Wall clock time and date at job start Tue Mar 31 2020 14:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81406 * 102.99734 * 2 1 4 4 C 1.50701 * 109.46988 * 179.97438 * 3 2 1 5 5 O 1.21286 * 120.00196 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00133 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00185 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47226 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47176 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.47111 * 180.02562 * 9 8 7 11 11 C 1.36931 * 119.99937 * 89.99564 * 10 9 8 12 12 H 1.08004 * 120.00579 * 319.92655 * 11 10 9 13 13 C 1.38817 * 120.00022 * 139.92132 * 11 10 9 14 14 N 1.31623 * 119.99798 * 340.17290 * 13 11 10 15 15 Si 1.86799 * 120.00081 * 160.16786 * 13 11 10 16 16 H 1.48499 * 109.47009 * 90.00553 * 15 13 11 17 17 H 1.48503 * 109.47216 * 210.00302 * 15 13 11 18 18 H 1.48494 * 109.47112 * 330.00124 * 15 13 11 19 19 C 1.46499 * 119.99671 * 269.99971 * 10 9 8 20 20 C 1.50697 * 109.47197 * 88.02046 * 19 10 9 21 21 C 1.38678 * 120.41600 * 263.13575 * 20 19 10 22 22 C 1.38630 * 118.41941 * 179.77932 * 21 20 19 23 23 C 1.38224 * 119.16093 * 0.51898 * 22 21 20 24 24 N 1.31846 * 120.76527 * 359.72480 * 23 22 21 25 25 C 1.31889 * 121.72618 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47244 * 300.00070 * 1 2 3 27 27 H 1.09002 * 109.47028 * 60.00434 * 1 2 3 28 28 H 1.09001 * 109.47131 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46963 * 59.99958 * 3 2 1 30 30 H 1.09002 * 109.47335 * 299.99532 * 3 2 1 31 31 H 0.97000 * 119.99807 * 359.97438 * 6 4 3 32 32 H 1.09003 * 109.47145 * 59.99695 * 7 6 4 33 33 H 1.08995 * 109.47490 * 299.99892 * 7 6 4 34 34 H 1.09003 * 109.46981 * 59.99994 * 8 7 6 35 35 H 1.09004 * 109.47059 * 300.00288 * 8 7 6 36 36 H 1.08998 * 109.46629 * 299.99668 * 9 8 7 37 37 H 1.08996 * 109.47272 * 60.00417 * 9 8 7 38 38 H 0.96997 * 120.00049 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.46886 * 208.01251 * 19 10 9 40 40 H 1.08993 * 109.47315 * 328.01433 * 19 10 9 41 41 H 1.07997 * 120.79092 * 0.02650 * 21 20 19 42 42 H 1.08001 * 120.41744 * 180.21725 * 22 21 20 43 43 H 1.07999 * 119.61475 * 179.74108 * 23 22 21 44 44 H 1.08003 * 119.62071 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7194 1.9375 0.0006 5 8 4.4404 0.9622 0.0015 6 7 4.2574 3.1732 0.0013 7 6 5.7131 3.3383 0.0025 8 6 6.0572 4.8291 0.0023 9 6 7.5775 5.0016 0.0029 10 7 7.9070 6.4291 0.0034 11 6 8.0605 7.0959 1.1895 12 1 7.3948 6.8903 2.0148 13 6 9.0718 8.0361 1.3314 14 7 10.1033 8.0216 0.5138 15 14 8.9689 9.3220 2.6824 16 1 9.6200 8.8018 3.9115 17 1 9.6611 10.5597 2.2415 18 1 7.5439 9.6268 2.9681 19 6 8.0722 7.1431 -1.2651 20 6 6.7357 7.6659 -1.7250 21 6 5.9840 6.9554 -2.6488 22 6 4.7585 7.4722 -3.0395 23 6 4.3344 8.6754 -2.5074 24 7 5.0780 9.3263 -1.6347 25 6 6.2462 8.8618 -1.2358 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8030 2.2371 0.8900 30 1 1.8031 2.2372 -0.8900 31 1 3.6808 3.9532 0.0009 32 1 6.1327 2.8688 -0.8873 33 1 6.1313 2.8686 0.8926 34 1 5.6375 5.2989 0.8919 35 1 5.6390 5.2985 -0.8881 36 1 7.9959 4.5322 0.8932 37 1 7.9968 4.5319 -0.8868 38 1 10.8098 8.6788 0.6127 39 1 8.7601 7.9771 -1.1257 40 1 8.4739 6.4623 -2.0155 41 1 6.3430 6.0196 -3.0511 42 1 4.1450 6.9439 -3.7543 43 1 3.3828 9.0868 -2.8098 44 1 6.8273 9.4231 -0.5190 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230662514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:19 Heat of formation + Delta-G solvation = 13.328445 kcal Electronic energy + Delta-G solvation = -24703.434703 eV Core-core repulsion = 21168.537945 eV Total energy + Delta-G solvation = -3534.896758 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.68008 -39.53736 -36.50424 -35.00620 -32.35872 -32.24281 -31.26166 -30.66180 -29.43477 -28.87364 -25.95363 -25.27339 -22.93524 -22.66039 -21.27879 -20.85978 -20.14387 -17.28572 -16.98792 -16.71229 -16.49515 -15.96613 -15.77385 -15.50055 -14.95044 -14.77871 -14.40720 -14.05907 -13.92525 -13.88713 -13.56946 -13.41549 -13.12615 -12.90886 -12.73085 -12.54560 -12.52343 -12.08308 -11.79512 -11.32799 -11.21709 -11.09375 -10.81694 -10.71004 -10.26500 -10.25118 -10.20564 -10.05923 -9.99204 -9.21940 -9.06957 -8.94361 -8.62401 -8.32557 -7.92586 -6.74129 -5.97588 -3.57177 1.18978 1.68304 1.81583 2.24880 2.48881 3.14224 3.27280 3.36330 3.39686 4.29622 4.41281 4.54509 4.67585 4.78346 4.80694 4.89352 4.96990 5.13595 5.19489 5.24405 5.35449 5.39218 5.47307 5.59355 5.67734 5.78026 5.80090 6.02460 6.06840 6.11347 6.33702 6.35626 6.47526 6.52706 6.64169 6.70420 6.91754 6.99262 7.26314 7.38559 7.42962 7.68244 8.09107 8.36001 8.52938 9.00479 9.60505 10.20257 11.03555 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.002985 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.841607 B = 9377.416118 C =10567.147251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.185 6.185 3 C -0.129 4.129 4 C 0.525 3.475 5 O -0.522 6.522 6 N -0.722 5.722 7 C 0.122 3.878 8 C -0.153 4.153 9 C 0.153 3.847 10 N -0.571 5.571 11 C -0.265 4.265 12 H 0.060 0.940 13 C 0.019 3.981 14 N -0.881 5.881 15 Si 0.893 3.107 16 H -0.284 1.284 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.180 3.820 20 C -0.118 4.118 21 C -0.085 4.085 22 C -0.182 4.182 23 C 0.068 3.932 24 N -0.492 5.492 25 C 0.113 3.887 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.400 0.600 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.037 0.963 38 H 0.258 0.742 39 H 0.102 0.898 40 H 0.038 0.962 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.141 0.859 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.971 -7.635 -5.043 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.039 5.961 3 C -0.280 4.280 4 C 0.309 3.691 5 O -0.398 6.398 6 N -0.374 5.374 7 C -0.002 4.002 8 C -0.194 4.194 9 C 0.026 3.974 10 N -0.289 5.289 11 C -0.394 4.394 12 H 0.077 0.923 13 C -0.182 4.182 14 N -0.521 5.521 15 Si 0.721 3.279 16 H -0.210 1.210 17 H -0.212 1.212 18 H -0.200 1.200 19 C 0.053 3.947 20 C -0.123 4.123 21 C -0.112 4.112 22 C -0.202 4.202 23 C -0.090 4.090 24 N -0.200 5.200 25 C -0.044 4.044 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.234 0.766 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.120 0.880 40 H 0.056 0.944 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.158 0.842 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.832 -8.316 -4.681 17.637 hybrid contribution -1.138 1.423 0.321 1.850 sum -15.970 -6.894 -4.360 17.933 Atomic orbital electron populations 1.23539 0.96033 1.06711 1.04863 1.87565 1.04347 1.06176 1.98008 1.23543 0.98093 0.99284 1.07071 1.19623 0.88665 0.83784 0.77007 1.90757 1.61980 1.38465 1.48612 1.46034 1.08999 1.07274 1.75047 1.21484 0.78304 0.98284 1.02123 1.22572 1.01983 0.92317 1.02499 1.20763 0.90325 0.86673 0.99688 1.43635 1.80678 1.02828 1.01743 1.18952 1.09687 1.19373 0.91428 0.92283 1.25257 0.94116 1.01121 0.97723 1.69995 1.07667 1.35221 1.39238 0.86465 0.78151 0.81369 0.81878 1.21008 1.21216 1.19995 1.19954 0.89722 0.98277 0.86703 1.22294 1.01462 0.94568 0.94018 1.21445 0.93985 0.99201 0.96537 1.21957 0.97666 0.98183 1.02360 1.22470 0.99020 0.92671 0.94800 1.67642 1.06233 1.34465 1.11682 1.22693 0.91319 0.93790 0.96617 0.90503 0.90521 0.87785 0.87253 0.87274 0.76565 0.91675 0.91465 0.91743 0.91829 0.92706 0.94443 0.93186 0.88010 0.94398 0.86011 0.86178 0.84163 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 10.76 101.05 1.09 0.19 16 2 S -0.19 -1.99 21.52 -107.50 -2.31 -4.31 16 3 C -0.13 -1.18 6.42 36.01 0.23 -0.95 16 4 C 0.53 6.79 7.85 -10.99 -0.09 6.70 16 5 O -0.52 -8.99 15.87 5.55 0.09 -8.91 16 6 N -0.72 -8.52 5.56 -60.29 -0.33 -8.85 16 7 C 0.12 1.69 5.67 -4.04 -0.02 1.66 16 8 C -0.15 -2.36 5.62 -26.73 -0.15 -2.52 16 9 C 0.15 2.84 5.71 -4.04 -0.02 2.82 16 10 N -0.57 -12.56 2.39 -174.61 -0.42 -12.98 16 11 C -0.26 -6.55 9.44 -15.06 -0.14 -6.69 16 12 H 0.06 1.49 7.90 -52.48 -0.41 1.08 16 13 C 0.02 0.49 4.95 -17.43 -0.09 0.41 16 14 N -0.88 -23.36 11.59 55.49 0.64 -22.72 16 15 Si 0.89 20.22 29.60 -169.99 -5.03 15.19 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.18 3.76 5.47 -5.20 -0.03 3.73 16 20 C -0.12 -2.19 5.17 -104.48 -0.54 -2.73 16 21 C -0.08 -1.32 8.00 -39.27 -0.31 -1.63 16 22 C -0.18 -2.51 10.11 -39.44 -0.40 -2.91 16 23 C 0.07 1.02 11.18 -17.55 -0.20 0.83 16 24 N -0.49 -9.01 10.36 -13.25 -0.14 -9.14 16 25 C 0.11 2.21 10.89 -17.55 -0.19 2.02 16 26 H 0.08 0.41 8.14 -51.92 -0.42 -0.02 16 27 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.11 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.40 3.80 8.47 -40.82 -0.35 3.45 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.98 5.85 -51.93 -0.30 0.68 16 36 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 37 H 0.04 0.66 7.91 -51.93 -0.41 0.25 16 38 H 0.26 6.65 8.31 -40.82 -0.34 6.32 16 39 H 0.10 2.44 5.66 -51.93 -0.29 2.14 16 40 H 0.04 0.75 7.83 -51.93 -0.41 0.34 16 41 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 44 H 0.15 3.16 8.06 -52.48 -0.42 2.73 16 LS Contribution 382.78 15.07 5.77 5.77 Total: -1.00 -30.07 382.78 -9.40 -39.47 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.80 Total: 5.55 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.86 Total: 0.93 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.25 Total: -53.69 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -2.31 Total: -4.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.07 -9.40 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230662514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.799 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds