Wall clock time and date at job start Tue Mar 31 2020 13:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.46923 * 2 1 4 4 C 1.34225 * 116.99568 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00324 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99648 * 180.02562 * 4 3 2 7 7 N 1.46901 * 109.47080 * 174.23391 * 6 4 3 8 8 C 1.46896 * 111.00038 * 287.88396 * 7 6 4 9 9 C 1.50697 * 109.47001 * 295.54691 * 8 7 6 10 10 H 1.07996 * 119.99900 * 5.24444 * 9 8 7 11 11 C 1.37885 * 119.99758 * 185.23968 * 9 8 7 12 12 N 1.31510 * 119.99966 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99699 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47463 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47277 * 120.00316 * 13 11 9 16 16 H 1.48507 * 109.46868 * 239.99836 * 13 11 9 17 17 C 1.46901 * 110.99993 * 163.92821 * 7 6 4 18 18 C 1.50701 * 109.47241 * 189.99827 * 17 7 6 19 19 C 1.38200 * 119.93972 * 90.00057 * 18 17 7 20 20 C 1.38756 * 120.04938 * 179.97438 * 19 18 17 21 21 O 1.35901 * 120.02521 * 180.02562 * 20 19 18 22 22 C 1.38650 * 119.94722 * 0.02562 * 20 19 18 23 23 C 1.38611 * 119.89313 * 0.02562 * 22 20 19 24 24 O 1.35893 * 120.03005 * 180.02562 * 23 22 20 25 25 C 1.42894 * 117.00318 * 0.02562 * 24 23 22 26 26 C 1.38147 * 119.94733 * 270.30512 * 18 17 7 27 27 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46846 * 299.99896 * 1 2 3 29 29 H 1.08999 * 109.47463 * 59.99818 * 1 2 3 30 30 H 1.08991 * 109.46983 * 240.00258 * 2 1 3 31 31 H 1.09000 * 109.46965 * 120.00016 * 2 1 3 32 32 H 1.08996 * 109.47844 * 54.23260 * 6 4 3 33 33 H 1.09006 * 109.46801 * 294.23216 * 6 4 3 34 34 H 1.09003 * 109.47113 * 55.55338 * 8 7 6 35 35 H 1.09001 * 109.47263 * 175.54481 * 8 7 6 36 36 H 0.97000 * 119.99735 * 180.02562 * 12 11 9 37 37 H 1.09003 * 109.47118 * 70.00331 * 17 7 6 38 38 H 1.08995 * 109.47209 * 310.00114 * 17 7 6 39 39 H 1.07994 * 119.98002 * 0.02562 * 19 18 17 40 40 H 0.96701 * 113.99309 * 269.97164 * 21 20 19 41 41 H 1.08003 * 120.05822 * 180.02562 * 22 20 19 42 42 H 1.09007 * 109.47119 * 300.00291 * 25 24 23 43 43 H 1.09004 * 109.47273 * 60.00118 * 25 24 23 44 44 H 1.08997 * 109.47590 * 179.97438 * 25 24 23 45 45 H 1.08007 * 119.97750 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3813 2.8632 0.1384 8 6 5.7615 2.4656 1.5005 9 6 5.3291 3.5316 2.4740 10 1 4.7488 4.3745 2.1291 11 6 5.6745 3.4306 3.8051 12 7 6.3816 2.4043 4.2249 13 14 5.1380 4.7516 5.0119 14 1 4.3593 5.7920 4.2933 15 1 4.2924 4.1420 6.0695 16 1 6.3365 5.3714 5.6324 17 6 6.0108 4.1374 -0.2331 18 6 7.5043 3.9544 -0.3168 19 6 8.0877 3.5824 -1.5131 20 6 9.4627 3.4138 -1.5928 21 8 10.0359 3.0485 -2.7696 22 6 10.2512 3.6182 -0.4708 23 6 9.6636 3.9902 0.7281 24 8 10.4339 4.1919 1.8294 25 6 11.8423 4.0032 1.6793 26 6 8.2872 4.1526 0.8041 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5050 3.5024 0.8343 33 1 3.6693 3.4350 -0.9368 34 1 5.2748 1.5236 1.7532 35 1 6.8430 2.3415 1.5542 36 1 6.6242 2.3331 5.1614 37 1 5.7787 4.8906 0.5199 38 1 5.6297 4.4622 -1.2013 39 1 7.4731 3.4237 -2.3868 40 1 10.1105 2.0920 -2.8904 41 1 11.3217 3.4879 -0.5310 42 1 12.0404 2.9777 1.3671 43 1 12.2230 4.6924 0.9255 44 1 12.3382 4.1959 2.6306 45 1 7.8284 4.4389 1.7390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232806620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:43 Heat of formation + Delta-G solvation = -155.312804 kcal Electronic energy + Delta-G solvation = -27986.853307 eV Core-core repulsion = 23969.598093 eV Total energy + Delta-G solvation = -4017.255213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47286 -41.20078 -39.34980 -38.78486 -37.45717 -36.53847 -34.54657 -32.71410 -31.99954 -30.79997 -29.65953 -28.53967 -27.87402 -26.12289 -24.39308 -23.39631 -23.25443 -21.94578 -21.29108 -19.47860 -18.63696 -18.36003 -17.91156 -17.66091 -17.44524 -17.05471 -16.85065 -16.67780 -16.54844 -16.09562 -15.72496 -15.58996 -14.95722 -14.77363 -14.76214 -14.17796 -14.00378 -13.56527 -13.42534 -13.25914 -13.15950 -12.95389 -12.93480 -12.75755 -12.57113 -12.46635 -12.41430 -12.30431 -12.13628 -11.90269 -11.78324 -11.61198 -11.53557 -11.44952 -11.23068 -10.56464 -9.65176 -9.08094 -9.02759 -8.10866 -6.29377 0.29522 0.47552 1.36569 1.36899 1.39247 1.48995 1.74323 2.38773 2.39039 2.67374 3.16017 3.30289 3.50622 3.88472 3.93761 4.02923 4.12705 4.15580 4.21200 4.33944 4.36069 4.37061 4.38672 4.44440 4.57662 4.60419 4.67512 4.68218 4.87964 4.93777 4.95598 5.06604 5.17230 5.24914 5.34637 5.41746 5.42327 5.55045 5.70261 5.78305 5.82293 5.99807 6.20669 6.37735 6.47025 6.87824 6.90177 6.97217 7.41317 8.92400 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.004590 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.655855 B = 6098.579661 C = 8280.140427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.465 3.535 5 O -0.528 6.528 6 C 0.066 3.934 7 N -0.528 5.528 8 C 0.205 3.795 9 C -0.550 4.550 10 H 0.069 0.931 11 C 0.017 3.983 12 N -0.922 5.922 13 Si 0.947 3.053 14 H -0.257 1.257 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.101 3.899 18 C -0.018 4.018 19 C -0.165 4.165 20 C 0.137 3.863 21 O -0.501 6.501 22 C -0.237 4.237 23 C 0.125 3.875 24 O -0.342 6.342 25 C 0.019 3.981 26 C -0.154 4.154 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.143 0.857 34 H -0.009 1.009 35 H 0.015 0.985 36 H 0.261 0.739 37 H 0.049 0.951 38 H 0.108 0.892 39 H 0.145 0.855 40 H 0.410 0.590 41 H 0.152 0.848 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.115 0.885 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 1.484 -12.024 12.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.309 3.691 5 O -0.416 6.416 6 C -0.063 4.063 7 N -0.252 5.252 8 C 0.079 3.921 9 C -0.589 4.589 10 H 0.087 0.913 11 C -0.183 4.183 12 N -0.562 5.562 13 Si 0.773 3.227 14 H -0.181 1.181 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.026 4.026 18 C -0.019 4.019 19 C -0.184 4.184 20 C 0.092 3.908 21 O -0.314 6.314 22 C -0.257 4.257 23 C 0.079 3.921 24 O -0.256 6.256 25 C -0.075 4.075 26 C -0.174 4.174 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.161 0.839 34 H 0.009 0.991 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.126 0.874 39 H 0.163 0.837 40 H 0.269 0.731 41 H 0.170 0.830 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.133 0.867 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.248 1.368 -12.113 12.192 hybrid contribution 0.016 -0.010 1.929 1.929 sum 0.264 1.358 -10.184 10.277 Atomic orbital electron populations 1.21799 0.89838 1.04359 1.03787 1.23228 0.97394 0.79639 1.01885 1.86476 1.24046 1.33402 1.84279 1.24085 0.80361 0.93320 0.71369 1.90618 1.61092 1.44174 1.45684 1.21593 0.89630 0.89508 1.05567 1.62102 1.05643 1.29637 1.27808 1.19399 0.95671 0.93965 0.83065 1.21955 1.34456 1.08553 0.93948 0.91310 1.25727 0.94907 0.97341 1.00311 1.70109 1.38805 1.31202 1.16055 0.85664 0.78032 0.79755 0.79251 1.18059 1.20966 1.21056 1.21010 0.89406 0.90569 1.01621 1.19402 0.95382 0.95345 0.91748 1.21297 0.94113 1.04660 0.98353 1.18064 0.90088 0.97891 0.84774 1.84711 1.81887 1.30560 1.34225 1.21495 1.01695 1.10706 0.91774 1.18920 0.90764 0.96214 0.86173 1.86114 1.21149 1.84920 1.33398 1.23327 0.77082 1.01975 1.05090 1.20552 0.91114 1.06065 0.99651 0.88118 0.91722 0.90512 0.91139 0.93055 0.90034 0.83906 0.99050 0.96695 0.93031 0.93243 0.87373 0.83748 0.73073 0.83020 0.91969 0.91137 0.86675 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 10.29 71.98 0.74 -1.84 16 2 C 0.05 1.43 6.19 71.98 0.45 1.87 16 3 O -0.36 -12.08 10.22 -51.37 -0.52 -12.60 16 4 C 0.47 18.15 7.54 71.24 0.54 18.69 16 5 O -0.53 -24.56 14.90 21.97 0.33 -24.23 16 6 C 0.07 2.34 5.42 85.56 0.46 2.80 16 7 N -0.53 -22.04 4.29 -909.94 -3.91 -25.94 16 8 C 0.21 10.88 4.38 85.56 0.37 11.25 16 9 C -0.55 -29.32 6.71 25.60 0.17 -29.15 16 10 H 0.07 3.45 5.97 -2.91 -0.02 3.43 16 11 C 0.02 0.95 5.46 84.66 0.46 1.41 16 12 N -0.92 -55.92 13.29 21.45 0.28 -55.63 16 13 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 14 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 17 C 0.10 3.60 4.89 85.56 0.42 4.02 16 18 C -0.02 -0.68 4.89 -19.89 -0.10 -0.77 16 19 C -0.17 -5.31 9.64 22.38 0.22 -5.10 16 20 C 0.14 4.10 6.70 22.49 0.15 4.25 16 21 O -0.50 -11.98 13.50 -92.43 -1.25 -13.23 16 22 C -0.24 -7.39 8.97 22.46 0.20 -7.19 16 23 C 0.12 4.72 6.68 22.49 0.15 4.87 16 24 O -0.34 -12.60 10.49 -92.35 -0.97 -13.57 16 25 C 0.02 0.46 9.81 113.37 1.11 1.58 16 26 C -0.15 -6.55 7.89 22.38 0.18 -6.37 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.83 8.13 -2.39 -0.02 1.82 16 31 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 32 H 0.08 3.06 6.40 -2.39 -0.02 3.04 16 33 H 0.14 3.70 7.81 -2.38 -0.02 3.68 16 34 H -0.01 -0.53 6.58 -2.39 -0.02 -0.54 16 35 H 0.01 0.88 6.18 -2.39 -0.01 0.87 16 36 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.05 1.91 6.31 -2.39 -0.02 1.89 16 38 H 0.11 2.96 7.80 -2.39 -0.02 2.94 16 39 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.41 5.99 9.06 -74.06 -0.67 5.32 16 41 H 0.15 3.79 6.30 -2.91 -0.02 3.78 16 42 H 0.06 1.35 7.66 -2.38 -0.02 1.33 16 43 H 0.07 1.39 7.66 -2.38 -0.02 1.37 16 44 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.11 5.39 7.39 -2.91 -0.02 5.37 16 Total: -1.00 -76.05 373.33 1.86 -74.19 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.35 Total: 24.94 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 5.52 Total: 0.33 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -3.62 Total: -81.57 kcal Atomic # 8 Polarization: -61.22 SS G_CDS: -2.41 Total: -63.63 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -76.05 1.86 -74.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232806620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.125 kcal (2) G-P(sol) polarization free energy of solvation -76.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds