Wall clock time and date at job start Tue Mar 31 2020 14:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35135 * 125.61301 * 2 1 4 4 C 1.40362 * 107.10939 * 180.02562 * 3 2 1 5 5 C 1.36545 * 106.71195 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98797 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99639 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 N 1.46904 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.46900 * 110.99842 * 66.04719 * 12 11 10 14 14 C 1.46899 * 111.00128 * 190.00269 * 12 11 10 15 15 C 1.50703 * 109.47046 * 170.00323 * 14 12 11 16 16 O 1.21292 * 120.00219 * 359.97438 * 15 14 12 17 17 N 1.34779 * 120.00089 * 180.02562 * 15 14 12 18 18 C 1.37089 * 120.00260 * 179.97438 * 17 15 14 19 19 H 1.08008 * 120.00029 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00031 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00404 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99756 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47375 * 60.00318 * 22 20 18 24 24 H 1.48508 * 109.46812 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47140 * 299.99826 * 22 20 18 26 26 O 1.33922 * 125.61589 * 180.33225 * 2 1 3 27 27 H 1.08994 * 109.47475 * 89.99697 * 1 2 3 28 28 H 1.08999 * 109.47428 * 209.99694 * 1 2 3 29 29 H 1.09002 * 109.46896 * 329.99377 * 1 2 3 30 30 H 1.07993 * 126.44513 * 0.03823 * 3 2 1 31 31 H 1.08007 * 126.64372 * 179.97438 * 4 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 34 34 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 35 35 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 36 36 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 37 37 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 38 38 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 39 39 H 1.08999 * 109.47291 * 60.00141 * 13 12 11 40 40 H 1.09003 * 109.47182 * 180.02562 * 13 12 11 41 41 H 1.08997 * 109.47165 * 299.99892 * 13 12 11 42 42 H 1.08998 * 109.47091 * 289.99713 * 14 12 11 43 43 H 1.08996 * 109.47059 * 50.00124 * 14 12 11 44 44 H 0.97003 * 119.99243 * 359.97438 * 17 15 14 45 45 H 0.96997 * 120.00472 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5589 -2.9455 -0.0032 9 6 5.7168 -3.8429 -0.0107 10 6 5.2361 -5.2955 -0.0164 11 6 6.4454 -6.2328 -0.0249 12 7 5.9839 -7.6274 -0.0298 13 6 5.2856 -7.9465 -1.2822 14 6 7.1015 -8.5526 0.2003 15 6 6.5643 -9.9413 0.4330 16 8 5.3681 -10.1406 0.4099 17 7 7.4130 -10.9616 0.6677 18 6 6.9244 -12.2248 0.8799 19 1 5.8592 -12.4024 0.8585 20 6 7.7994 -13.2767 1.1214 21 7 9.0954 -13.0608 1.1469 22 14 7.1335 -14.9981 1.4098 23 1 6.3646 -15.4376 0.2178 24 1 8.2633 -15.9332 1.6430 25 1 6.2434 -14.9918 2.5984 26 8 2.2869 -1.0887 -0.0063 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.9612 2.1260 0.0006 31 1 4.5113 1.2704 -0.0011 32 1 3.6609 -3.3123 -0.0029 33 1 6.3164 -3.6552 -0.9015 34 1 6.3212 -3.6638 0.8785 35 1 4.6366 -5.4833 0.8743 36 1 4.6317 -5.4748 -0.9057 37 1 7.0445 -6.0449 -0.9158 38 1 7.0501 -6.0537 0.8641 39 1 5.9630 -7.7996 -2.1235 40 1 4.9542 -8.9847 -1.2592 41 1 4.4212 -7.2919 -1.3932 42 1 7.7548 -8.5573 -0.6722 43 1 7.6659 -8.2300 1.0752 44 1 8.3697 -10.8021 0.6866 45 1 9.7062 -13.7951 1.3159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233599112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:47 Heat of formation + Delta-G solvation = -81.541834 kcal Electronic energy + Delta-G solvation = -25682.761977 eV Core-core repulsion = 21700.998464 eV Total energy + Delta-G solvation = -3981.763513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.73119 -40.66775 -40.33885 -38.28918 -36.40745 -35.80479 -34.30770 -33.29294 -33.14335 -32.44653 -29.44901 -28.58364 -27.31801 -26.43333 -24.29625 -22.97256 -22.65073 -22.03809 -21.13203 -20.96118 -19.84482 -19.34850 -17.86204 -17.60376 -17.18062 -16.91163 -16.65654 -16.55026 -16.29437 -16.11226 -15.64609 -15.42556 -15.09444 -14.90437 -14.75761 -14.16658 -14.04894 -13.98504 -13.74150 -13.73585 -13.46914 -13.37564 -13.02097 -12.87457 -12.78458 -12.72057 -12.51588 -12.40181 -12.33860 -12.11702 -11.67864 -11.52342 -11.43812 -11.07493 -10.33217 -10.26276 -9.98625 -9.48807 -9.18974 -8.44914 -5.93611 -0.04672 1.31892 1.40585 1.42229 1.52971 1.53923 2.04344 2.07523 2.08640 2.30102 2.81139 3.21958 3.44030 3.57341 3.86549 3.92150 3.94656 4.03215 4.12673 4.32167 4.40574 4.48902 4.52281 4.55605 4.57529 4.60845 4.62491 4.72342 4.72760 4.74526 4.78719 4.92611 5.05548 5.13194 5.16198 5.21752 5.32206 5.42231 5.43922 5.81938 5.89596 6.08433 6.23601 6.35417 6.62639 6.92123 7.14637 7.58528 8.14525 8.72222 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031139 B = 0.001620 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.975223 B =17282.007592 C =17926.861356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.024 3.976 3 C -0.232 4.232 4 C -0.120 4.120 5 C -0.113 4.113 6 C 0.601 3.399 7 O -0.560 6.560 8 N -0.708 5.708 9 C 0.126 3.874 10 C -0.115 4.115 11 C 0.058 3.942 12 N -0.538 5.538 13 C 0.025 3.975 14 C 0.057 3.943 15 C 0.441 3.559 16 O -0.614 6.614 17 N -0.575 5.575 18 C -0.334 4.334 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.272 1.272 26 O -0.171 6.171 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.183 0.817 31 H 0.162 0.838 32 H 0.415 0.585 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.028 0.972 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 28.003 -3.787 30.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.028 4.028 3 C -0.250 4.250 4 C -0.140 4.140 5 C -0.164 4.164 6 C 0.389 3.611 7 O -0.441 6.441 8 N -0.359 5.359 9 C 0.002 3.998 10 C -0.153 4.153 11 C -0.070 4.070 12 N -0.262 5.262 13 C -0.123 4.123 14 C -0.074 4.074 15 C 0.228 3.772 16 O -0.500 6.500 17 N -0.213 5.213 18 C -0.463 4.463 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.198 1.198 26 O -0.068 6.068 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.201 0.799 31 H 0.180 0.820 32 H 0.252 0.748 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.128 0.872 44 H 0.229 0.771 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.904 27.644 -3.386 30.695 hybrid contribution 0.810 -0.912 -0.460 1.304 sum -12.094 26.732 -3.847 29.592 Atomic orbital electron populations 1.20674 0.81576 1.05978 1.05371 1.23708 0.95877 0.83494 0.99716 1.21952 0.91262 1.01329 1.10482 1.22240 0.99934 0.92780 0.99084 1.21836 0.82171 0.94842 1.17577 1.16703 0.86011 0.82043 0.76387 1.90860 1.23536 1.76865 1.52883 1.45849 1.11634 1.04927 1.73471 1.21346 0.87549 0.88094 1.02802 1.21633 0.98425 0.91292 1.03956 1.22080 0.96638 0.86034 1.02206 1.61498 1.25829 1.02408 1.36505 1.22464 0.98682 1.02572 0.88618 1.21744 0.92909 0.89816 1.02962 1.20796 0.86770 0.87312 0.82292 1.90456 1.17075 1.85262 1.57232 1.41940 1.09055 1.07154 1.63131 1.19629 0.93896 0.85185 1.47599 0.90278 1.26028 0.95242 1.03492 0.96519 1.69665 1.02281 1.34751 1.49494 0.84992 0.77750 0.76765 0.78835 1.19706 1.19550 1.19770 1.83990 1.15610 1.36011 1.71181 0.88023 0.89554 0.86640 0.79930 0.82026 0.74809 0.91033 0.91065 0.90500 0.90426 0.93398 0.89585 0.95337 0.92791 0.89903 0.91530 0.87224 0.77063 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.41 71.24 0.74 0.44 16 2 C 0.02 0.30 7.31 24.97 0.18 0.48 16 3 C -0.23 -2.90 10.77 22.07 0.24 -2.66 16 4 C -0.12 -2.14 10.62 22.39 0.24 -1.90 16 5 C -0.11 -2.31 7.13 24.07 0.17 -2.14 16 6 C 0.60 14.02 7.79 86.44 0.67 14.69 16 7 O -0.56 -16.63 16.86 -4.33 -0.07 -16.70 16 8 N -0.71 -13.15 5.55 -467.09 -2.59 -15.74 16 9 C 0.13 2.27 5.67 86.38 0.49 2.76 16 10 C -0.11 -2.10 5.25 30.59 0.16 -1.94 16 11 C 0.06 1.28 4.96 86.30 0.43 1.71 16 12 N -0.54 -16.80 4.50 -927.05 -4.17 -20.97 16 13 C 0.02 0.76 8.96 127.69 1.14 1.90 16 14 C 0.06 1.96 5.45 85.56 0.47 2.42 16 15 C 0.44 21.01 7.47 87.66 0.66 21.67 16 16 O -0.61 -33.76 13.91 -3.07 -0.04 -33.81 16 17 N -0.58 -29.67 5.29 -306.98 -1.62 -31.29 16 18 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 21 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 22 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 O -0.17 -2.98 10.40 -4.96 -0.05 -3.03 16 27 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 31 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.42 6.19 8.23 -92.71 -0.76 5.43 16 33 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.35 6.55 -2.38 -0.02 1.33 16 37 H 0.05 0.95 8.12 -2.39 -0.02 0.93 16 38 H 0.09 1.75 7.93 -2.38 -0.02 1.73 16 39 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 2.14 5.83 -2.39 -0.01 2.13 16 41 H 0.08 2.13 6.47 -2.39 -0.02 2.12 16 42 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 43 H 0.11 3.32 7.93 -2.39 -0.02 3.30 16 44 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 45 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -74.70 383.07 0.16 -74.54 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -0.47 Total: 32.54 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 6.87 Total: 19.01 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -8.10 Total: -117.64 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.17 Total: -53.54 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.70 0.16 -74.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233599112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.999 kcal (2) G-P(sol) polarization free energy of solvation -74.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds