Wall clock time and date at job start Tue Mar 31 2020 14:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33654 * 125.80078 * 2 1 4 4 C 1.34214 * 110.90894 * 179.97438 * 3 2 1 5 5 C 1.34176 * 109.12111 * 0.23254 * 4 3 2 6 6 C 1.36414 * 125.80190 * 179.97438 * 2 1 3 7 7 C 1.47374 * 127.19087 * 0.04915 * 6 2 1 8 8 O 1.21610 * 120.00377 * 0.02562 * 7 6 2 9 9 N 1.34780 * 120.00070 * 179.97438 * 7 6 2 10 10 C 1.46494 * 120.00207 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.47189 * 180.02562 * 10 9 7 12 12 C 1.52990 * 109.47105 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46992 * 179.97438 * 12 11 10 14 14 C 1.46908 * 110.99892 * 66.04724 * 13 12 11 15 15 C 1.46902 * 111.00095 * 189.99610 * 13 12 11 16 16 C 1.50704 * 109.47487 * 169.99929 * 15 13 12 17 17 O 1.21295 * 119.99311 * 0.02562 * 16 15 13 18 18 N 1.34772 * 120.00144 * 180.02562 * 16 15 13 19 19 C 1.37104 * 119.99590 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99958 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99528 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00082 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99801 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46944 * 60.00376 * 23 21 19 25 25 H 1.48504 * 109.47254 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47475 * 300.00704 * 23 21 19 27 27 H 1.08997 * 109.47055 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46956 * 120.02421 * 1 2 3 29 29 H 1.09001 * 109.46496 * 240.02319 * 1 2 3 30 30 H 1.08002 * 125.43487 * 179.97438 * 4 3 2 31 31 H 1.08005 * 127.01667 * 179.73251 * 5 4 3 32 32 H 0.96998 * 119.99462 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47388 * 300.00159 * 10 9 7 34 34 H 1.08999 * 109.47277 * 60.00692 * 10 9 7 35 35 H 1.09001 * 109.46787 * 300.00161 * 11 10 9 36 36 H 1.08999 * 109.46744 * 60.00000 * 11 10 9 37 37 H 1.09001 * 109.47226 * 299.99643 * 12 11 10 38 38 H 1.08999 * 109.47524 * 60.00227 * 12 11 10 39 39 H 1.09000 * 109.46791 * 60.00158 * 14 13 12 40 40 H 1.09003 * 109.46795 * 179.97438 * 14 13 12 41 41 H 1.08997 * 109.46901 * 299.99800 * 14 13 12 42 42 H 1.09001 * 109.47905 * 290.00335 * 15 13 12 43 43 H 1.09000 * 109.46931 * 50.00221 * 15 13 12 44 44 H 0.96997 * 119.99961 * 0.02562 * 18 16 15 45 45 H 0.97002 * 119.99730 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7391 0.0006 5 6 3.6849 -0.5990 -0.0042 6 6 2.3051 -1.1064 0.0005 7 6 1.8740 -2.5157 0.0001 8 8 0.6891 -2.7892 -0.0012 9 7 2.7931 -3.5015 0.0002 10 6 2.3646 -4.9024 -0.0008 11 6 3.5949 -5.8120 0.0002 12 6 3.1475 -7.2751 -0.0015 13 7 4.3287 -8.1484 -0.0012 14 6 5.0819 -8.0147 1.2530 15 6 3.9493 -9.5472 -0.2408 16 6 5.1891 -10.3705 -0.4778 17 8 6.2813 -9.8438 -0.4494 18 7 5.0842 -11.6919 -0.7212 19 6 6.2122 -12.4409 -0.9363 20 1 7.1847 -11.9720 -0.9110 21 6 6.1041 -13.8034 -1.1868 22 7 4.9207 -14.3740 -1.2171 23 14 7.6409 -14.8238 -1.4806 24 1 8.5215 -14.7472 -0.2872 25 1 7.2573 -16.2378 -1.7234 26 1 8.3656 -14.2976 -2.6650 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5142 -0.8898 29 1 -0.3632 -0.5135 0.8902 30 1 4.4172 1.4286 0.0003 31 1 4.5929 -1.1839 -0.0091 32 1 3.7382 -3.2834 0.0009 33 1 1.7664 -5.1001 0.8887 34 1 1.7676 -5.0992 -0.8912 35 1 4.1934 -5.6145 -0.8891 36 1 4.1916 -5.6152 0.8908 37 1 2.5487 -7.4729 0.8876 38 1 2.5510 -7.4717 -0.8923 39 1 4.4429 -8.2908 2.0917 40 1 5.9509 -8.6723 1.2267 41 1 5.4106 -6.9822 1.3710 42 1 3.4173 -9.9335 0.6287 43 1 3.3029 -9.6034 -1.1166 44 1 4.2107 -12.1129 -0.7443 45 1 4.8452 -15.3251 -1.3923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233732675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:50 Heat of formation + Delta-G solvation = -83.389207 kcal Electronic energy + Delta-G solvation = -25796.661018 eV Core-core repulsion = 21814.817397 eV Total energy + Delta-G solvation = -3981.843621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.53591 -40.54579 -40.30825 -38.26328 -36.28492 -35.77409 -34.12243 -33.27455 -32.92394 -32.31882 -29.39029 -28.23726 -27.35819 -26.51995 -24.64993 -23.47142 -22.08455 -21.88348 -20.95970 -20.65627 -19.83573 -18.85287 -17.83984 -17.37378 -17.03919 -16.90720 -16.85951 -16.54683 -16.33901 -16.11375 -15.63546 -15.48118 -15.15697 -14.93577 -14.72499 -14.31716 -14.08278 -13.86075 -13.76988 -13.71242 -13.46401 -13.34139 -13.01290 -12.84360 -12.72305 -12.65516 -12.50290 -12.39663 -12.31591 -12.11563 -11.64542 -11.43670 -11.14018 -10.85209 -10.26343 -10.13163 -9.98473 -9.52560 -9.18689 -8.44831 -5.93526 0.31852 1.12838 1.40711 1.42382 1.53304 1.83460 2.07628 2.20161 2.30459 2.31159 2.83146 3.22036 3.44522 3.60980 3.77389 3.89785 3.97112 4.06832 4.14379 4.32164 4.36792 4.41452 4.50348 4.56270 4.61731 4.61848 4.61935 4.65455 4.74039 4.76831 4.81570 4.87654 5.09827 5.19288 5.20264 5.29052 5.36730 5.42355 5.43790 5.89935 6.03381 6.08794 6.24133 6.52571 6.62685 7.14683 7.18141 7.58648 8.14540 8.72304 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.037675 B = 0.001609 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.018796 B =17401.017210 C =17881.749752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.066 3.934 3 O -0.183 6.183 4 C -0.032 4.032 5 C -0.198 4.198 6 C -0.273 4.273 7 C 0.584 3.416 8 O -0.579 6.579 9 N -0.712 5.712 10 C 0.129 3.871 11 C -0.114 4.114 12 C 0.058 3.942 13 N -0.537 5.537 14 C 0.025 3.975 15 C 0.056 3.944 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.333 4.333 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.272 1.272 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.248 0.752 31 H 0.179 0.821 32 H 0.413 0.587 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.027 0.973 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 28.576 3.915 29.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.012 3.988 3 O -0.079 6.079 4 C -0.097 4.097 5 C -0.217 4.217 6 C -0.278 4.278 7 C 0.373 3.627 8 O -0.461 6.461 9 N -0.364 5.364 10 C 0.005 3.995 11 C -0.152 4.152 12 C -0.070 4.070 13 N -0.262 5.262 14 C -0.123 4.123 15 C -0.075 4.075 16 C 0.229 3.771 17 O -0.500 6.500 18 N -0.213 5.213 19 C -0.463 4.463 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.198 1.198 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.264 0.736 31 H 0.197 0.803 32 H 0.249 0.751 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.127 0.873 44 H 0.229 0.771 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.461 28.937 3.517 30.090 hybrid contribution 0.399 -1.473 0.441 1.588 sum -7.062 27.465 3.958 28.633 Atomic orbital electron populations 1.20491 0.82951 1.04780 1.04667 1.23146 0.94974 0.83336 0.97295 1.83801 1.18158 1.34733 1.71211 1.24695 0.83419 0.96988 1.04555 1.23186 0.96209 0.95290 1.07019 1.21275 0.95165 0.93161 1.18184 1.17481 0.85150 0.84666 0.75416 1.90755 1.18004 1.84817 1.52475 1.45694 1.10270 1.05784 1.74627 1.21220 0.96887 0.79228 1.02173 1.21620 0.96891 0.92755 1.03897 1.22081 0.90819 0.92040 1.02041 1.61511 1.23167 1.05205 1.36276 1.22467 0.98306 1.02986 0.88558 1.21748 0.94172 0.88658 1.02901 1.20786 0.91517 0.82546 0.82287 1.90456 1.30397 1.71857 1.57279 1.41943 1.09345 1.06999 1.63014 1.19630 0.88189 0.91001 1.47447 0.90253 1.26036 1.01197 0.97561 0.96538 1.69672 1.24148 1.12954 1.49433 0.84988 0.77466 0.77029 0.78837 1.19697 1.19572 1.19757 0.88384 0.89191 0.89136 0.73650 0.80328 0.75069 0.91691 0.91739 0.90500 0.90394 0.93583 0.89764 0.95427 0.92790 0.89795 0.91582 0.87282 0.77072 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 9.14 71.24 0.65 -0.36 16 2 C 0.07 1.14 7.37 25.26 0.19 1.33 16 3 O -0.18 -2.71 10.52 4.46 0.05 -2.66 16 4 C -0.03 -0.31 12.03 66.89 0.80 0.50 16 5 C -0.20 -2.41 10.60 23.65 0.25 -2.16 16 6 C -0.27 -5.09 6.31 -19.00 -0.12 -5.21 16 7 C 0.58 12.98 7.81 86.65 0.68 13.65 16 8 O -0.58 -16.42 15.66 -4.06 -0.06 -16.49 16 9 N -0.71 -12.42 5.55 -466.42 -2.59 -15.01 16 10 C 0.13 2.33 5.67 86.38 0.49 2.82 16 11 C -0.11 -2.04 5.25 30.59 0.16 -1.88 16 12 C 0.06 1.28 4.96 86.30 0.43 1.71 16 13 N -0.54 -16.68 4.50 -927.03 -4.17 -20.85 16 14 C 0.02 0.76 8.96 127.69 1.14 1.90 16 15 C 0.06 1.94 5.45 85.56 0.47 2.41 16 16 C 0.44 20.97 7.47 87.66 0.66 21.63 16 17 O -0.61 -33.60 13.91 -3.08 -0.04 -33.65 16 18 N -0.58 -29.62 5.29 -306.98 -1.62 -31.25 16 19 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 22 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 23 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 29 H 0.09 1.35 8.08 -2.39 -0.02 1.33 16 30 H 0.25 0.14 8.06 -2.91 -0.02 0.11 16 31 H 0.18 1.21 7.74 -2.91 -0.02 1.19 16 32 H 0.41 5.16 7.64 -92.71 -0.71 4.45 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.31 6.55 -2.39 -0.02 1.29 16 37 H 0.05 0.93 8.12 -2.39 -0.02 0.91 16 38 H 0.08 1.74 7.93 -2.39 -0.02 1.72 16 39 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 2.13 5.82 -2.39 -0.01 2.11 16 41 H 0.08 2.12 6.47 -2.39 -0.02 2.10 16 42 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 43 H 0.11 3.31 7.93 -2.39 -0.02 3.29 16 44 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 45 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -75.19 380.21 0.53 -74.66 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -0.41 Total: 31.89 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 7.07 Total: 17.93 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -8.10 Total: -116.70 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -0.06 Total: -52.80 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -75.19 0.53 -74.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233732675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.726 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds