Wall clock time and date at job start Tue Mar 31 2020 14:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35135 * 125.61301 * 2 1 4 4 C 1.40362 * 107.10939 * 180.02562 * 3 2 1 5 5 C 1.36545 * 106.71195 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98797 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99639 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 N 1.46904 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.46900 * 110.99842 * 66.04719 * 12 11 10 14 14 C 1.46899 * 111.00128 * 190.00269 * 12 11 10 15 15 C 1.50703 * 109.47046 * 170.00323 * 14 12 11 16 16 O 1.21292 * 120.00219 * 359.97438 * 15 14 12 17 17 N 1.34779 * 120.00089 * 180.02562 * 15 14 12 18 18 C 1.37089 * 120.00260 * 179.97438 * 17 15 14 19 19 H 1.08008 * 120.00029 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00031 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00404 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99756 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47375 * 60.00318 * 22 20 18 24 24 H 1.48508 * 109.46812 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47140 * 299.99826 * 22 20 18 26 26 O 1.33922 * 125.61589 * 180.33225 * 2 1 3 27 27 H 1.08994 * 109.47475 * 89.99697 * 1 2 3 28 28 H 1.08999 * 109.47428 * 209.99694 * 1 2 3 29 29 H 1.09002 * 109.46896 * 329.99377 * 1 2 3 30 30 H 1.07993 * 126.44513 * 0.03823 * 3 2 1 31 31 H 1.08007 * 126.64372 * 179.97438 * 4 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 34 34 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 35 35 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 36 36 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 37 37 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 38 38 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 39 39 H 1.08999 * 109.47291 * 60.00141 * 13 12 11 40 40 H 1.09003 * 109.47182 * 180.02562 * 13 12 11 41 41 H 1.08997 * 109.47165 * 299.99892 * 13 12 11 42 42 H 1.08998 * 109.47091 * 289.99713 * 14 12 11 43 43 H 1.08996 * 109.47059 * 50.00124 * 14 12 11 44 44 H 0.97003 * 119.99243 * 359.97438 * 17 15 14 45 45 H 0.96997 * 120.00472 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5589 -2.9455 -0.0032 9 6 5.7168 -3.8429 -0.0107 10 6 5.2361 -5.2955 -0.0164 11 6 6.4454 -6.2328 -0.0249 12 7 5.9839 -7.6274 -0.0298 13 6 5.2856 -7.9465 -1.2822 14 6 7.1015 -8.5526 0.2003 15 6 6.5643 -9.9413 0.4330 16 8 5.3681 -10.1406 0.4099 17 7 7.4130 -10.9616 0.6677 18 6 6.9244 -12.2248 0.8799 19 1 5.8592 -12.4024 0.8585 20 6 7.7994 -13.2767 1.1214 21 7 9.0954 -13.0608 1.1469 22 14 7.1335 -14.9981 1.4098 23 1 6.3646 -15.4376 0.2178 24 1 8.2633 -15.9332 1.6430 25 1 6.2434 -14.9918 2.5984 26 8 2.2869 -1.0887 -0.0063 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.9612 2.1260 0.0006 31 1 4.5113 1.2704 -0.0011 32 1 3.6609 -3.3123 -0.0029 33 1 6.3164 -3.6552 -0.9015 34 1 6.3212 -3.6638 0.8785 35 1 4.6366 -5.4833 0.8743 36 1 4.6317 -5.4748 -0.9057 37 1 7.0445 -6.0449 -0.9158 38 1 7.0501 -6.0537 0.8641 39 1 5.9630 -7.7996 -2.1235 40 1 4.9542 -8.9847 -1.2592 41 1 4.4212 -7.2919 -1.3932 42 1 7.7548 -8.5573 -0.6722 43 1 7.6659 -8.2300 1.0752 44 1 8.3697 -10.8021 0.6866 45 1 9.7062 -13.7951 1.3159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233599112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:47 Heat of formation + Delta-G solvation = -56.042813 kcal Electronic energy + Delta-G solvation = -25681.656257 eV Core-core repulsion = 21700.998464 eV Total energy + Delta-G solvation = -3980.657792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.10938 -39.77866 -38.66204 -36.95930 -35.36637 -33.88001 -33.69571 -32.52266 -31.62886 -31.20459 -28.19385 -27.68010 -26.24012 -24.76015 -23.21293 -22.17682 -22.00334 -21.06979 -20.37252 -19.15303 -18.59058 -17.81978 -16.93126 -16.52264 -16.05226 -15.96000 -15.78558 -15.17106 -14.92775 -14.63050 -14.40994 -14.26293 -13.74331 -13.70246 -13.55405 -13.50691 -13.39787 -13.33772 -13.28925 -12.42686 -12.35066 -12.13327 -11.89379 -11.72919 -11.47630 -11.24961 -11.23938 -10.90085 -10.75193 -10.59683 -10.44608 -10.43386 -10.20382 -9.49636 -9.45837 -8.88371 -8.44619 -7.96903 -7.84734 -6.40539 -3.81410 0.65412 1.90623 2.18236 2.83017 2.85002 3.20664 3.26354 3.30618 3.91614 3.98221 4.12884 4.24781 4.44871 4.48880 4.80043 4.80905 4.89997 4.92035 5.03803 5.09508 5.11749 5.22464 5.26235 5.38752 5.41290 5.47520 5.54276 5.58776 5.69948 5.74189 5.90819 5.94545 5.95499 5.99407 6.04234 6.11653 6.29757 6.44165 6.56071 7.10988 7.27042 7.39421 7.55940 7.73367 8.07328 8.63212 9.19171 9.55758 10.07787 10.77126 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031139 B = 0.001620 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.975223 B =17282.007592 C =17926.861356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.021 3.979 3 C -0.225 4.225 4 C -0.115 4.115 5 C -0.083 4.083 6 C 0.603 3.397 7 O -0.521 6.521 8 N -0.717 5.717 9 C 0.119 3.881 10 C -0.128 4.128 11 C 0.058 3.942 12 N -0.519 5.519 13 C 0.020 3.980 14 C 0.046 3.954 15 C 0.444 3.556 16 O -0.578 6.578 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 O -0.162 6.162 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.407 0.593 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.014 0.986 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.747 26.777 -3.635 29.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.032 4.032 3 C -0.244 4.244 4 C -0.136 4.136 5 C -0.134 4.134 6 C 0.389 3.611 7 O -0.399 6.399 8 N -0.368 5.368 9 C -0.004 4.004 10 C -0.166 4.166 11 C -0.071 4.071 12 N -0.243 5.243 13 C -0.128 4.128 14 C -0.086 4.086 15 C 0.229 3.771 16 O -0.462 6.462 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 O -0.059 6.059 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.174 0.826 31 H 0.178 0.822 32 H 0.242 0.758 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.979 26.413 -3.230 29.181 hybrid contribution 0.628 -0.635 -0.492 1.020 sum -11.351 25.778 -3.722 28.411 Atomic orbital electron populations 1.20442 0.84423 1.04669 1.04096 1.22866 0.94355 0.84051 1.01896 1.21612 0.92327 0.99888 1.10585 1.21968 0.98694 0.92941 1.00006 1.22034 0.81871 0.94669 1.14868 1.16526 0.86041 0.81555 0.76996 1.90895 1.22071 1.76170 1.50785 1.45915 1.11128 1.05398 1.74345 1.21442 0.87606 0.88473 1.02907 1.21786 0.99258 0.91682 1.03914 1.21998 0.95610 0.88407 1.01063 1.61542 1.25946 1.00702 1.36091 1.22580 0.97471 1.04660 0.88081 1.21864 0.92324 0.93154 1.01214 1.19741 0.87346 0.85537 0.84448 1.90478 1.15326 1.84180 1.56266 1.41862 1.08700 1.07242 1.62292 1.19648 0.94559 0.83334 1.45386 0.87974 1.25255 0.95024 1.00231 0.97403 1.69600 1.01579 1.33536 1.49617 0.85920 0.78021 0.81193 0.79079 1.19949 1.20995 1.19910 1.84002 1.15964 1.35030 1.70874 0.89459 0.89976 0.88851 0.82587 0.82172 0.75825 0.91049 0.90764 0.90024 0.90993 0.94805 0.90507 0.96776 0.88615 0.92118 0.93443 0.89352 0.77485 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.41 36.01 0.37 0.11 16 2 C 0.02 0.15 7.31 -35.41 -0.26 -0.11 16 3 C -0.23 -1.61 10.77 -39.89 -0.43 -2.04 16 4 C -0.12 -1.06 10.62 -39.39 -0.42 -1.47 16 5 C -0.08 -0.85 7.13 -36.80 -0.26 -1.11 16 6 C 0.60 6.99 7.79 -12.86 -0.10 6.89 16 7 O -0.52 -7.58 16.86 5.20 0.09 -7.49 16 8 N -0.72 -6.88 5.55 -61.62 -0.34 -7.22 16 9 C 0.12 1.15 5.67 -4.04 -0.02 1.13 16 10 C -0.13 -1.29 5.25 -26.73 -0.14 -1.43 16 11 C 0.06 0.70 4.96 -3.82 -0.02 0.69 16 12 N -0.52 -8.47 4.50 -244.37 -1.10 -9.57 16 13 C 0.02 0.32 8.96 60.06 0.54 0.85 16 14 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 15 C 0.44 10.45 7.47 -10.98 -0.08 10.37 16 16 O -0.58 -15.47 13.91 5.55 0.08 -15.40 16 17 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 18 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 22 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 O -0.16 -1.48 10.40 5.02 0.05 -1.43 16 27 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.41 3.20 8.23 -40.82 -0.34 2.87 16 33 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.71 6.55 -51.93 -0.34 0.37 16 37 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 38 H 0.08 0.88 7.93 -51.93 -0.41 0.46 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.10 1.87 5.83 -51.93 -0.30 1.57 16 41 H 0.06 0.83 6.47 -51.93 -0.34 0.49 16 42 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 44 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -33.80 383.07 -7.52 -41.32 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.62 Total: 9.49 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.09 Total: 6.67 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.78 Total: -54.96 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: 0.22 Total: -24.32 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.80 -7.52 -41.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233599112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.724 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds