 0.8725 34 1 6.0231 -0.1782 -0.9074 35 1 8.5699 -0.0907 -0.0308 36 1 10.1379 1.2924 -2.0670 37 1 9.0495 2.6917 -1.9083 38 1 10.8895 4.0092 -0.8957 39 1 11.3441 3.4131 -2.5103 40 1 13.1858 3.0741 -0.8851 41 1 12.5541 1.5159 -1.4696 42 1 11.7804 2.8818 1.1482 43 1 12.8695 1.4831 0.9899 44 1 9.8283 1.1465 2.4510 45 1 9.7578 -0.3684 5.4221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226903456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:54 Heat of formation + Delta-G solvation = -8.755993 kcal Electronic energy + Delta-G solvation = -27338.436227 eV Core-core repulsion = 23359.828945 eV Total energy + Delta-G solvation = -3978.607282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.02191 -40.02255 -38.80730 -37.55490 -34.08155 -34.03276 -33.81148 -32.65920 -31.18175 -29.99016 -28.51395 -28.02163 -27.14268 -23.75601 -23.54639 -22.52228 -21.34115 -21.06411 -20.19913 -19.51332 -18.06634 -17.97630 -17.37714 -16.91923 -16.64981 -16.11444 -15.81760 -15.10250 -14.49355 -14.34731 -14.09945 -14.03575 -13.79150 -13.67445 -13.59454 -13.50594 -13.02685 -12.94735 -12.74347 -12.63292 -12.25500 -12.12228 -11.68725 -11.23896 -11.11139 -10.94180 -10.87590 -10.78311 -10.59604 -10.35163 -10.19358 -9.81010 -9.69631 -9.68396 -9.57861 -9.29768 -8.95396 -8.67932 -7.02608 -5.81099 -3.11297 1.24853 2.15307 2.33599 2.78620 2.93379 3.39669 3.44949 3.46945 3.62692 4.06796 4.52635 4.58274 4.76766 4.78671 4.97392 5.00613 5.03468 5.03936 5.12583 5.17073 5.27513 5.31617 5.44776 5.48701 5.49714 5.68428 5.69850 5.77991 5.86074 5.92104 5.94885 6.09133 6.28513 6.42496 6.44115 6.46106 6.55230 6.78091 6.84372 6.89592 7.04903 7.64413 7.76609 8.11623 8.35722 8.42932 9.47639 10.03404 10.38609 11.40721 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010433 B = 0.003252 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.161038 B = 8608.725496 C =10856.685613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.013 4.013 3 C -0.233 4.233 4 C 0.215 3.785 5 O -0.256 6.256 6 C 0.045 3.955 7 C 0.520 3.480 8 O -0.528 6.528 9 N -0.701 5.701 10 C 0.143 3.857 11 H 0.086 0.914 12 C -0.125 4.125 13 C -0.114 4.114 14 C -0.120 4.120 15 C -0.133 4.133 16 C 0.173 3.827 17 H 0.052 0.948 18 N -0.722 5.722 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 N -0.410 5.410 28 O 0.098 5.902 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.405 0.595 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.683 1.730 -13.606 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.255 4.255 4 C 0.017 3.983 5 O -0.161 6.161 6 C -0.034 4.034 7 C 0.304 3.696 8 O -0.405 6.405 9 N -0.352 5.352 10 C 0.038 3.962 11 H 0.104 0.896 12 C -0.164 4.164 13 C -0.152 4.152 14 C -0.158 4.158 15 C -0.174 4.174 16 C 0.062 3.938 17 H 0.070 0.930 18 N -0.363 5.363 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 N -0.137 5.137 28 O 0.038 5.962 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.196 0.804 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.240 0.760 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.801 1.717 -13.526 18.702 hybrid contribution 0.268 -0.489 0.820 0.992 sum -12.532 1.227 -12.707 17.889 Atomic orbital electron populations 1.20363 0.83586 1.04907 1.04256 1.24338 0.96459 0.85692 1.01182 1.21796 0.88356 1.01664 1.13640 1.22073 0.88568 0.87987 0.99673 1.86273 1.10028 1.30841 1.88915 1.22528 0.82205 0.93797 1.04851 1.19763 0.83932 0.88809 0.77109 1.90717 1.85670 1.15094 1.48981 1.45721 1.04436 1.11078 1.73976 1.21355 0.85178 0.93624 0.96017 0.89613 1.21883 0.98247 0.99586 0.96668 1.21472 0.94843 0.98470 1.00386 1.21587 0.97077 0.99728 0.97393 1.22230 1.00210 1.00272 0.94678 1.20483 0.90590 0.94816 0.87878 0.93038 1.42425 1.47481 1.37255 1.09134 1.19193 1.16165 1.06281 0.95660 0.91166 1.24751 0.99343 0.99603 0.97014 1.69674 1.34997 1.42329 1.10668 0.86224 0.78873 0.82152 0.79095 1.21749 1.21830 1.20775 1.74190 0.97760 1.14281 1.27508 1.84794 1.10339 1.31967 1.69108 0.89196 0.89558 0.88820 0.80442 0.88163 0.88893 0.75991 0.91930 0.91899 0.91909 0.92313 0.92624 0.92352 0.92409 0.91516 0.78139 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.45 36.00 0.38 0.06 16 2 C -0.01 -0.12 7.48 -35.37 -0.26 -0.38 16 3 C -0.23 -2.58 11.10 -39.23 -0.44 -3.01 16 4 C 0.22 3.14 8.01 -16.66 -0.13 3.00 16 5 O -0.26 -4.23 9.74 -38.74 -0.38 -4.60 16 6 C 0.04 0.68 6.14 36.00 0.22 0.90 16 7 C 0.52 9.06 7.87 -10.98 -0.09 8.97 16 8 O -0.53 -11.01 16.16 -14.35 -0.23 -11.24 16 9 N -0.70 -11.46 4.91 -53.81 -0.26 -11.73 16 10 C 0.14 2.42 1.98 -67.93 -0.13 2.29 16 11 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 12 C -0.12 -1.77 5.49 -26.73 -0.15 -1.91 16 13 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 16 14 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 15 C -0.13 -2.28 5.50 -26.70 -0.15 -2.43 16 16 C 0.17 3.22 2.30 -67.90 -0.16 3.06 16 17 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 18 N -0.72 -17.15 4.95 -53.40 -0.26 -17.42 16 19 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 20 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 23 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 N -0.41 -5.93 11.54 30.38 0.35 -5.58 16 28 O 0.10 1.19 11.19 17.05 0.19 1.38 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.41 6.14 8.60 -40.82 -0.35 5.79 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -33.36 378.12 -7.61 -40.97 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -6.95 Total: 12.28 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.47 Total: 0.22 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.55 Total: -61.65 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.42 Total: -14.47 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.36 -7.61 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226903456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.215 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds