Wall clock time and date at job start Tue Mar 31 2020 14:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40360 * 126.64652 * 2 1 4 4 C 1.35129 * 107.11439 * 179.83816 * 3 2 1 5 5 O 1.33926 * 108.76801 * 0.43194 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72508 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47014 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47033 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46997 * 180.02562 * 12 11 10 14 14 C 1.46895 * 111.00119 * 66.04535 * 13 12 11 15 15 C 1.46906 * 110.99727 * 189.99881 * 13 12 11 16 16 C 1.50706 * 109.46876 * 170.00194 * 15 13 12 17 17 O 1.21293 * 119.99958 * 359.97438 * 16 15 13 18 18 N 1.34776 * 119.99650 * 180.02562 * 16 15 13 19 19 C 1.37104 * 119.99642 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99834 * 359.97438 * 19 18 16 21 21 C 1.38943 * 119.99925 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00258 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46734 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46923 * 119.99291 * 23 21 19 26 26 H 1.48493 * 109.47136 * 239.99767 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68325 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68425 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68406 * 1 2 3 30 30 H 1.08003 * 126.44292 * 0.02562 * 3 2 1 31 31 H 1.08007 * 125.61463 * 180.16644 * 4 3 2 32 32 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.47025 * 300.00112 * 10 9 7 34 34 H 1.08997 * 109.47170 * 60.00200 * 10 9 7 35 35 H 1.08998 * 109.47120 * 300.00410 * 11 10 9 36 36 H 1.08997 * 109.47050 * 60.00051 * 11 10 9 37 37 H 1.09007 * 109.47308 * 299.99399 * 12 11 10 38 38 H 1.08997 * 109.47377 * 59.99986 * 12 11 10 39 39 H 1.09001 * 109.47667 * 59.99857 * 14 13 12 40 40 H 1.09005 * 109.47487 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.47552 * 299.99740 * 14 13 12 42 42 H 1.09002 * 109.46863 * 289.99670 * 15 13 12 43 43 H 1.08993 * 109.47123 * 49.99835 * 15 13 12 44 44 H 0.96993 * 120.00663 * 359.97438 * 18 16 15 45 45 H 0.96999 * 120.00679 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0037 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0142 8 8 0.6968 -2.7614 -0.0161 9 7 2.7971 -3.4868 -0.0197 10 6 2.3598 -4.8850 -0.0273 11 6 3.5843 -5.8023 -0.0317 12 6 3.1276 -7.2625 -0.0403 13 7 4.3033 -8.1432 -0.0439 14 6 5.0571 -8.0202 1.2108 15 6 3.9151 -9.5385 -0.2903 16 6 5.1498 -10.3684 -0.5308 17 8 6.2453 -9.8487 -0.5006 18 7 5.0365 -11.6880 -0.7806 19 6 6.1598 -12.4429 -1.0000 20 1 7.1353 -11.9801 -0.9730 21 6 6.0431 -13.8032 -1.2580 22 7 4.8562 -14.3663 -1.2913 23 14 7.5735 -14.8320 -1.5562 24 1 8.7770 -13.9669 -1.4647 25 1 7.6557 -15.9051 -0.5330 26 1 7.5044 -15.4417 -2.9085 27 1 -0.3633 -0.0057 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5089 30 1 2.0306 2.1595 0.0004 31 1 4.5046 1.2916 0.0072 32 1 3.7436 -3.2746 -0.0186 33 1 1.7610 -5.0832 0.8616 34 1 1.7609 -5.0735 -0.9183 35 1 4.1835 -5.6041 -0.9204 36 1 4.1828 -5.6137 0.8595 37 1 2.5282 -7.4610 0.8482 38 1 2.5293 -7.4508 -0.9318 39 1 4.4163 -8.2962 2.0483 40 1 5.9224 -8.6824 1.1814 41 1 5.3924 -6.9904 1.3339 42 1 3.3806 -9.9254 0.5773 43 1 3.2686 -9.5864 -1.1664 44 1 4.1605 -12.1036 -0.8052 45 1 4.7747 -15.3160 -1.4711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233947492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:02 Heat of formation + Delta-G solvation = -81.423617 kcal Electronic energy + Delta-G solvation = -25846.005885 eV Core-core repulsion = 21864.247498 eV Total energy + Delta-G solvation = -3981.758387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.67790 -40.61832 -40.33213 -38.28722 -36.45213 -35.82151 -35.00157 -33.28426 -32.82742 -31.27677 -29.42517 -28.75518 -27.45603 -26.51829 -24.49557 -23.32034 -22.19374 -22.01206 -20.96492 -20.83315 -19.84232 -19.12636 -17.85562 -17.49688 -17.12629 -16.99211 -16.86065 -16.56467 -16.36719 -16.10774 -15.60956 -15.42136 -15.09118 -14.97346 -14.72131 -14.41043 -14.05302 -13.89608 -13.74312 -13.53076 -13.47867 -13.35972 -13.02620 -12.85095 -12.78159 -12.72003 -12.50491 -12.37723 -12.33225 -12.10640 -11.65990 -11.45240 -11.28791 -10.68172 -10.30497 -10.26086 -9.98510 -9.57134 -9.18662 -8.45412 -5.93975 0.01375 1.37248 1.40452 1.42316 1.56458 1.67815 2.05900 2.07290 2.17862 2.30349 2.81881 3.21591 3.44088 3.71673 3.80925 3.93094 3.95727 4.04655 4.13513 4.32672 4.40922 4.49607 4.53012 4.55916 4.61057 4.62043 4.63161 4.74257 4.75367 4.77165 4.81109 5.05828 5.10835 5.16275 5.19940 5.26271 5.32896 5.42625 5.46773 5.85528 5.89875 6.08712 6.23999 6.40451 6.62409 6.97933 7.14690 7.58484 8.14406 8.72236 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.037842 B = 0.001622 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.746062 B =17261.350647 C =17739.755418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.096 4.096 3 C -0.237 4.237 4 C 0.014 3.986 5 O -0.172 6.172 6 C -0.121 4.121 7 C 0.598 3.402 8 O -0.554 6.554 9 N -0.711 5.711 10 C 0.127 3.873 11 C -0.115 4.115 12 C 0.059 3.941 13 N -0.538 5.538 14 C 0.025 3.975 15 C 0.057 3.943 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.576 5.576 19 C -0.331 4.331 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.272 1.272 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.181 0.819 31 H 0.254 0.746 32 H 0.415 0.585 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.028 0.972 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 29.503 4.065 30.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.256 4.256 4 C -0.056 4.056 5 O -0.068 6.068 6 C -0.173 4.173 7 C 0.386 3.614 8 O -0.435 6.435 9 N -0.361 5.361 10 C 0.004 3.996 11 C -0.153 4.153 12 C -0.069 4.069 13 N -0.263 5.263 14 C -0.123 4.123 15 C -0.074 4.074 16 C 0.229 3.771 17 O -0.500 6.500 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.197 1.197 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.199 0.801 31 H 0.270 0.730 32 H 0.251 0.749 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.128 0.872 44 H 0.229 0.771 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.337 29.347 3.666 30.472 hybrid contribution 0.104 -1.072 0.448 1.166 sum -7.232 28.275 4.113 29.474 Atomic orbital electron populations 1.20433 0.88022 1.03604 1.03072 1.21039 0.98275 0.91863 0.98689 1.22107 0.92351 1.00766 1.10368 1.25332 1.01423 0.79673 0.99142 1.84054 1.27495 1.24214 1.71002 1.21691 0.82522 0.94478 1.18568 1.16720 0.85481 0.82668 0.76506 1.90828 1.16957 1.83081 1.52594 1.45854 1.10347 1.06157 1.73764 1.21311 0.96998 0.78645 1.02691 1.21630 0.96920 0.92856 1.03905 1.22079 0.90890 0.91783 1.02184 1.61497 1.23342 1.05262 1.36153 1.22463 0.98311 1.02962 0.88593 1.21748 0.94155 0.88610 1.02928 1.20801 0.91503 0.82570 0.82249 1.90459 1.30071 1.72177 1.57299 1.41952 1.09365 1.07104 1.62925 1.19699 0.88236 0.91062 1.47113 0.90301 1.26029 1.01120 0.97616 0.96570 1.69678 1.23841 1.13205 1.49533 0.84869 0.77500 0.77713 0.78232 1.19797 1.19650 1.19682 0.90516 0.91568 0.89366 0.80137 0.73007 0.74891 0.91122 0.91167 0.90558 0.90462 0.93430 0.89599 0.95335 0.92806 0.89904 0.91520 0.87216 0.77059 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.82 71.24 0.70 -0.83 16 2 C -0.10 -1.68 6.20 -19.74 -0.12 -1.80 16 3 C -0.24 -2.63 10.83 22.07 0.24 -2.40 16 4 C 0.01 0.12 12.08 67.10 0.81 0.93 16 5 O -0.17 -2.68 10.40 -4.97 -0.05 -2.74 16 6 C -0.12 -2.41 7.13 24.07 0.17 -2.24 16 7 C 0.60 13.62 7.79 86.44 0.67 14.29 16 8 O -0.55 -15.65 14.74 -4.32 -0.06 -15.71 16 9 N -0.71 -12.97 5.55 -467.10 -2.59 -15.56 16 10 C 0.13 2.27 5.67 86.38 0.49 2.76 16 11 C -0.11 -2.10 5.25 30.59 0.16 -1.94 16 12 C 0.06 1.28 4.96 86.30 0.43 1.71 16 13 N -0.54 -16.79 4.50 -927.03 -4.17 -20.96 16 14 C 0.02 0.76 8.96 127.69 1.14 1.90 16 15 C 0.06 1.95 5.45 85.56 0.47 2.42 16 16 C 0.44 21.03 7.47 87.66 0.66 21.69 16 17 O -0.61 -33.79 13.91 -3.07 -0.04 -33.83 16 18 N -0.58 -29.70 5.29 -306.98 -1.62 -31.32 16 19 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 22 N -0.92 -49.95 13.05 21.66 0.28 -49.66 16 23 Si 0.99 43.13 29.55 68.60 2.03 45.15 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.36 6.44 -2.39 -0.02 1.35 16 29 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 31 H 0.25 -0.25 8.06 -2.91 -0.02 -0.27 16 32 H 0.41 6.08 8.23 -92.71 -0.76 5.31 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.34 6.55 -2.39 -0.02 1.33 16 37 H 0.05 0.94 8.12 -2.38 -0.02 0.92 16 38 H 0.09 1.75 7.93 -2.39 -0.02 1.73 16 39 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 2.14 5.83 -2.38 -0.01 2.12 16 41 H 0.08 2.13 6.47 -2.39 -0.02 2.12 16 42 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 43 H 0.11 3.32 7.93 -2.39 -0.02 3.30 16 44 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 45 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -74.80 379.05 0.39 -74.41 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.47 Total: 32.09 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 7.10 Total: 18.14 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -8.10 Total: -117.51 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.16 Total: -52.28 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -74.80 0.39 -74.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233947492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.014 kcal (2) G-P(sol) polarization free energy of solvation -74.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds