Wall clock time and date at job start Tue Mar 31 2020 13:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.46923 * 2 1 4 4 C 1.34225 * 116.99568 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00324 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99648 * 180.02562 * 4 3 2 7 7 N 1.46901 * 109.47080 * 174.23391 * 6 4 3 8 8 C 1.46896 * 111.00038 * 287.88396 * 7 6 4 9 9 C 1.50697 * 109.47001 * 295.54691 * 8 7 6 10 10 H 1.07996 * 119.99900 * 5.24444 * 9 8 7 11 11 C 1.37885 * 119.99758 * 185.23968 * 9 8 7 12 12 N 1.31510 * 119.99966 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99699 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47463 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47277 * 120.00316 * 13 11 9 16 16 H 1.48507 * 109.46868 * 239.99836 * 13 11 9 17 17 C 1.46901 * 110.99993 * 163.92821 * 7 6 4 18 18 C 1.50701 * 109.47241 * 189.99827 * 17 7 6 19 19 C 1.38200 * 119.93972 * 90.00057 * 18 17 7 20 20 C 1.38756 * 120.04938 * 179.97438 * 19 18 17 21 21 O 1.35901 * 120.02521 * 180.02562 * 20 19 18 22 22 C 1.38650 * 119.94722 * 0.02562 * 20 19 18 23 23 C 1.38611 * 119.89313 * 0.02562 * 22 20 19 24 24 O 1.35893 * 120.03005 * 180.02562 * 23 22 20 25 25 C 1.42894 * 117.00318 * 0.02562 * 24 23 22 26 26 C 1.38147 * 119.94733 * 270.30512 * 18 17 7 27 27 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46846 * 299.99896 * 1 2 3 29 29 H 1.08999 * 109.47463 * 59.99818 * 1 2 3 30 30 H 1.08991 * 109.46983 * 240.00258 * 2 1 3 31 31 H 1.09000 * 109.46965 * 120.00016 * 2 1 3 32 32 H 1.08996 * 109.47844 * 54.23260 * 6 4 3 33 33 H 1.09006 * 109.46801 * 294.23216 * 6 4 3 34 34 H 1.09003 * 109.47113 * 55.55338 * 8 7 6 35 35 H 1.09001 * 109.47263 * 175.54481 * 8 7 6 36 36 H 0.97000 * 119.99735 * 180.02562 * 12 11 9 37 37 H 1.09003 * 109.47118 * 70.00331 * 17 7 6 38 38 H 1.08995 * 109.47209 * 310.00114 * 17 7 6 39 39 H 1.07994 * 119.98002 * 0.02562 * 19 18 17 40 40 H 0.96701 * 113.99309 * 269.97164 * 21 20 19 41 41 H 1.08003 * 120.05822 * 180.02562 * 22 20 19 42 42 H 1.09007 * 109.47119 * 300.00291 * 25 24 23 43 43 H 1.09004 * 109.47273 * 60.00118 * 25 24 23 44 44 H 1.08997 * 109.47590 * 179.97438 * 25 24 23 45 45 H 1.08007 * 119.97750 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3813 2.8632 0.1384 8 6 5.7615 2.4656 1.5005 9 6 5.3291 3.5316 2.4740 10 1 4.7488 4.3745 2.1291 11 6 5.6745 3.4306 3.8051 12 7 6.3816 2.4043 4.2249 13 14 5.1380 4.7516 5.0119 14 1 4.3593 5.7920 4.2933 15 1 4.2924 4.1420 6.0695 16 1 6.3365 5.3714 5.6324 17 6 6.0108 4.1374 -0.2331 18 6 7.5043 3.9544 -0.3168 19 6 8.0877 3.5824 -1.5131 20 6 9.4627 3.4138 -1.5928 21 8 10.0359 3.0485 -2.7696 22 6 10.2512 3.6182 -0.4708 23 6 9.6636 3.9902 0.7281 24 8 10.4339 4.1919 1.8294 25 6 11.8423 4.0032 1.6793 26 6 8.2872 4.1526 0.8041 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5050 3.5024 0.8343 33 1 3.6693 3.4350 -0.9368 34 1 5.2748 1.5236 1.7532 35 1 6.8430 2.3415 1.5542 36 1 6.6242 2.3331 5.1614 37 1 5.7787 4.8906 0.5199 38 1 5.6297 4.4622 -1.2013 39 1 7.4731 3.4237 -2.3868 40 1 10.1105 2.0920 -2.8904 41 1 11.3217 3.4879 -0.5310 42 1 12.0404 2.9777 1.3671 43 1 12.2230 4.6924 0.9255 44 1 12.3382 4.1959 2.6306 45 1 7.8284 4.4389 1.7390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232806620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:44 Heat of formation + Delta-G solvation = -131.318098 kcal Electronic energy + Delta-G solvation = -27985.812818 eV Core-core repulsion = 23969.598093 eV Total energy + Delta-G solvation = -4016.214725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.05003 -39.81942 -38.06726 -37.34604 -36.04633 -35.07272 -32.51881 -31.61789 -30.65462 -29.50602 -27.93889 -27.08464 -26.58126 -24.38537 -23.09056 -22.07903 -21.81485 -20.58024 -19.69763 -18.10132 -17.13659 -16.71328 -16.51366 -16.23506 -16.10939 -15.60958 -15.46314 -15.39751 -14.84471 -14.54727 -14.43431 -14.08808 -13.69308 -13.41169 -13.19483 -12.82772 -12.55124 -12.38697 -12.06923 -12.03583 -11.75507 -11.72925 -11.38610 -11.24036 -11.07987 -10.95162 -10.82284 -10.75685 -10.52676 -10.42855 -10.37814 -10.16757 -9.96680 -9.72567 -9.59569 -8.44284 -8.28225 -7.72568 -7.30231 -6.03964 -4.14367 1.63854 1.82099 2.88964 3.07934 3.25732 3.34732 3.35660 3.58181 3.99577 4.38309 4.50242 5.01436 5.05405 5.10141 5.18233 5.23272 5.26129 5.29598 5.30718 5.42269 5.46126 5.59706 5.60651 5.70876 5.82545 5.84107 5.87491 5.90911 5.97813 6.03164 6.17651 6.27137 6.51666 6.72646 6.76033 6.90334 6.99339 7.13472 7.23139 7.54546 7.67091 7.86956 7.92368 7.94299 8.11519 8.22571 8.46924 8.95446 9.52131 11.00874 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.004590 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.655855 B = 6098.579661 C = 8280.140427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.466 3.534 5 O -0.487 6.487 6 C 0.068 3.932 7 N -0.523 5.523 8 C 0.181 3.819 9 C -0.559 4.559 10 H 0.058 0.942 11 C 0.072 3.928 12 N -0.880 5.880 13 Si 0.883 3.117 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.099 3.901 18 C -0.008 4.008 19 C -0.161 4.161 20 C 0.124 3.876 21 O -0.503 6.503 22 C -0.241 4.241 23 C 0.135 3.865 24 O -0.310 6.310 25 C 0.029 3.971 26 C -0.123 4.123 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.035 0.965 35 H 0.047 0.953 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.125 0.875 40 H 0.387 0.613 41 H 0.125 0.875 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.096 0.904 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 0.523 -9.898 9.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.307 3.693 5 O -0.372 6.372 6 C -0.062 4.062 7 N -0.248 5.248 8 C 0.056 3.944 9 C -0.598 4.598 10 H 0.076 0.924 11 C -0.132 4.132 12 N -0.517 5.517 13 Si 0.711 3.289 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.208 1.208 17 C -0.028 4.028 18 C -0.009 4.009 19 C -0.180 4.180 20 C 0.080 3.920 21 O -0.313 6.313 22 C -0.260 4.260 23 C 0.090 3.910 24 O -0.223 6.223 25 C -0.066 4.066 26 C -0.141 4.141 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.143 0.857 40 H 0.242 0.758 41 H 0.143 0.857 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.114 0.886 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.772 0.401 -9.959 9.997 hybrid contribution -0.193 0.358 1.367 1.426 sum 0.579 0.758 -8.592 8.645 Atomic orbital electron populations 1.21782 0.93188 1.02474 1.03287 1.22876 0.94820 0.81152 1.02325 1.86481 1.25602 1.31566 1.84980 1.23803 0.79753 0.93285 0.72436 1.90633 1.60013 1.42920 1.43645 1.21427 0.91473 0.89797 1.03470 1.62268 1.03731 1.27834 1.30957 1.19953 0.98249 0.95872 0.80365 1.21704 1.35584 1.08615 0.93873 0.92384 1.24906 0.94711 0.95386 0.98244 1.69962 1.36937 1.28961 1.15844 0.86682 0.78562 0.82103 0.81567 1.19743 1.21037 1.20812 1.20908 0.89397 0.92397 1.00142 1.19326 0.95268 0.94886 0.91441 1.21120 0.93319 1.05028 0.98578 1.18023 0.90341 0.99331 0.84281 1.84767 1.82395 1.28347 1.35779 1.21285 1.00304 1.11712 0.92745 1.18816 0.91110 0.96047 0.85074 1.86159 1.18518 1.84780 1.32870 1.22983 0.79718 1.00799 1.03114 1.20724 0.89717 1.03201 1.00503 0.90698 0.91540 0.91760 0.91724 0.91422 0.89380 0.88655 0.94739 0.93517 0.92802 0.91794 0.91487 0.85722 0.75814 0.85684 0.92945 0.93098 0.88598 0.83332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.29 37.16 0.38 -1.15 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.22 10.22 -39.24 -0.40 -6.62 16 4 C 0.47 9.07 7.54 36.01 0.27 9.35 16 5 O -0.49 -11.03 14.90 -18.75 -0.28 -11.31 16 6 C 0.07 1.24 5.42 -4.97 -0.03 1.21 16 7 N -0.52 -10.86 4.29 -238.96 -1.03 -11.89 16 8 C 0.18 4.56 4.38 -4.98 -0.02 4.54 16 9 C -0.56 -14.43 6.71 -34.44 -0.23 -14.66 16 10 H 0.06 1.44 5.97 -52.49 -0.31 1.13 16 11 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 12 N -0.88 -25.42 13.29 55.43 0.74 -24.68 16 13 Si 0.88 20.80 29.54 -169.99 -5.02 15.78 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.10 1.80 4.89 -4.97 -0.02 1.78 16 18 C -0.01 -0.16 4.89 -104.67 -0.51 -0.67 16 19 C -0.16 -2.72 9.64 -39.40 -0.38 -3.10 16 20 C 0.12 2.00 6.70 -39.24 -0.26 1.74 16 21 O -0.50 -6.88 13.50 -19.43 -0.26 -7.14 16 22 C -0.24 -3.92 8.97 -39.29 -0.35 -4.27 16 23 C 0.13 2.50 6.68 -39.24 -0.26 2.24 16 24 O -0.31 -5.58 10.49 -19.40 -0.20 -5.78 16 25 C 0.03 0.36 9.81 101.05 0.99 1.36 16 26 C -0.12 -2.48 7.89 -39.41 -0.31 -2.79 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 32 H 0.09 1.68 6.40 -51.93 -0.33 1.35 16 33 H 0.10 1.39 7.81 -51.93 -0.41 0.98 16 34 H 0.03 0.99 6.58 -51.93 -0.34 0.65 16 35 H 0.05 1.29 6.18 -51.93 -0.32 0.97 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.06 1.23 6.31 -51.93 -0.33 0.90 16 38 H 0.07 1.01 7.80 -51.93 -0.41 0.61 16 39 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 40 H 0.39 3.53 9.06 45.56 0.41 3.95 16 41 H 0.13 1.73 6.30 -52.48 -0.33 1.40 16 42 H 0.05 0.60 7.66 -51.92 -0.40 0.20 16 43 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.15 3.39 7.39 -52.48 -0.39 3.00 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -33.01 373.33 -7.08 -40.08 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.64 Total: 7.42 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.61 Total: -1.49 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.29 Total: -36.57 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -1.15 Total: -30.85 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.01 -7.08 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232806620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.235 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds