Wall clock time and date at job start Tue Mar 31 2020 13:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47246 * 2 1 4 4 C 1.34228 * 117.00206 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00287 * 0.02562 * 4 3 2 6 6 C 1.50708 * 120.00061 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47060 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.46858 * 55.00329 * 7 6 4 9 9 C 1.50704 * 109.46985 * 174.99952 * 7 6 4 10 10 H 1.07995 * 120.00072 * 240.00187 * 9 7 6 11 11 C 1.37880 * 119.99717 * 60.00229 * 9 7 6 12 12 N 1.31521 * 120.00083 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 119.99929 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47336 * 90.00305 * 13 11 9 15 15 H 1.48504 * 109.47030 * 210.00023 * 13 11 9 16 16 H 1.48497 * 109.47362 * 330.00007 * 13 11 9 17 17 O 1.42899 * 109.47295 * 295.00462 * 7 6 4 18 18 C 1.35904 * 117.00097 * 155.88755 * 17 7 6 19 19 C 1.38781 * 120.44613 * 185.21962 * 18 17 7 20 20 N 1.31805 * 120.80461 * 179.97438 * 19 18 17 21 21 C 1.31838 * 121.83453 * 0.02562 * 20 19 18 22 22 C 1.38736 * 120.80279 * 359.97438 * 21 20 19 23 23 O 1.35914 * 120.44083 * 180.02562 * 22 21 20 24 24 C 1.42900 * 116.99909 * 174.66263 * 23 22 21 25 25 C 1.53005 * 109.46891 * 84.14195 * 24 23 22 26 26 C 1.52994 * 109.47117 * 204.13683 * 24 23 22 27 27 C 1.39005 * 120.44115 * 4.94199 * 18 17 7 28 28 H 1.09008 * 109.47104 * 299.99885 * 1 2 3 29 29 H 1.08996 * 109.47375 * 60.00371 * 1 2 3 30 30 H 1.09008 * 109.47046 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47173 * 239.99830 * 2 1 3 32 32 H 1.09005 * 109.47394 * 119.99553 * 2 1 3 33 33 H 1.09003 * 109.47129 * 300.00562 * 6 4 3 34 34 H 1.09008 * 109.46878 * 60.00099 * 6 4 3 35 35 H 0.96999 * 120.00236 * 180.02562 * 12 11 9 36 36 H 1.08003 * 119.60062 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.59667 * 179.97438 * 21 20 19 38 38 H 1.09004 * 109.47576 * 324.14342 * 24 23 22 39 39 H 1.08995 * 109.47121 * 299.99690 * 25 24 23 40 40 H 1.09001 * 109.47094 * 60.00201 * 25 24 23 41 41 H 1.08998 * 109.47215 * 179.97438 * 25 24 23 42 42 H 1.09001 * 109.46920 * 60.00598 * 26 24 23 43 43 H 1.09008 * 109.47199 * 179.97438 * 26 24 23 44 44 H 1.09001 * 109.47721 * 300.00321 * 26 24 23 45 45 H 1.08001 * 120.83523 * 0.02832 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8574 0.0014 8 1 5.7813 2.2491 -0.8397 9 6 6.0244 4.2445 -0.1230 10 1 6.6599 4.4923 -0.9603 11 6 5.7399 5.1972 0.8323 12 7 4.9664 4.8953 1.8522 13 14 6.4542 6.9163 0.6785 14 1 5.5207 7.7728 -0.0963 15 1 6.6482 7.4946 2.0325 16 1 7.7614 6.8484 -0.0227 17 8 5.8934 2.2647 1.2232 18 6 7.1112 1.6616 1.2090 19 6 7.5668 0.9703 2.3228 20 7 8.7464 0.3824 2.3165 21 6 9.5387 0.4244 1.2636 22 6 9.1546 1.0957 0.1118 23 8 9.9770 1.1338 -0.9696 24 6 9.4620 1.7434 -2.1551 25 6 9.6604 3.2585 -2.0769 26 6 10.2046 1.1942 -3.3748 27 6 7.9148 1.7241 0.0765 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.5851 3.4691 -0.8904 34 1 3.5843 3.4701 0.8896 35 1 4.7659 5.5656 2.5241 36 1 6.9471 0.9134 3.2056 37 1 10.4983 -0.0699 1.2981 38 1 8.3989 1.5204 -2.2460 39 1 9.1314 3.6498 -1.2080 40 1 10.7234 3.4816 -1.9861 41 1 9.2680 3.7235 -2.9813 42 1 10.0632 0.1148 -3.4305 43 1 9.8114 1.6588 -4.2791 44 1 11.2676 1.4172 -3.2840 45 1 7.5863 2.2512 -0.8071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229516624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:18 Heat of formation + Delta-G solvation = -139.287563 kcal Electronic energy + Delta-G solvation = -28569.734316 eV Core-core repulsion = 24553.174010 eV Total energy + Delta-G solvation = -4016.560307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27040 -39.81509 -38.34399 -37.14832 -35.94260 -33.41460 -33.02039 -31.65389 -30.74253 -30.31557 -28.80026 -27.16322 -26.46602 -23.85397 -23.24769 -22.44811 -21.58816 -20.78644 -19.84654 -18.37493 -17.33062 -16.76510 -16.26860 -16.16545 -16.04850 -15.62692 -15.38545 -15.18851 -14.72688 -14.16532 -13.98477 -13.76852 -13.63589 -13.13764 -12.89612 -12.75748 -12.59001 -12.45804 -12.29387 -12.13766 -11.96729 -11.81312 -11.63703 -11.45093 -11.30280 -11.18680 -11.11803 -10.90963 -10.70769 -10.63571 -10.49871 -10.19855 -9.82391 -9.60023 -9.42932 -9.11690 -8.83717 -8.26820 -7.27664 -6.35575 -4.57284 1.91944 2.11453 2.92968 3.10118 3.20366 3.21498 3.25950 3.46150 4.14418 4.34358 4.54073 4.92183 5.00246 5.04605 5.05195 5.10881 5.21997 5.29976 5.33324 5.42116 5.43698 5.59746 5.63592 5.69548 5.76205 5.84140 5.85900 5.86568 5.92266 6.02843 6.12906 6.18645 6.22680 6.29822 6.41770 6.53466 6.71001 6.87363 6.94507 7.05814 7.21003 7.52211 7.68888 7.73203 8.32509 8.43826 8.58572 8.76180 9.21151 10.65794 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008680 B = 0.005164 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.014590 B = 5421.363845 C = 6822.149924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.456 3.544 5 O -0.515 6.515 6 C -0.101 4.101 7 C 0.224 3.776 8 H 0.030 0.970 9 C -0.564 4.564 10 H 0.068 0.932 11 C 0.088 3.912 12 N -0.855 5.855 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.271 1.271 17 O -0.278 6.278 18 C 0.179 3.821 19 C 0.007 3.993 20 N -0.418 5.418 21 C -0.006 4.006 22 C 0.115 3.885 23 O -0.310 6.310 24 C 0.077 3.923 25 C -0.182 4.182 26 C -0.145 4.145 27 C -0.257 4.257 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.142 0.858 35 H 0.270 0.730 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 -5.010 -6.956 8.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.403 6.403 6 C -0.139 4.139 7 C 0.170 3.830 8 H 0.048 0.952 9 C -0.601 4.601 10 H 0.086 0.914 11 C -0.121 4.121 12 N -0.489 5.489 13 Si 0.722 3.278 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.195 1.195 17 O -0.187 6.187 18 C 0.127 3.873 19 C -0.153 4.153 20 N -0.128 5.128 21 C -0.164 4.164 22 C 0.067 3.933 23 O -0.223 6.223 24 C 0.020 3.980 25 C -0.239 4.239 26 C -0.202 4.202 27 C -0.283 4.283 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.159 0.841 35 H 0.080 0.920 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.529 -5.728 -5.946 8.274 hybrid contribution -0.099 1.507 -1.020 1.822 sum -0.628 -4.222 -6.967 8.170 Atomic orbital electron populations 1.21780 0.93244 1.02377 1.03338 1.22867 0.94891 0.81674 1.02089 1.86569 1.26032 1.31089 1.84681 1.24864 0.79584 0.94251 0.71240 1.90604 1.60219 1.43627 1.45812 1.21826 0.96340 0.88294 1.07407 1.19828 0.88935 0.92549 0.81685 0.95225 1.21353 1.33254 0.94804 1.10655 0.91384 1.25031 0.93671 0.99051 0.94306 1.69844 1.33849 1.34546 1.10671 0.86537 0.79827 0.83553 0.77918 1.20120 1.20749 1.19541 1.86265 1.28062 1.65188 1.39166 1.19932 0.86635 0.88048 0.92724 1.21916 0.94195 1.00976 0.98213 1.67548 1.03376 1.15775 1.26059 1.21650 1.01340 1.05204 0.88205 1.19973 0.89676 0.95227 0.88378 1.86048 1.41039 1.75883 1.19326 1.22395 0.98788 0.93136 0.83664 1.22398 1.02905 0.94893 1.03750 1.21831 1.01176 1.01677 0.95542 1.21904 0.95864 1.08644 1.01925 0.91558 0.91720 0.90797 0.91894 0.91646 0.87822 0.84063 0.92021 0.82875 0.83266 0.90924 0.90682 0.91900 0.91204 0.91883 0.90708 0.91661 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.16 0.38 -1.19 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -6.52 10.22 -39.25 -0.40 -6.93 16 4 C 0.46 9.34 7.84 36.01 0.28 9.62 16 5 O -0.51 -11.64 15.17 -24.04 -0.36 -12.00 16 6 C -0.10 -2.15 5.22 -27.88 -0.15 -2.30 16 7 C 0.22 5.19 1.35 -27.88 -0.04 5.15 16 8 H 0.03 0.68 6.19 -51.93 -0.32 0.36 16 9 C -0.56 -13.60 7.99 -34.44 -0.28 -13.88 16 10 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.09 2.15 5.24 -17.82 -0.09 2.06 16 12 N -0.85 -21.72 10.93 55.43 0.61 -21.12 16 13 Si 0.90 19.34 29.54 -169.99 -5.02 14.32 16 14 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 O -0.28 -6.83 8.44 -33.85 -0.29 -7.11 16 18 C 0.18 4.11 6.60 -39.10 -0.26 3.85 16 19 C 0.01 0.15 11.13 -17.36 -0.19 -0.04 16 20 N -0.42 -8.61 10.35 -13.00 -0.13 -8.74 16 21 C -0.01 -0.12 11.13 -17.36 -0.19 -0.31 16 22 C 0.11 2.23 6.61 -39.10 -0.26 1.97 16 23 O -0.31 -5.33 9.81 -19.47 -0.19 -5.52 16 24 C 0.08 1.12 2.85 -26.73 -0.08 1.05 16 25 C -0.18 -2.64 9.17 37.16 0.34 -2.30 16 26 C -0.15 -1.62 9.56 37.15 0.36 -1.27 16 27 C -0.26 -5.42 6.92 -39.00 -0.27 -5.69 16 28 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 34 H 0.14 3.27 6.22 -51.92 -0.32 2.95 16 35 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 36 H 0.15 3.11 8.06 -52.48 -0.42 2.69 16 37 H 0.15 2.43 8.06 -52.49 -0.42 2.01 16 38 H 0.07 1.13 6.38 -51.93 -0.33 0.79 16 39 H 0.07 1.31 6.86 -51.93 -0.36 0.95 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.15 3.10 3.34 -52.49 -0.18 2.93 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -28.44 374.67 -6.90 -35.35 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.55 Total: 8.31 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.21 Total: -2.20 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 0.47 Total: -29.86 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -1.24 Total: -31.56 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.44 -6.90 -35.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229516624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.941 kcal (2) G-P(sol) polarization free energy of solvation -28.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds