Wall clock time and date at job start Tue Mar 31 2020 13:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45193 * 109.47149 * 2 1 4 4 C 1.34227 * 117.00353 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99761 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00633 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47297 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47426 * 54.09172 * 7 6 4 9 9 C 1.50700 * 109.47159 * 174.09442 * 7 6 4 10 10 H 1.08004 * 120.00026 * 94.91008 * 9 7 6 11 11 C 1.37871 * 120.00250 * 274.91478 * 9 7 6 12 12 N 1.31516 * 120.00293 * 189.45963 * 11 9 7 13 13 Si 1.86801 * 119.99818 * 9.45455 * 11 9 7 14 14 H 1.48504 * 109.47099 * 87.95827 * 13 11 9 15 15 H 1.48506 * 109.47004 * 207.95565 * 13 11 9 16 16 H 1.48498 * 109.47202 * 327.95598 * 13 11 9 17 17 O 1.42903 * 109.46994 * 294.09334 * 7 6 4 18 18 C 1.35996 * 117.00081 * 154.59168 * 17 7 6 19 19 C 1.39231 * 120.40829 * 5.75238 * 18 17 7 20 20 C 1.38356 * 118.43912 * 179.72459 * 19 18 17 21 21 C 1.38886 * 119.16965 * 0.49148 * 20 19 18 22 22 O 1.35757 * 119.62738 * 179.77218 * 21 20 19 23 23 C 1.42900 * 117.00437 * 179.72827 * 22 21 20 24 24 C 1.53001 * 109.47226 * 270.00232 * 23 22 21 25 25 C 1.53003 * 109.47584 * 149.99762 * 23 22 21 26 26 N 1.32193 * 120.74762 * 359.49648 * 21 20 19 27 27 C 1.31983 * 121.70442 * 0.25302 * 26 21 20 28 28 H 1.08995 * 109.47035 * 299.99832 * 1 2 3 29 29 H 1.08999 * 109.47626 * 59.99872 * 1 2 3 30 30 H 1.09002 * 109.47013 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46649 * 239.99969 * 2 1 3 32 32 H 1.08997 * 109.47394 * 120.00609 * 2 1 3 33 33 H 1.08998 * 109.46763 * 59.99489 * 6 4 3 34 34 H 1.09006 * 109.46459 * 299.99881 * 6 4 3 35 35 H 0.97000 * 120.00060 * 179.97438 * 12 11 9 36 36 H 1.08006 * 120.77995 * 359.97438 * 19 18 17 37 37 H 1.08003 * 120.41946 * 180.26767 * 20 19 18 38 38 H 1.09003 * 109.46615 * 29.99633 * 23 22 21 39 39 H 1.09006 * 109.47178 * 59.99280 * 24 23 22 40 40 H 1.08996 * 109.46978 * 179.97438 * 24 23 22 41 41 H 1.08999 * 109.46837 * 300.00035 * 24 23 22 42 42 H 1.08998 * 109.47167 * 179.97438 * 25 23 22 43 43 H 1.08996 * 109.46922 * 300.00458 * 25 23 22 44 44 H 1.08999 * 109.46621 * 59.99878 * 25 23 22 45 45 H 1.08001 * 119.61844 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 6 5.4486 2.8573 -0.0014 8 1 5.7792 2.2370 -0.8345 9 6 6.0242 4.2424 -0.1471 10 1 6.3102 4.8034 0.7304 11 6 6.1854 4.7937 -1.4004 12 7 6.8542 5.9171 -1.5437 13 14 5.4542 3.9449 -2.8952 14 1 4.0581 4.4101 -3.0950 15 1 6.2625 4.2748 -4.0965 16 1 5.4607 2.4753 -2.6824 17 8 5.8966 2.2822 1.2277 18 6 7.1031 1.6548 1.2123 19 6 7.9023 1.6921 0.0728 20 6 9.1247 1.0448 0.1038 21 6 9.5069 0.3752 1.2590 22 8 10.7023 -0.2670 1.2981 23 6 11.0418 -0.9326 2.5162 24 6 11.7941 0.0340 3.4331 25 6 11.9308 -2.1391 2.2077 26 7 8.7222 0.3606 2.3228 27 6 7.5523 0.9714 2.3301 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5852 3.4690 0.8904 34 1 3.5844 3.4700 -0.8896 35 1 6.9679 6.3047 -2.4256 36 1 7.5774 2.2175 -0.8132 37 1 9.7720 1.0570 -0.7606 38 1 10.1314 -1.2694 3.0120 39 1 11.1607 0.8936 3.6528 40 1 12.0526 -0.4735 4.3623 41 1 12.7044 0.3709 2.9372 42 1 12.1900 -2.6464 3.1369 43 1 11.3948 -2.8277 1.5546 44 1 12.8411 -1.8022 1.7118 45 1 6.9383 0.9383 3.2180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234047037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:20 Heat of formation + Delta-G solvation = -152.305463 kcal Electronic energy + Delta-G solvation = -27738.127016 eV Core-core repulsion = 23721.002211 eV Total energy + Delta-G solvation = -4017.124805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.87641 -41.46261 -40.07089 -38.45883 -37.54252 -35.26135 -34.12729 -33.40481 -33.08633 -32.39622 -30.05220 -28.46770 -28.12303 -25.38484 -24.65502 -24.00076 -23.11678 -22.18011 -21.35970 -19.72268 -19.34627 -19.01234 -18.51885 -17.96295 -17.61564 -17.23117 -16.70177 -16.40460 -15.91322 -15.68090 -15.42400 -15.28369 -15.08933 -14.71808 -14.54220 -14.43017 -14.13260 -13.96266 -13.75714 -13.55557 -13.42304 -13.20783 -13.13075 -13.05462 -12.89156 -12.76166 -12.58432 -12.49017 -12.06797 -11.89370 -11.85334 -11.59716 -11.53148 -11.51102 -11.20250 -10.91562 -10.69637 -10.63602 -8.81125 -8.44905 -6.55211 0.12414 0.38942 1.17261 1.24148 1.30398 1.35764 1.68695 2.05875 2.18016 2.46802 2.79498 2.89342 3.35545 3.75371 3.81762 3.95211 4.00000 4.02105 4.08292 4.10051 4.14311 4.21250 4.29681 4.33315 4.34931 4.45907 4.61046 4.72133 4.79729 4.82474 4.86702 4.89651 4.92682 4.93756 4.99840 5.13484 5.20219 5.23142 5.28081 5.29394 5.37720 5.45384 6.00683 6.25490 6.45685 6.64121 6.75171 6.84441 7.13912 8.70546 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010762 B = 0.003989 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.061440 B = 7017.350285 C = 8848.931662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.362 6.362 4 C 0.463 3.537 5 O -0.531 6.531 6 C -0.110 4.110 7 C 0.200 3.800 8 H 0.039 0.961 9 C -0.547 4.547 10 H 0.046 0.954 11 C 0.046 3.954 12 N -0.918 5.918 13 Si 0.901 3.099 14 H -0.241 1.241 15 H -0.276 1.276 16 H -0.252 1.252 17 O -0.312 6.312 18 C 0.066 3.934 19 C -0.126 4.126 20 C -0.156 4.156 21 C 0.266 3.734 22 O -0.313 6.313 23 C 0.071 3.929 24 C -0.163 4.163 25 C -0.142 4.142 26 N -0.505 5.505 27 C 0.091 3.909 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.275 0.725 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 -14.147 4.169 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 O -0.279 6.279 4 C 0.307 3.693 5 O -0.420 6.420 6 C -0.147 4.147 7 C 0.144 3.856 8 H 0.057 0.943 9 C -0.584 4.584 10 H 0.064 0.936 11 C -0.156 4.156 12 N -0.555 5.555 13 Si 0.723 3.277 14 H -0.165 1.165 15 H -0.201 1.201 16 H -0.176 1.176 17 O -0.225 6.225 18 C 0.017 3.983 19 C -0.153 4.153 20 C -0.177 4.177 21 C 0.087 3.913 22 O -0.222 6.222 23 C 0.015 3.985 24 C -0.221 4.221 25 C -0.199 4.199 26 N -0.229 5.229 27 C -0.065 4.065 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.084 0.916 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.128 -14.753 4.740 15.641 hybrid contribution -0.360 0.717 -1.589 1.781 sum -2.489 -14.035 3.151 14.598 Atomic orbital electron populations 1.21817 0.89945 1.04446 1.03805 1.23326 0.97421 0.79430 1.02374 1.86534 1.23763 1.33771 1.83854 1.24236 0.80695 0.93071 0.71295 1.90622 1.61074 1.43916 1.46394 1.22017 0.95212 0.90235 1.07248 1.20215 0.89931 0.92580 0.82887 0.94305 1.21248 1.43373 0.99881 0.93912 0.93578 1.25548 0.93747 0.95306 1.01022 1.70004 1.39060 1.21142 1.25270 0.86487 0.81050 0.80334 0.79785 1.16455 1.20108 1.17645 1.85876 1.31602 1.67892 1.37144 1.20053 0.87469 0.95127 0.95625 1.21729 0.94552 0.99608 0.99366 1.21044 0.97346 1.00362 0.98925 1.19647 0.86976 0.94157 0.90506 1.86255 1.30879 1.65457 1.39591 1.22573 0.99100 0.93314 0.83532 1.22185 1.00265 0.99408 1.00203 1.21895 0.99207 0.95084 1.03761 1.67234 1.05654 1.22104 1.27914 1.21884 0.92212 0.95057 0.97313 0.91101 0.91251 0.87956 0.91683 0.91473 0.85425 0.86347 0.91583 0.84625 0.82761 0.90470 0.94196 0.88858 0.91779 0.88198 0.92227 0.91360 0.80241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 10.29 71.98 0.74 -1.55 16 2 C 0.05 1.16 6.19 71.98 0.45 1.61 16 3 O -0.36 -11.25 10.22 -51.39 -0.53 -11.78 16 4 C 0.46 17.20 7.84 71.24 0.56 17.76 16 5 O -0.53 -22.41 15.19 26.82 0.41 -22.01 16 6 C -0.11 -4.23 5.24 29.85 0.16 -4.08 16 7 C 0.20 9.15 0.74 29.85 0.02 9.17 16 8 H 0.04 1.87 3.85 -2.39 -0.01 1.86 16 9 C -0.55 -28.93 8.38 25.60 0.21 -28.71 16 10 H 0.05 2.79 8.06 -2.91 -0.02 2.76 16 11 C 0.05 2.43 5.47 84.65 0.46 2.90 16 12 N -0.92 -52.50 13.96 21.45 0.30 -52.20 16 13 Si 0.90 38.83 25.76 68.60 1.77 40.60 16 14 H -0.24 -9.45 7.11 99.48 0.71 -8.74 16 15 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.25 -10.62 6.08 99.48 0.61 -10.01 16 17 O -0.31 -14.25 9.09 -80.60 -0.73 -14.98 16 18 C 0.07 2.85 6.61 22.57 0.15 3.00 16 19 C -0.13 -5.45 8.81 22.54 0.20 -5.25 16 20 C -0.16 -5.95 10.04 22.45 0.23 -5.73 16 21 C 0.27 9.78 7.45 84.79 0.63 10.41 16 22 O -0.31 -10.10 9.76 -90.83 -0.89 -10.99 16 23 C 0.07 1.79 3.11 30.60 0.10 1.88 16 24 C -0.16 -3.70 9.53 71.98 0.69 -3.01 16 25 C -0.14 -2.58 9.56 71.98 0.69 -1.89 16 26 N -0.51 -18.53 8.64 -308.57 -2.67 -21.19 16 27 C 0.09 3.47 11.13 84.73 0.94 4.42 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.58 8.13 -2.39 -0.02 1.57 16 32 H 0.07 1.63 8.13 -2.39 -0.02 1.61 16 33 H 0.13 4.52 8.14 -2.39 -0.02 4.50 16 34 H 0.12 4.33 6.12 -2.38 -0.01 4.32 16 35 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.14 6.24 5.85 -2.91 -0.02 6.23 16 37 H 0.15 5.11 8.06 -2.91 -0.02 5.09 16 38 H 0.08 2.10 6.98 -2.39 -0.02 2.08 16 39 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.18 5.84 8.06 -2.91 -0.02 5.81 16 Total: -1.00 -65.88 376.28 4.77 -61.11 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.89 Total: 30.52 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 6.22 Total: 0.91 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -2.37 Total: -73.39 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -1.74 Total: -59.75 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.77 Total: 40.60 kcal Total: -65.88 4.77 -61.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234047037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.198 kcal (2) G-P(sol) polarization free energy of solvation -65.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds