Wall clock time and date at job start Tue Mar 31 2020 13:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 110.99975 * 2 1 4 4 C 1.52993 * 109.46947 * 66.04832 * 3 2 1 5 5 C 1.53004 * 109.46988 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47353 * 179.97438 * 5 4 3 7 7 C 1.34774 * 120.00112 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99915 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99847 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.46903 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99918 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00285 * 0.02562 * 11 10 9 13 13 C 1.38804 * 119.99820 * 179.97438 * 11 10 9 14 14 N 1.31622 * 120.00174 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99736 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47515 * 60.00222 * 15 13 11 17 17 H 1.48503 * 109.47113 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47303 * 300.00187 * 15 13 11 19 19 C 1.46904 * 111.00121 * 236.04413 * 2 1 3 20 20 C 1.50695 * 109.47190 * 293.95627 * 19 2 1 21 21 C 1.38678 * 120.41675 * 270.25239 * 20 19 2 22 22 C 1.38627 * 118.41930 * 180.24221 * 21 20 19 23 23 C 1.38232 * 119.16085 * 359.75178 * 22 21 20 24 24 N 1.31857 * 120.76541 * 359.97438 * 23 22 21 25 25 C 1.31889 * 121.72235 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.46973 * 183.95386 * 1 2 3 27 27 H 1.08998 * 109.46823 * 303.95614 * 1 2 3 28 28 H 1.08996 * 109.47167 * 63.95467 * 1 2 3 29 29 H 1.09000 * 109.46788 * 186.04531 * 3 2 1 30 30 H 1.08994 * 109.46987 * 306.04018 * 3 2 1 31 31 H 1.09000 * 109.47131 * 299.99489 * 4 3 2 32 32 H 1.08994 * 109.47941 * 59.99771 * 4 3 2 33 33 H 1.09000 * 109.46592 * 299.99605 * 5 4 3 34 34 H 1.08999 * 109.47260 * 59.99779 * 5 4 3 35 35 H 0.97004 * 119.99970 * 359.97438 * 6 5 4 36 36 H 1.08994 * 109.47536 * 300.00238 * 9 7 6 37 37 H 1.08999 * 109.46895 * 60.00264 * 9 7 6 38 38 H 0.97004 * 120.00098 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.46737 * 173.95446 * 19 2 1 40 40 H 1.08996 * 109.46745 * 53.95365 * 19 2 1 41 41 H 1.07994 * 120.78944 * 359.96926 * 21 20 19 42 42 H 1.07997 * 120.42083 * 179.72800 * 22 21 20 43 43 H 1.07999 * 119.61954 * 180.02562 * 23 22 21 44 44 H 1.08002 * 119.61237 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1793 3.4860 1.3180 6 7 1.8303 4.1431 2.5800 7 6 2.2117 5.4160 2.8050 8 8 2.8443 6.0174 1.9629 9 6 1.8522 6.0921 4.1030 10 16 2.5016 7.7816 4.1033 11 6 1.9529 8.3200 5.6888 12 1 1.3929 7.6487 6.3231 13 6 2.2412 9.6064 6.1229 14 7 2.9240 10.4243 5.3501 15 14 1.6600 10.1770 7.8041 16 1 2.2465 9.3045 8.8530 17 1 2.0928 11.5799 8.0276 18 1 0.1784 10.1003 7.8680 19 6 1.9955 -0.7660 -1.1376 20 6 1.6370 -2.2204 -0.9729 21 6 2.4878 -3.0809 -0.2955 22 6 2.1194 -4.4117 -0.1727 23 6 0.9224 -4.8326 -0.7212 24 7 0.1354 -3.9849 -1.3541 25 6 0.4537 -2.7122 -1.4899 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5740 0.8524 28 1 -0.3633 0.4512 -0.9233 29 1 3.0798 1.3444 -0.1082 30 1 1.5612 1.9273 -0.8309 31 1 0.5473 2.0845 1.4265 32 1 2.0658 1.5016 2.1492 33 1 3.2636 3.4593 1.2096 34 1 1.7446 4.0417 0.4871 35 1 1.3247 3.6620 3.2537 36 1 0.7679 6.1192 4.2104 37 1 2.2859 5.5364 4.9343 38 1 3.1252 11.3235 5.6534 39 1 3.0798 -0.6611 -1.1755 40 1 1.5612 -0.3873 -2.0627 41 1 3.4172 -2.7237 0.1226 42 1 2.7598 -5.1109 0.3445 43 1 0.6280 -5.8677 -0.6295 44 1 -0.2163 -2.0477 -2.0153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234146746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:47 Heat of formation + Delta-G solvation = -28.977121 kcal Electronic energy + Delta-G solvation = -22963.260047 eV Core-core repulsion = 19426.528782 eV Total energy + Delta-G solvation = -3536.731265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.18403 -40.60393 -38.77672 -36.31054 -34.58001 -33.99912 -32.98158 -32.03804 -30.40585 -28.42212 -27.70411 -26.85993 -24.49670 -24.23251 -22.41159 -22.03809 -21.41779 -19.80299 -17.96820 -17.75877 -17.49829 -17.33742 -17.01070 -16.87134 -16.44908 -16.38949 -16.09755 -15.68893 -15.29073 -14.91581 -14.71126 -14.54564 -14.38215 -14.02149 -13.87206 -13.81133 -13.25497 -13.16414 -12.98230 -12.86201 -12.84522 -12.73067 -12.60635 -12.34665 -12.17286 -11.73524 -11.66168 -11.12306 -10.96368 -10.71514 -10.37732 -10.27579 -10.10372 -9.97617 -9.31342 -8.66329 -8.33876 -6.12240 0.15583 0.38276 1.27754 1.44634 1.47669 1.57509 1.62160 2.26014 2.29957 2.74597 3.00202 3.15536 3.33379 3.54866 3.79346 3.91769 3.94239 3.98807 4.10570 4.11300 4.17489 4.17639 4.30922 4.44191 4.46446 4.51630 4.52160 4.62834 4.68618 4.69930 4.78340 4.82203 4.90489 5.03037 5.17743 5.22453 5.23357 5.37853 5.42169 5.47205 5.79423 6.02033 6.04110 6.20186 6.52327 7.03809 7.07249 7.25776 8.75089 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.037721 B = 0.001522 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.119879 B =18389.190963 C =18670.258006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.542 5.542 3 C 0.060 3.940 4 C -0.112 4.112 5 C 0.122 3.878 6 N -0.713 5.713 7 C 0.532 3.468 8 O -0.568 6.568 9 C -0.130 4.130 10 S -0.153 6.153 11 C -0.549 4.549 12 H 0.083 0.917 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.262 1.262 19 C 0.098 3.902 20 C -0.131 4.131 21 C -0.064 4.064 22 C -0.171 4.171 23 C 0.081 3.919 24 N -0.518 5.518 25 C 0.090 3.910 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.417 0.583 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.271 0.729 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.150 0.850 42 H 0.159 0.841 43 H 0.173 0.827 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 -31.728 -11.091 33.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.266 5.266 3 C -0.068 4.068 4 C -0.150 4.150 5 C -0.002 4.002 6 N -0.367 5.367 7 C 0.318 3.682 8 O -0.446 6.446 9 C -0.281 4.281 10 S 0.074 5.926 11 C -0.696 4.696 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.030 4.030 20 C -0.134 4.134 21 C -0.090 4.090 22 C -0.191 4.191 23 C -0.076 4.076 24 N -0.227 5.227 25 C -0.067 4.067 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.254 0.746 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.168 0.832 42 H 0.177 0.823 43 H 0.190 0.810 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.790 -31.123 -12.462 33.739 hybrid contribution -0.626 0.498 1.567 1.759 sum -4.416 -30.625 -10.895 32.804 Atomic orbital electron populations 1.22521 0.87131 1.02124 1.01328 1.61963 1.08412 1.13478 1.42728 1.21987 1.00998 0.87443 0.96341 1.21642 1.02022 0.92169 0.99153 1.21318 1.00231 0.93297 0.85340 1.45746 1.57821 1.12335 1.20787 1.20071 0.78395 0.82188 0.87556 1.90688 1.40909 1.65457 1.47568 1.23379 1.05803 1.00348 0.98594 1.85569 1.73887 1.07990 1.25116 1.23189 1.41556 1.02172 1.02723 0.89869 1.26125 0.94603 0.95536 1.02813 1.70175 1.38162 1.07535 1.38871 0.85004 0.78988 0.77306 0.76690 1.18649 1.20395 1.18680 1.21003 1.01444 0.88427 0.92124 1.20827 0.96016 0.96926 0.99586 1.21797 0.99742 0.93117 0.94339 1.22471 0.98405 0.97126 1.01091 1.23195 0.91076 1.00209 0.93112 1.67690 1.34403 1.04405 1.16173 1.22840 0.94871 0.91913 0.97059 0.91919 0.90605 0.94869 0.89624 0.94063 0.90349 0.89828 0.92245 0.92570 0.74648 0.87194 0.87171 0.91989 0.88526 0.92930 0.83216 0.82289 0.81025 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.96 127.69 1.14 1.34 16 2 N -0.54 -6.34 4.75 -927.06 -4.41 -10.75 16 3 C 0.06 0.70 4.96 86.30 0.43 1.13 16 4 C -0.11 -1.44 5.26 30.59 0.16 -1.28 16 5 C 0.12 2.48 5.67 86.38 0.49 2.97 16 6 N -0.71 -17.18 5.56 -463.06 -2.57 -19.75 16 7 C 0.53 19.40 7.85 87.66 0.69 20.09 16 8 O -0.57 -26.26 15.86 -3.03 -0.05 -26.30 16 9 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 10 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 11 C -0.55 -31.31 9.50 67.96 0.65 -30.67 16 12 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 13 C 0.01 0.80 5.49 84.86 0.47 1.27 16 14 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 15 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 16 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 C 0.10 0.99 5.14 85.55 0.44 1.43 16 20 C -0.13 -1.59 4.89 -19.77 -0.10 -1.68 16 21 C -0.06 -0.68 9.86 22.47 0.22 -0.46 16 22 C -0.17 -1.66 10.11 22.36 0.23 -1.43 16 23 C 0.08 1.01 11.18 84.69 0.95 1.96 16 24 N -0.52 -8.84 10.36 -195.83 -2.03 -10.87 16 25 C 0.09 1.30 9.15 84.67 0.77 2.07 16 26 H 0.06 0.80 6.17 -2.39 -0.01 0.79 16 27 H 0.08 0.84 6.30 -2.39 -0.02 0.82 16 28 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.09 0.93 7.93 -2.39 -0.02 0.91 16 30 H 0.04 0.49 8.12 -2.39 -0.02 0.47 16 31 H 0.08 0.92 6.47 -2.39 -0.02 0.91 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.42 7.13 8.47 -92.71 -0.79 6.34 16 36 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 37 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.10 0.80 7.89 -2.39 -0.02 0.78 16 40 H 0.05 0.49 8.07 -2.39 -0.02 0.47 16 41 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 42 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 43 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 44 H 0.16 1.83 8.04 -2.91 -0.02 1.80 16 Total: -1.00 -79.14 381.99 -0.72 -79.86 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.21 Total: 15.65 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 6.97 Total: -7.92 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -8.72 Total: -97.07 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.30 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -79.14 -0.72 -79.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234146746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.881 kcal (2) G-P(sol) polarization free energy of solvation -79.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds