Wall clock time and date at job start Tue Mar 31 2020 14:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81406 * 102.99734 * 2 1 4 4 C 1.50701 * 109.46988 * 179.97438 * 3 2 1 5 5 O 1.21286 * 120.00196 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00133 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00185 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47226 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47176 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.47111 * 180.02562 * 9 8 7 11 11 C 1.36931 * 119.99937 * 89.99564 * 10 9 8 12 12 H 1.08004 * 120.00579 * 319.92655 * 11 10 9 13 13 C 1.38817 * 120.00022 * 139.92132 * 11 10 9 14 14 N 1.31623 * 119.99798 * 340.17290 * 13 11 10 15 15 Si 1.86799 * 120.00081 * 160.16786 * 13 11 10 16 16 H 1.48499 * 109.47009 * 90.00553 * 15 13 11 17 17 H 1.48503 * 109.47216 * 210.00302 * 15 13 11 18 18 H 1.48494 * 109.47112 * 330.00124 * 15 13 11 19 19 C 1.46499 * 119.99671 * 269.99971 * 10 9 8 20 20 C 1.50697 * 109.47197 * 88.02046 * 19 10 9 21 21 C 1.38678 * 120.41600 * 263.13575 * 20 19 10 22 22 C 1.38630 * 118.41941 * 179.77932 * 21 20 19 23 23 C 1.38224 * 119.16093 * 0.51898 * 22 21 20 24 24 N 1.31846 * 120.76527 * 359.72480 * 23 22 21 25 25 C 1.31889 * 121.72618 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47244 * 300.00070 * 1 2 3 27 27 H 1.09002 * 109.47028 * 60.00434 * 1 2 3 28 28 H 1.09001 * 109.47131 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46963 * 59.99958 * 3 2 1 30 30 H 1.09002 * 109.47335 * 299.99532 * 3 2 1 31 31 H 0.97000 * 119.99807 * 359.97438 * 6 4 3 32 32 H 1.09003 * 109.47145 * 59.99695 * 7 6 4 33 33 H 1.08995 * 109.47490 * 299.99892 * 7 6 4 34 34 H 1.09003 * 109.46981 * 59.99994 * 8 7 6 35 35 H 1.09004 * 109.47059 * 300.00288 * 8 7 6 36 36 H 1.08998 * 109.46629 * 299.99668 * 9 8 7 37 37 H 1.08996 * 109.47272 * 60.00417 * 9 8 7 38 38 H 0.96997 * 120.00049 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.46886 * 208.01251 * 19 10 9 40 40 H 1.08993 * 109.47315 * 328.01433 * 19 10 9 41 41 H 1.07997 * 120.79092 * 0.02650 * 21 20 19 42 42 H 1.08001 * 120.41744 * 180.21725 * 22 21 20 43 43 H 1.07999 * 119.61475 * 179.74108 * 23 22 21 44 44 H 1.08003 * 119.62071 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7194 1.9375 0.0006 5 8 4.4404 0.9622 0.0015 6 7 4.2574 3.1732 0.0013 7 6 5.7131 3.3383 0.0025 8 6 6.0572 4.8291 0.0023 9 6 7.5775 5.0016 0.0029 10 7 7.9070 6.4291 0.0034 11 6 8.0605 7.0959 1.1895 12 1 7.3948 6.8903 2.0148 13 6 9.0718 8.0361 1.3314 14 7 10.1033 8.0216 0.5138 15 14 8.9689 9.3220 2.6824 16 1 9.6200 8.8018 3.9115 17 1 9.6611 10.5597 2.2415 18 1 7.5439 9.6268 2.9681 19 6 8.0722 7.1431 -1.2651 20 6 6.7357 7.6659 -1.7250 21 6 5.9840 6.9554 -2.6488 22 6 4.7585 7.4722 -3.0395 23 6 4.3344 8.6754 -2.5074 24 7 5.0780 9.3263 -1.6347 25 6 6.2462 8.8618 -1.2358 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8030 2.2371 0.8900 30 1 1.8031 2.2372 -0.8900 31 1 3.6808 3.9532 0.0009 32 1 6.1327 2.8688 -0.8873 33 1 6.1313 2.8686 0.8926 34 1 5.6375 5.2989 0.8919 35 1 5.6390 5.2985 -0.8881 36 1 7.9959 4.5322 0.8932 37 1 7.9968 4.5319 -0.8868 38 1 10.8098 8.6788 0.6127 39 1 8.7601 7.9771 -1.1257 40 1 8.4739 6.4623 -2.0155 41 1 6.3430 6.0196 -3.0511 42 1 4.1450 6.9439 -3.7543 43 1 3.3828 9.0868 -2.8098 44 1 6.8273 9.4231 -0.5190 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230662514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:18 Heat of formation + Delta-G solvation = -5.093005 kcal Electronic energy + Delta-G solvation = -24704.233517 eV Core-core repulsion = 21168.537945 eV Total energy + Delta-G solvation = -3535.695572 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.92406 -40.67416 -38.03476 -36.28358 -33.98136 -33.56079 -32.62710 -31.81125 -30.48655 -29.52647 -27.58590 -26.74366 -24.26341 -24.07702 -22.58326 -22.13317 -21.49288 -18.73011 -18.24146 -17.81685 -17.62719 -17.17846 -16.97475 -16.72401 -16.38772 -16.03273 -15.78886 -15.28924 -15.16964 -14.71503 -14.58472 -14.51892 -14.38176 -14.26896 -13.80718 -13.61878 -13.53555 -13.31873 -13.10524 -12.89638 -12.84359 -12.60024 -12.45039 -12.35255 -11.99709 -11.83417 -11.56733 -11.14343 -10.92295 -10.57723 -10.47329 -10.21306 -10.15354 -9.68923 -8.70606 -8.56460 -7.87142 -5.50518 0.40125 0.50631 0.53744 1.42835 1.48055 1.52066 1.55155 1.64590 2.18385 2.48559 3.02726 3.24713 3.69202 3.72186 3.73427 4.05297 4.11338 4.14095 4.20437 4.25862 4.29580 4.32888 4.39059 4.39487 4.42587 4.49286 4.66168 4.73629 4.83428 4.93646 4.95845 5.05728 5.07456 5.30177 5.35173 5.37579 5.48808 5.53502 5.69500 5.71101 6.01767 6.44340 6.47604 7.14570 7.15349 7.22196 7.80679 8.35068 9.09547 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.002985 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.841607 B = 9377.416118 C =10567.147251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.272 6.272 3 C -0.108 4.108 4 C 0.522 3.478 5 O -0.571 6.571 6 N -0.711 5.711 7 C 0.133 3.867 8 C -0.127 4.127 9 C 0.149 3.851 10 N -0.585 5.585 11 C -0.262 4.262 12 H 0.050 0.950 13 C -0.022 4.022 14 N -0.910 5.910 15 Si 0.943 3.057 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.274 1.274 19 C 0.188 3.812 20 C -0.130 4.130 21 C -0.079 4.079 22 C -0.161 4.161 23 C 0.070 3.930 24 N -0.514 5.514 25 C 0.090 3.910 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.415 0.585 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.048 0.952 38 H 0.253 0.747 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.143 0.857 42 H 0.167 0.833 43 H 0.179 0.821 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.729 -8.004 -6.641 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.048 6.048 3 C -0.259 4.259 4 C 0.307 3.693 5 O -0.450 6.450 6 N -0.363 5.363 7 C 0.008 3.992 8 C -0.167 4.167 9 C 0.023 3.977 10 N -0.305 5.305 11 C -0.393 4.393 12 H 0.068 0.932 13 C -0.221 4.221 14 N -0.553 5.553 15 Si 0.771 3.229 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.199 1.199 19 C 0.061 3.939 20 C -0.135 4.135 21 C -0.106 4.106 22 C -0.181 4.181 23 C -0.088 4.088 24 N -0.223 5.223 25 C -0.066 4.066 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.153 0.847 30 H 0.158 0.842 31 H 0.252 0.748 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.161 0.839 42 H 0.185 0.815 43 H 0.196 0.804 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.630 -8.666 -6.278 21.484 hybrid contribution -0.107 1.500 0.713 1.664 sum -18.737 -7.166 -5.565 20.818 Atomic orbital electron populations 1.23548 0.91300 1.07697 1.06318 1.87888 1.09630 1.08971 1.98282 1.23457 0.94957 0.97781 1.09703 1.20264 0.90261 0.83046 0.75685 1.90744 1.63513 1.40012 1.50748 1.45859 1.08149 1.07847 1.74462 1.21186 0.79826 0.96679 1.01489 1.22193 0.99172 0.93278 1.02105 1.20837 0.92572 0.84861 0.99408 1.43775 1.81235 1.04128 1.01335 1.19036 1.08784 1.19221 0.92239 0.93238 1.25756 0.94132 1.02724 0.99464 1.70091 1.08380 1.35945 1.40888 0.85678 0.77793 0.79490 0.79918 1.21063 1.21642 1.19918 1.19695 0.90748 0.97042 0.86380 1.21913 1.00566 0.95054 0.95934 1.21672 0.94286 0.99477 0.95184 1.22382 0.96777 0.97309 1.01594 1.23187 0.99617 0.92869 0.93122 1.67607 1.06050 1.35518 1.13168 1.22315 0.92308 0.94482 0.97508 0.89107 0.88894 0.87072 0.84702 0.84245 0.74834 0.91724 0.92897 0.93132 0.91011 0.94414 0.93340 0.93729 0.91629 0.93784 0.83942 0.81549 0.80443 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.76 113.37 1.22 0.08 16 2 S -0.27 -5.45 21.52 -56.49 -1.22 -6.67 16 3 C -0.11 -1.65 6.42 71.24 0.46 -1.19 16 4 C 0.52 12.51 7.85 87.66 0.69 13.20 16 5 O -0.57 -19.49 15.87 -3.05 -0.05 -19.54 16 6 N -0.71 -15.10 5.56 -463.06 -2.57 -17.67 16 7 C 0.13 3.52 5.67 86.38 0.49 4.01 16 8 C -0.13 -3.78 5.62 30.59 0.17 -3.61 16 9 C 0.15 5.59 5.71 86.38 0.49 6.08 16 10 N -0.59 -26.35 2.39 -706.35 -1.69 -28.04 16 11 C -0.26 -13.41 9.44 84.04 0.79 -12.62 16 12 H 0.05 2.58 7.90 -2.91 -0.02 2.56 16 13 C -0.02 -1.17 4.95 84.86 0.42 -0.75 16 14 N -0.91 -50.44 11.59 21.65 0.25 -50.19 16 15 Si 0.94 43.15 29.60 68.60 2.03 45.18 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 C 0.19 8.03 5.47 85.63 0.47 8.50 16 20 C -0.13 -4.75 5.17 -19.77 -0.10 -4.85 16 21 C -0.08 -2.21 8.00 22.47 0.18 -2.03 16 22 C -0.16 -3.63 10.11 22.36 0.23 -3.41 16 23 C 0.07 1.82 11.18 84.69 0.95 2.77 16 24 N -0.51 -18.13 10.36 -195.85 -2.03 -20.16 16 25 C 0.09 3.56 10.89 84.67 0.92 4.48 16 26 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 28 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.42 6.44 8.47 -92.71 -0.79 5.65 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 2.03 5.85 -2.38 -0.01 2.01 16 36 H 0.04 1.51 8.04 -2.39 -0.02 1.49 16 37 H 0.05 1.69 7.91 -2.39 -0.02 1.67 16 38 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 39 H 0.07 3.31 5.66 -2.38 -0.01 3.30 16 40 H 0.04 1.76 7.83 -2.39 -0.02 1.74 16 41 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 43 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 44 H 0.12 5.36 8.06 -2.91 -0.02 5.34 16 Total: -1.00 -69.96 382.78 2.31 -67.65 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.21 Total: 18.78 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 7.37 Total: 10.65 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -6.04 Total: -116.06 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.54 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -1.22 Total: -6.67 kcal Total: -69.96 2.31 -67.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230662514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.554 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds