Wall clock time and date at job start Tue Mar 31 2020 14:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33654 * 125.80078 * 2 1 4 4 C 1.34214 * 110.90894 * 179.97438 * 3 2 1 5 5 C 1.34176 * 109.12111 * 0.23254 * 4 3 2 6 6 C 1.36414 * 125.80190 * 179.97438 * 2 1 3 7 7 C 1.47374 * 127.19087 * 0.04915 * 6 2 1 8 8 O 1.21610 * 120.00377 * 0.02562 * 7 6 2 9 9 N 1.34780 * 120.00070 * 179.97438 * 7 6 2 10 10 C 1.46494 * 120.00207 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.47189 * 180.02562 * 10 9 7 12 12 C 1.52990 * 109.47105 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46992 * 179.97438 * 12 11 10 14 14 C 1.46908 * 110.99892 * 66.04724 * 13 12 11 15 15 C 1.46902 * 111.00095 * 189.99610 * 13 12 11 16 16 C 1.50704 * 109.47487 * 169.99929 * 15 13 12 17 17 O 1.21295 * 119.99311 * 0.02562 * 16 15 13 18 18 N 1.34772 * 120.00144 * 180.02562 * 16 15 13 19 19 C 1.37104 * 119.99590 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99958 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99528 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00082 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99801 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46944 * 60.00376 * 23 21 19 25 25 H 1.48504 * 109.47254 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47475 * 300.00704 * 23 21 19 27 27 H 1.08997 * 109.47055 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46956 * 120.02421 * 1 2 3 29 29 H 1.09001 * 109.46496 * 240.02319 * 1 2 3 30 30 H 1.08002 * 125.43487 * 179.97438 * 4 3 2 31 31 H 1.08005 * 127.01667 * 179.73251 * 5 4 3 32 32 H 0.96998 * 119.99462 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47388 * 300.00159 * 10 9 7 34 34 H 1.08999 * 109.47277 * 60.00692 * 10 9 7 35 35 H 1.09001 * 109.46787 * 300.00161 * 11 10 9 36 36 H 1.08999 * 109.46744 * 60.00000 * 11 10 9 37 37 H 1.09001 * 109.47226 * 299.99643 * 12 11 10 38 38 H 1.08999 * 109.47524 * 60.00227 * 12 11 10 39 39 H 1.09000 * 109.46791 * 60.00158 * 14 13 12 40 40 H 1.09003 * 109.46795 * 179.97438 * 14 13 12 41 41 H 1.08997 * 109.46901 * 299.99800 * 14 13 12 42 42 H 1.09001 * 109.47905 * 290.00335 * 15 13 12 43 43 H 1.09000 * 109.46931 * 50.00221 * 15 13 12 44 44 H 0.96997 * 119.99961 * 0.02562 * 18 16 15 45 45 H 0.97002 * 119.99730 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7391 0.0006 5 6 3.6849 -0.5990 -0.0042 6 6 2.3051 -1.1064 0.0005 7 6 1.8740 -2.5157 0.0001 8 8 0.6891 -2.7892 -0.0012 9 7 2.7931 -3.5015 0.0002 10 6 2.3646 -4.9024 -0.0008 11 6 3.5949 -5.8120 0.0002 12 6 3.1475 -7.2751 -0.0015 13 7 4.3287 -8.1484 -0.0012 14 6 5.0819 -8.0147 1.2530 15 6 3.9493 -9.5472 -0.2408 16 6 5.1891 -10.3705 -0.4778 17 8 6.2813 -9.8438 -0.4494 18 7 5.0842 -11.6919 -0.7212 19 6 6.2122 -12.4409 -0.9363 20 1 7.1847 -11.9720 -0.9110 21 6 6.1041 -13.8034 -1.1868 22 7 4.9207 -14.3740 -1.2171 23 14 7.6409 -14.8238 -1.4806 24 1 8.5215 -14.7472 -0.2872 25 1 7.2573 -16.2378 -1.7234 26 1 8.3656 -14.2976 -2.6650 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5142 -0.8898 29 1 -0.3632 -0.5135 0.8902 30 1 4.4172 1.4286 0.0003 31 1 4.5929 -1.1839 -0.0091 32 1 3.7382 -3.2834 0.0009 33 1 1.7664 -5.1001 0.8887 34 1 1.7676 -5.0992 -0.8912 35 1 4.1934 -5.6145 -0.8891 36 1 4.1916 -5.6152 0.8908 37 1 2.5487 -7.4729 0.8876 38 1 2.5510 -7.4717 -0.8923 39 1 4.4429 -8.2908 2.0917 40 1 5.9509 -8.6723 1.2267 41 1 5.4106 -6.9822 1.3710 42 1 3.4173 -9.9335 0.6287 43 1 3.3029 -9.6034 -1.1166 44 1 4.2107 -12.1129 -0.7443 45 1 4.8452 -15.3251 -1.3923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233732675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:50 Heat of formation + Delta-G solvation = -57.595982 kcal Electronic energy + Delta-G solvation = -25795.542539 eV Core-core repulsion = 21814.817397 eV Total energy + Delta-G solvation = -3980.725143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.96705 -39.65857 -38.65466 -36.92896 -35.23598 -33.85950 -33.46509 -32.33561 -31.47559 -31.18712 -27.95633 -27.47788 -26.34638 -24.83791 -23.64015 -22.57713 -21.30433 -21.01363 -19.92770 -19.13447 -18.24320 -17.81999 -16.76013 -16.42415 -16.15148 -16.02057 -15.80515 -15.16850 -14.93676 -14.70054 -14.56761 -14.23270 -13.76910 -13.59510 -13.55755 -13.40594 -13.35697 -13.25575 -13.19548 -12.32458 -12.20052 -12.11694 -11.84276 -11.69913 -11.46853 -11.24138 -11.23372 -10.89837 -10.72050 -10.43573 -10.25750 -10.23351 -10.20233 -9.45967 -9.33995 -8.94617 -8.44474 -7.96919 -7.84518 -6.40691 -3.81570 1.00108 1.64149 2.38866 2.95623 3.08365 3.20510 3.26227 3.30497 3.91664 3.99885 4.09778 4.25153 4.42432 4.45478 4.82882 4.83067 4.95282 5.05755 5.09745 5.11823 5.17524 5.25503 5.27000 5.38739 5.42322 5.52744 5.60207 5.71286 5.73541 5.74794 5.86304 5.93605 5.98764 6.01234 6.09600 6.20968 6.29788 6.55995 6.59962 7.25115 7.28046 7.40023 7.55841 7.97465 8.07290 8.63067 9.19010 9.55674 10.07660 10.76969 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.037675 B = 0.001609 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.018796 B =17401.017210 C =17881.749752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.078 3.922 3 O -0.176 6.176 4 C -0.039 4.039 5 C -0.188 4.188 6 C -0.249 4.249 7 C 0.589 3.411 8 O -0.543 6.543 9 N -0.722 5.722 10 C 0.122 3.878 11 C -0.128 4.128 12 C 0.058 3.942 13 N -0.519 5.519 14 C 0.020 3.980 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.209 0.791 31 H 0.158 0.842 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.013 0.987 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.720 27.403 3.760 28.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.025 3.975 3 O -0.072 6.072 4 C -0.104 4.104 5 C -0.207 4.207 6 C -0.253 4.253 7 C 0.377 3.623 8 O -0.422 6.422 9 N -0.373 5.373 10 C -0.002 4.002 11 C -0.166 4.166 12 C -0.071 4.071 13 N -0.243 5.243 14 C -0.128 4.128 15 C -0.086 4.086 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.225 0.775 31 H 0.175 0.825 32 H 0.236 0.764 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.032 0.968 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.671 27.752 3.357 28.988 hybrid contribution 0.451 -1.202 0.475 1.369 sum -7.220 26.551 3.832 27.780 Atomic orbital electron populations 1.20488 0.83627 1.03595 1.05339 1.22850 0.94194 0.83125 0.97313 1.83785 1.17226 1.34942 1.71293 1.23880 0.83503 0.96447 1.06596 1.22897 0.96658 0.94619 1.06568 1.21167 0.93397 0.93878 1.16873 1.17177 0.85447 0.83724 0.75975 1.90783 1.16580 1.84192 1.50644 1.45779 1.09801 1.06223 1.75465 1.21352 0.97204 0.79075 1.02581 1.21778 0.96975 0.94093 1.03731 1.21999 0.92151 0.91912 1.01016 1.61550 1.21104 1.05777 1.35844 1.22578 0.99564 1.02546 0.88079 1.21867 0.97130 0.88389 1.01190 1.19741 0.90016 0.82868 0.84432 1.90478 1.28225 1.71230 1.56330 1.41864 1.09840 1.06230 1.62171 1.19649 0.88089 0.89920 1.45257 0.87974 1.25259 0.98151 0.97119 0.97409 1.69607 1.22722 1.12461 1.49542 0.85917 0.81003 0.78201 0.79076 1.19949 1.20996 1.19911 0.90519 0.88504 0.88534 0.77481 0.82454 0.76431 0.91401 0.91124 0.90158 0.91104 0.94860 0.90560 0.96801 0.88631 0.92129 0.93451 0.89365 0.77482 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 9.14 36.01 0.33 -0.19 16 2 C 0.08 0.70 7.37 -34.96 -0.26 0.44 16 3 O -0.18 -1.44 10.52 7.65 0.08 -1.36 16 4 C -0.04 -0.24 12.03 29.30 0.35 0.12 16 5 C -0.19 -1.33 10.60 -37.46 -0.40 -1.72 16 6 C -0.25 -2.40 6.31 -103.28 -0.65 -3.05 16 7 C 0.59 6.65 7.81 -12.54 -0.10 6.55 16 8 O -0.54 -7.61 15.66 5.27 0.08 -7.52 16 9 N -0.72 -6.73 5.55 -61.40 -0.34 -7.07 16 10 C 0.12 1.19 5.67 -4.04 -0.02 1.16 16 11 C -0.13 -1.28 5.25 -26.73 -0.14 -1.42 16 12 C 0.06 0.71 4.96 -3.83 -0.02 0.69 16 13 N -0.52 -8.47 4.50 -244.37 -1.10 -9.57 16 14 C 0.02 0.32 8.96 60.07 0.54 0.86 16 15 C 0.05 0.81 5.45 -4.97 -0.03 0.79 16 16 C 0.44 10.45 7.47 -10.99 -0.08 10.37 16 17 O -0.58 -15.46 13.91 5.54 0.08 -15.38 16 18 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 23 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.21 0.45 8.06 -52.49 -0.42 0.03 16 31 H 0.16 0.74 7.74 -52.48 -0.41 0.33 16 32 H 0.40 2.86 7.64 -40.82 -0.31 2.55 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 37 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.10 1.87 5.82 -51.93 -0.30 1.57 16 41 H 0.06 0.82 6.47 -51.93 -0.34 0.48 16 42 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 44 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -34.12 380.21 -7.12 -41.24 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.57 Total: 9.49 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -0.72 Total: 6.60 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.77 Total: -54.80 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.24 Total: -24.26 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.12 -7.12 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233732675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.359 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds