Wall clock time and date at job start Tue Mar 31 2020 13:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 110.99975 * 2 1 4 4 C 1.52993 * 109.46947 * 66.04832 * 3 2 1 5 5 C 1.53004 * 109.46988 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47353 * 179.97438 * 5 4 3 7 7 C 1.34774 * 120.00112 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99915 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99847 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.46903 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99918 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00285 * 0.02562 * 11 10 9 13 13 C 1.38804 * 119.99820 * 179.97438 * 11 10 9 14 14 N 1.31622 * 120.00174 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99736 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47515 * 60.00222 * 15 13 11 17 17 H 1.48503 * 109.47113 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47303 * 300.00187 * 15 13 11 19 19 C 1.46904 * 111.00121 * 236.04413 * 2 1 3 20 20 C 1.50695 * 109.47190 * 293.95627 * 19 2 1 21 21 C 1.38678 * 120.41675 * 270.25239 * 20 19 2 22 22 C 1.38627 * 118.41930 * 180.24221 * 21 20 19 23 23 C 1.38232 * 119.16085 * 359.75178 * 22 21 20 24 24 N 1.31857 * 120.76541 * 359.97438 * 23 22 21 25 25 C 1.31889 * 121.72235 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.46973 * 183.95386 * 1 2 3 27 27 H 1.08998 * 109.46823 * 303.95614 * 1 2 3 28 28 H 1.08996 * 109.47167 * 63.95467 * 1 2 3 29 29 H 1.09000 * 109.46788 * 186.04531 * 3 2 1 30 30 H 1.08994 * 109.46987 * 306.04018 * 3 2 1 31 31 H 1.09000 * 109.47131 * 299.99489 * 4 3 2 32 32 H 1.08994 * 109.47941 * 59.99771 * 4 3 2 33 33 H 1.09000 * 109.46592 * 299.99605 * 5 4 3 34 34 H 1.08999 * 109.47260 * 59.99779 * 5 4 3 35 35 H 0.97004 * 119.99970 * 359.97438 * 6 5 4 36 36 H 1.08994 * 109.47536 * 300.00238 * 9 7 6 37 37 H 1.08999 * 109.46895 * 60.00264 * 9 7 6 38 38 H 0.97004 * 120.00098 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.46737 * 173.95446 * 19 2 1 40 40 H 1.08996 * 109.46745 * 53.95365 * 19 2 1 41 41 H 1.07994 * 120.78944 * 359.96926 * 21 20 19 42 42 H 1.07997 * 120.42083 * 179.72800 * 22 21 20 43 43 H 1.07999 * 119.61954 * 180.02562 * 23 22 21 44 44 H 1.08002 * 119.61237 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1793 3.4860 1.3180 6 7 1.8303 4.1431 2.5800 7 6 2.2117 5.4160 2.8050 8 8 2.8443 6.0174 1.9629 9 6 1.8522 6.0921 4.1030 10 16 2.5016 7.7816 4.1033 11 6 1.9529 8.3200 5.6888 12 1 1.3929 7.6487 6.3231 13 6 2.2412 9.6064 6.1229 14 7 2.9240 10.4243 5.3501 15 14 1.6600 10.1770 7.8041 16 1 2.2465 9.3045 8.8530 17 1 2.0928 11.5799 8.0276 18 1 0.1784 10.1003 7.8680 19 6 1.9955 -0.7660 -1.1376 20 6 1.6370 -2.2204 -0.9729 21 6 2.4878 -3.0809 -0.2955 22 6 2.1194 -4.4117 -0.1727 23 6 0.9224 -4.8326 -0.7212 24 7 0.1354 -3.9849 -1.3541 25 6 0.4537 -2.7122 -1.4899 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5740 0.8524 28 1 -0.3633 0.4512 -0.9233 29 1 3.0798 1.3444 -0.1082 30 1 1.5612 1.9273 -0.8309 31 1 0.5473 2.0845 1.4265 32 1 2.0658 1.5016 2.1492 33 1 3.2636 3.4593 1.2096 34 1 1.7446 4.0417 0.4871 35 1 1.3247 3.6620 3.2537 36 1 0.7679 6.1192 4.2104 37 1 2.2859 5.5364 4.9343 38 1 3.1252 11.3235 5.6534 39 1 3.0798 -0.6611 -1.1755 40 1 1.5612 -0.3873 -2.0627 41 1 3.4172 -2.7237 0.1226 42 1 2.7598 -5.1109 0.3445 43 1 0.6280 -5.8677 -0.6295 44 1 -0.2163 -2.0477 -2.0153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234146746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:47 Heat of formation + Delta-G solvation = -3.233278 kcal Electronic energy + Delta-G solvation = -22962.143710 eV Core-core repulsion = 19426.528782 eV Total energy + Delta-G solvation = -3535.614928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.71096 -39.22313 -38.17147 -35.24431 -33.33325 -32.42933 -32.36877 -31.18646 -29.09045 -27.93768 -26.20724 -25.44821 -23.98221 -23.56643 -21.81036 -21.28784 -20.20608 -17.83122 -17.52060 -16.89753 -16.55747 -16.30258 -16.15506 -15.82079 -15.41284 -15.14415 -14.80087 -14.52325 -14.34306 -14.01862 -13.88366 -13.54609 -13.42393 -13.11434 -12.87555 -12.62444 -12.41844 -12.25948 -12.22519 -11.83591 -11.65864 -11.62843 -11.04288 -11.04094 -10.99544 -10.76543 -10.23654 -9.88441 -9.82198 -9.51163 -9.40246 -9.06130 -8.88910 -8.80305 -8.23783 -6.49810 -6.21230 -3.91930 0.61988 0.85250 2.99961 3.10694 3.20955 3.23770 3.28248 3.33106 3.60879 3.80225 3.97847 4.20936 4.24781 4.34778 4.52639 4.56172 4.58598 4.72909 4.79852 4.90280 4.94784 5.06752 5.13819 5.14762 5.20453 5.21562 5.23634 5.32493 5.37015 5.48526 5.58521 5.66616 5.67133 5.82859 5.85279 5.92504 5.98488 6.14524 6.23102 6.51202 6.53832 6.64033 7.51981 7.59518 7.71520 8.35294 8.62003 9.23902 10.86142 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.037721 B = 0.001522 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.119879 B =18389.190963 C =18670.258006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.537 5.537 3 C 0.058 3.942 4 C -0.127 4.127 5 C 0.122 3.878 6 N -0.739 5.739 7 C 0.531 3.469 8 O -0.519 6.519 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.096 3.904 20 C -0.128 4.128 21 C -0.055 4.055 22 C -0.173 4.173 23 C 0.095 3.905 24 N -0.487 5.487 25 C 0.103 3.897 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.087 0.913 40 H 0.049 0.951 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.155 0.845 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.575 -29.846 -12.438 32.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.261 5.261 3 C -0.070 4.070 4 C -0.165 4.165 5 C -0.002 4.002 6 N -0.394 5.394 7 C 0.317 3.683 8 O -0.393 6.393 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 C -0.032 4.032 20 C -0.130 4.130 21 C -0.081 4.081 22 C -0.193 4.193 23 C -0.062 4.062 24 N -0.195 5.195 25 C -0.054 4.054 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.172 0.828 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.057 -29.174 -13.813 32.423 hybrid contribution -0.836 0.071 2.057 2.222 sum -3.894 -29.103 -11.755 31.628 Atomic orbital electron populations 1.22544 0.87185 1.02433 1.01096 1.61984 1.08302 1.13652 1.42135 1.22035 1.00626 0.87380 0.96943 1.21781 1.01743 0.94590 0.98415 1.21183 1.00430 0.91695 0.86926 1.45980 1.59465 1.14273 1.19657 1.20312 0.78551 0.80781 0.88638 1.90699 1.38362 1.63886 1.46343 1.23532 1.05002 1.05144 0.96742 1.85389 1.72290 1.01578 1.24142 1.22836 1.41480 1.01500 1.02684 0.90967 1.24987 0.94767 0.95515 0.98264 1.70006 1.36712 1.07075 1.36500 0.86224 0.79091 0.77767 0.82412 1.19939 1.20802 1.19950 1.20986 1.00937 0.88986 0.92298 1.20748 0.96188 0.96483 0.99610 1.21507 0.99264 0.92836 0.94517 1.22189 0.98605 0.96795 1.01694 1.22792 0.90707 0.99482 0.93250 1.67707 1.33195 1.03616 1.14976 1.22684 0.94223 0.91967 0.96532 0.91338 0.90707 0.95245 0.90129 0.94093 0.91179 0.90313 0.91585 0.91800 0.76809 0.89236 0.89210 0.92129 0.89414 0.93333 0.84645 0.84697 0.82819 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 8.96 60.07 0.54 0.64 16 2 N -0.54 -3.66 4.75 -244.37 -1.16 -4.82 16 3 C 0.06 0.40 4.96 -3.82 -0.02 0.38 16 4 C -0.13 -0.97 5.26 -26.73 -0.14 -1.11 16 5 C 0.12 1.34 5.67 -4.04 -0.02 1.32 16 6 N -0.74 -9.67 5.56 -60.29 -0.33 -10.01 16 7 C 0.53 9.91 7.85 -10.98 -0.09 9.82 16 8 O -0.52 -11.83 15.86 5.56 0.09 -11.74 16 9 C -0.15 -3.10 6.16 36.01 0.22 -2.87 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 12 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 15 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 19 C 0.10 0.56 5.14 -4.98 -0.03 0.53 16 20 C -0.13 -0.85 4.89 -104.48 -0.51 -1.36 16 21 C -0.05 -0.34 9.86 -39.28 -0.39 -0.72 16 22 C -0.17 -0.98 10.11 -39.44 -0.40 -1.38 16 23 C 0.09 0.64 11.18 -17.54 -0.20 0.44 16 24 N -0.49 -4.24 10.36 -13.25 -0.14 -4.37 16 25 C 0.10 0.77 9.15 -17.55 -0.16 0.61 16 26 H 0.07 0.47 6.17 -51.93 -0.32 0.15 16 27 H 0.07 0.49 6.30 -51.93 -0.33 0.16 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.08 0.52 7.93 -51.93 -0.41 0.11 16 30 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.07 0.51 6.47 -51.93 -0.34 0.18 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 36 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.09 0.45 7.89 -51.93 -0.41 0.04 16 40 H 0.05 0.26 8.07 -51.93 -0.42 -0.16 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 44 H 0.15 0.89 8.04 -52.49 -0.42 0.47 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -35.68 381.99 -10.04 -45.73 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.76 Total: -0.86 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.99 Total: -6.73 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.90 Total: -44.66 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.68 -10.04 -45.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234146746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.493 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds