Wall clock time and date at job start Tue Mar 31 2020 14:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40360 * 126.64652 * 2 1 4 4 C 1.35129 * 107.11439 * 179.83816 * 3 2 1 5 5 O 1.33926 * 108.76801 * 0.43194 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72508 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47014 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47033 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46997 * 180.02562 * 12 11 10 14 14 C 1.46895 * 111.00119 * 66.04535 * 13 12 11 15 15 C 1.46906 * 110.99727 * 189.99881 * 13 12 11 16 16 C 1.50706 * 109.46876 * 170.00194 * 15 13 12 17 17 O 1.21293 * 119.99958 * 359.97438 * 16 15 13 18 18 N 1.34776 * 119.99650 * 180.02562 * 16 15 13 19 19 C 1.37104 * 119.99642 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99834 * 359.97438 * 19 18 16 21 21 C 1.38943 * 119.99925 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00258 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46734 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46923 * 119.99291 * 23 21 19 26 26 H 1.48493 * 109.47136 * 239.99767 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68325 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68425 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68406 * 1 2 3 30 30 H 1.08003 * 126.44292 * 0.02562 * 3 2 1 31 31 H 1.08007 * 125.61463 * 180.16644 * 4 3 2 32 32 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.47025 * 300.00112 * 10 9 7 34 34 H 1.08997 * 109.47170 * 60.00200 * 10 9 7 35 35 H 1.08998 * 109.47120 * 300.00410 * 11 10 9 36 36 H 1.08997 * 109.47050 * 60.00051 * 11 10 9 37 37 H 1.09007 * 109.47308 * 299.99399 * 12 11 10 38 38 H 1.08997 * 109.47377 * 59.99986 * 12 11 10 39 39 H 1.09001 * 109.47667 * 59.99857 * 14 13 12 40 40 H 1.09005 * 109.47487 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.47552 * 299.99740 * 14 13 12 42 42 H 1.09002 * 109.46863 * 289.99670 * 15 13 12 43 43 H 1.08993 * 109.47123 * 49.99835 * 15 13 12 44 44 H 0.96993 * 120.00663 * 359.97438 * 18 16 15 45 45 H 0.96999 * 120.00679 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0037 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0142 8 8 0.6968 -2.7614 -0.0161 9 7 2.7971 -3.4868 -0.0197 10 6 2.3598 -4.8850 -0.0273 11 6 3.5843 -5.8023 -0.0317 12 6 3.1276 -7.2625 -0.0403 13 7 4.3033 -8.1432 -0.0439 14 6 5.0571 -8.0202 1.2108 15 6 3.9151 -9.5385 -0.2903 16 6 5.1498 -10.3684 -0.5308 17 8 6.2453 -9.8487 -0.5006 18 7 5.0365 -11.6880 -0.7806 19 6 6.1598 -12.4429 -1.0000 20 1 7.1353 -11.9801 -0.9730 21 6 6.0431 -13.8032 -1.2580 22 7 4.8562 -14.3663 -1.2913 23 14 7.5735 -14.8320 -1.5562 24 1 8.7770 -13.9669 -1.4647 25 1 7.6557 -15.9051 -0.5330 26 1 7.5044 -15.4417 -2.9085 27 1 -0.3633 -0.0057 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5089 30 1 2.0306 2.1595 0.0004 31 1 4.5046 1.2916 0.0072 32 1 3.7436 -3.2746 -0.0186 33 1 1.7610 -5.0832 0.8616 34 1 1.7609 -5.0735 -0.9183 35 1 4.1835 -5.6041 -0.9204 36 1 4.1828 -5.6137 0.8595 37 1 2.5282 -7.4610 0.8482 38 1 2.5293 -7.4508 -0.9318 39 1 4.4163 -8.2962 2.0483 40 1 5.9224 -8.6824 1.1814 41 1 5.3924 -6.9904 1.3339 42 1 3.3806 -9.9254 0.5773 43 1 3.2686 -9.5864 -1.1664 44 1 4.1605 -12.1036 -0.8052 45 1 4.7747 -15.3160 -1.4711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233947492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:03 Heat of formation + Delta-G solvation = -55.888988 kcal Electronic energy + Delta-G solvation = -25844.898620 eV Core-core repulsion = 21864.247498 eV Total energy + Delta-G solvation = -3980.651122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.10105 -39.76685 -38.66444 -36.97143 -35.47711 -34.37532 -33.84843 -31.93209 -31.22552 -30.64825 -28.23435 -27.75388 -26.37486 -24.81445 -23.47358 -22.50230 -21.53191 -21.04907 -20.09817 -19.14496 -18.44707 -17.82248 -16.83733 -16.50043 -16.41090 -16.01102 -15.81475 -15.16272 -14.92938 -14.63343 -14.46212 -14.22870 -13.88085 -13.65002 -13.46841 -13.42175 -13.34768 -13.30596 -12.92380 -12.35141 -12.17780 -12.13312 -11.88868 -11.72386 -11.47667 -11.26075 -11.24149 -10.92780 -10.73769 -10.44606 -10.33736 -10.21709 -10.12165 -9.50362 -9.47866 -8.96176 -8.44731 -7.97037 -7.84797 -6.40949 -3.81750 0.67244 1.92689 2.30214 2.83347 2.87877 3.16778 3.27296 3.34419 3.91415 3.98448 4.24481 4.26504 4.36340 4.50722 4.80460 4.90923 5.03790 5.06772 5.09408 5.12115 5.25953 5.34127 5.37408 5.39425 5.48329 5.58258 5.63738 5.69196 5.73933 5.75794 5.91030 5.94751 5.99063 6.01254 6.07345 6.13989 6.29603 6.43706 6.56123 7.12779 7.27034 7.39452 7.56158 7.75525 8.07640 8.62877 9.19151 9.55664 10.07491 10.76882 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.037842 B = 0.001622 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.746062 B =17261.350647 C =17739.755418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.086 4.086 3 C -0.226 4.226 4 C -0.002 4.002 5 O -0.164 6.164 6 C -0.088 4.088 7 C 0.603 3.397 8 O -0.519 6.519 9 N -0.718 5.718 10 C 0.120 3.880 11 C -0.128 4.128 12 C 0.058 3.942 13 N -0.519 5.519 14 C 0.020 3.980 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.156 0.844 31 H 0.211 0.789 32 H 0.407 0.593 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.014 0.986 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.731 27.909 3.901 29.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.246 4.246 4 C -0.072 4.072 5 O -0.059 6.059 6 C -0.140 4.140 7 C 0.389 3.611 8 O -0.397 6.397 9 N -0.369 5.369 10 C -0.004 4.004 11 C -0.167 4.167 12 C -0.071 4.071 13 N -0.243 5.243 14 C -0.128 4.128 15 C -0.086 4.086 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.174 0.826 31 H 0.227 0.773 32 H 0.241 0.759 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.335 27.749 3.498 28.915 hybrid contribution 0.089 -0.721 0.484 0.873 sum -7.246 27.028 3.982 28.264 Atomic orbital electron populations 1.20444 0.88144 1.03677 1.02983 1.20674 0.97742 0.91001 0.99489 1.21770 0.92456 1.00226 1.10105 1.24393 1.00033 0.80561 1.02225 1.84063 1.28298 1.22772 1.70762 1.21870 0.81560 0.94828 1.15711 1.16505 0.85748 0.81832 0.77015 1.90857 1.15697 1.82373 1.50782 1.45918 1.10065 1.06430 1.74450 1.21426 0.97384 0.78693 1.02853 1.21784 0.96924 0.94041 1.03904 1.21997 0.92224 0.91791 1.01051 1.61540 1.21232 1.05774 1.35741 1.22579 0.99525 1.02628 0.88058 1.21868 0.97109 0.88409 1.01183 1.19744 0.90012 0.82873 0.84399 1.90480 1.27861 1.71538 1.56324 1.41879 1.09864 1.06346 1.62088 1.19751 0.88203 0.89962 1.44863 0.87859 1.25258 0.98108 0.97169 0.97446 1.69618 1.22434 1.12626 1.49660 0.85803 0.81309 0.79428 0.77816 1.19236 1.20801 1.20766 0.90736 0.89410 0.91428 0.82621 0.77252 0.75852 0.91084 0.90810 0.90043 0.90993 0.94826 0.90514 0.96778 0.88620 0.92110 0.93439 0.89349 0.77491 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 9.82 36.01 0.35 -0.43 16 2 C -0.09 -0.79 6.20 -104.43 -0.65 -1.44 16 3 C -0.23 -1.53 10.83 -39.89 -0.43 -1.96 16 4 C 0.00 -0.01 12.08 29.63 0.36 0.34 16 5 O -0.16 -1.40 10.40 5.02 0.05 -1.35 16 6 C -0.09 -0.89 7.13 -36.80 -0.26 -1.15 16 7 C 0.60 6.80 7.79 -12.86 -0.10 6.70 16 8 O -0.52 -7.12 14.74 5.20 0.08 -7.05 16 9 N -0.72 -6.75 5.55 -61.62 -0.34 -7.09 16 10 C 0.12 1.13 5.67 -4.04 -0.02 1.11 16 11 C -0.13 -1.28 5.25 -26.73 -0.14 -1.42 16 12 C 0.06 0.70 4.96 -3.83 -0.02 0.68 16 13 N -0.52 -8.44 4.50 -244.36 -1.10 -9.54 16 14 C 0.02 0.32 8.96 60.06 0.54 0.85 16 15 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 16 C 0.44 10.44 7.47 -10.98 -0.08 10.36 16 17 O -0.58 -15.45 13.91 5.55 0.08 -15.37 16 18 N -0.57 -14.30 5.29 -10.96 -0.06 -14.36 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 23 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.86 6.44 -51.93 -0.33 0.53 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.16 0.67 8.06 -52.48 -0.42 0.24 16 31 H 0.21 0.36 8.06 -52.48 -0.42 -0.06 16 32 H 0.41 3.15 8.23 -40.82 -0.34 2.82 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.70 6.55 -51.93 -0.34 0.36 16 37 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.10 1.87 5.83 -51.93 -0.30 1.57 16 41 H 0.06 0.83 6.47 -51.93 -0.34 0.49 16 42 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 44 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -33.59 379.05 -7.14 -40.72 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.53 Total: 9.66 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.72 Total: 6.48 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.78 Total: -54.81 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.21 Total: -23.77 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.59 -7.14 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233947492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.166 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds