Wall clock time and date at job start Tue Mar 31 2020 13:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00186 * 2 1 4 4 C 1.52999 * 109.47471 * 66.04501 * 3 2 1 5 5 C 1.53001 * 109.47036 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47026 * 180.02562 * 5 4 3 7 7 C 1.34775 * 120.00418 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99639 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00347 * 179.97438 * 7 6 5 10 10 S 1.80996 * 109.47202 * 180.02562 * 9 7 6 11 11 C 1.76201 * 100.00284 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99654 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00364 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99912 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00024 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47101 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47142 * 119.99730 * 15 13 11 18 18 H 1.48498 * 109.46671 * 239.99529 * 15 13 11 19 19 C 1.46900 * 111.00163 * 236.04118 * 2 1 3 20 20 C 1.50703 * 109.47016 * 293.96230 * 19 2 1 21 21 C 1.38223 * 119.62264 * 95.01930 * 20 19 2 22 22 C 1.38628 * 119.16031 * 179.97438 * 21 20 19 23 23 C 1.38672 * 118.42475 * 359.97438 * 22 21 20 24 24 C 1.38186 * 119.15778 * 0.02562 * 23 22 21 25 25 N 1.31856 * 119.61279 * 274.99401 * 20 19 2 26 26 H 1.08997 * 109.47150 * 183.95677 * 1 2 3 27 27 H 1.09008 * 109.47178 * 303.95974 * 1 2 3 28 28 H 1.09003 * 109.46703 * 63.95248 * 1 2 3 29 29 H 1.09002 * 109.47096 * 186.04500 * 3 2 1 30 30 H 1.09000 * 109.47351 * 306.03946 * 3 2 1 31 31 H 1.09002 * 109.46959 * 300.00083 * 4 3 2 32 32 H 1.09000 * 109.47054 * 60.00339 * 4 3 2 33 33 H 1.08996 * 109.47449 * 299.99453 * 5 4 3 34 34 H 1.08997 * 109.47619 * 60.00114 * 5 4 3 35 35 H 0.97000 * 119.99776 * 359.97438 * 6 5 4 36 36 H 1.09002 * 109.47118 * 300.00227 * 9 7 6 37 37 H 1.08992 * 109.46995 * 60.00209 * 9 7 6 38 38 H 0.96995 * 120.00139 * 180.02562 * 14 13 11 39 39 H 1.08989 * 109.47527 * 173.95770 * 19 2 1 40 40 H 1.08996 * 109.46581 * 53.95340 * 19 2 1 41 41 H 1.07995 * 120.41821 * 359.95030 * 21 20 19 42 42 H 1.08006 * 120.78822 * 180.02562 * 22 21 20 43 43 H 1.07993 * 120.42192 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.60956 * 180.27218 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1805 3.4856 1.3184 6 7 1.8325 4.1423 2.5809 7 6 2.2150 5.4148 2.8064 8 8 2.8470 6.0164 1.9639 9 6 1.8566 6.0906 4.1048 10 16 2.5061 7.7800 4.1051 11 6 1.9587 8.3181 5.6912 12 1 1.3985 7.6469 6.3253 13 6 2.2464 9.6047 6.1251 14 7 2.9287 10.4228 5.3519 15 14 1.6666 10.1748 7.8068 16 1 0.9264 9.0742 8.4745 17 1 2.8408 10.5546 8.6327 18 1 0.7713 11.3490 7.6498 19 6 1.9955 -0.7661 -1.1375 20 6 1.6368 -2.2205 -0.9727 21 6 0.5019 -2.7179 -1.5851 22 6 0.1812 -4.0574 -1.4276 23 6 1.0182 -4.8502 -0.6570 24 6 2.1358 -4.2826 -0.0753 25 7 2.4096 -3.0039 -0.2464 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3634 0.5741 0.8524 28 1 -0.3633 0.4513 -0.9233 29 1 3.0798 1.3443 -0.1082 30 1 1.5613 1.9273 -0.8310 31 1 0.5472 2.0845 1.4264 32 1 2.0659 1.5016 2.1491 33 1 3.2647 3.4581 1.2104 34 1 1.7466 4.0418 0.4875 35 1 1.3268 3.6613 3.2545 36 1 0.7723 6.1185 4.2126 37 1 2.2901 5.5342 4.9357 38 1 3.1301 11.3218 5.6553 39 1 3.0797 -0.6613 -1.1755 40 1 1.5611 -0.3874 -2.0627 41 1 -0.1274 -2.0711 -2.1785 42 1 -0.6991 -4.4737 -1.8947 43 1 0.7989 -5.8977 -0.5125 44 1 2.7951 -4.8944 0.5226 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234147054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:44 Heat of formation + Delta-G solvation = -1.229063 kcal Electronic energy + Delta-G solvation = -22961.939920 eV Core-core repulsion = 19426.411901 eV Total energy + Delta-G solvation = -3535.528019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69917 -39.17953 -38.05973 -35.13767 -33.02864 -32.63532 -32.41032 -31.17371 -29.07464 -27.99036 -26.25931 -25.44046 -23.94592 -23.53998 -21.80013 -21.23588 -20.16508 -17.81326 -17.27924 -16.79444 -16.53405 -16.25644 -16.10582 -15.94210 -15.39904 -15.11323 -14.78925 -14.57669 -14.33042 -13.94445 -13.84305 -13.65205 -13.27074 -13.07332 -12.81774 -12.60047 -12.32772 -12.19942 -12.18561 -11.80194 -11.67444 -11.55441 -11.05844 -11.00020 -10.93318 -10.73912 -10.30713 -9.82192 -9.78616 -9.50109 -9.36840 -9.06083 -8.84608 -8.73075 -8.20794 -6.47825 -6.20077 -3.90337 0.62589 0.84605 3.01923 3.14132 3.20108 3.22914 3.30320 3.35814 3.65470 3.82165 3.86481 4.22120 4.26991 4.40486 4.56414 4.63348 4.66901 4.76197 4.83411 4.95775 4.96382 5.11402 5.14602 5.15200 5.22804 5.24964 5.28195 5.36543 5.43811 5.52760 5.60873 5.65682 5.70523 5.71843 5.89609 5.97040 6.03906 6.17134 6.23102 6.57472 6.61151 6.68665 7.61709 7.61754 7.75493 8.37281 8.65594 9.25403 10.87460 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.037841 B = 0.001527 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.752326 B =18336.452835 C =18624.288573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.532 5.532 3 C 0.060 3.940 4 C -0.127 4.127 5 C 0.123 3.877 6 N -0.739 5.739 7 C 0.531 3.469 8 O -0.519 6.519 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.103 3.897 20 C 0.140 3.860 21 C -0.169 4.169 22 C -0.076 4.076 23 C -0.177 4.177 24 C 0.101 3.899 25 N -0.466 5.466 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.268 0.732 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.027 -31.259 -14.147 35.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.256 5.256 3 C -0.068 4.068 4 C -0.165 4.165 5 C -0.002 4.002 6 N -0.393 5.393 7 C 0.317 3.683 8 O -0.393 6.393 9 C -0.304 4.304 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.026 4.026 20 C 0.001 3.999 21 C -0.189 4.189 22 C -0.102 4.102 23 C -0.197 4.197 24 C -0.056 4.056 25 N -0.175 5.175 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.975 -29.934 -14.771 33.749 hybrid contribution -2.493 -0.684 1.249 2.871 sum -7.468 -30.618 -13.522 34.294 Atomic orbital electron populations 1.22536 0.87369 1.02244 1.01015 1.61860 1.07965 1.13694 1.42121 1.22027 1.00798 0.87129 0.96861 1.21780 1.01628 0.94576 0.98522 1.21185 1.00493 0.91688 0.86852 1.45979 1.59419 1.14298 1.19642 1.20306 0.78559 0.80793 0.88638 1.90701 1.38399 1.63873 1.46349 1.23528 1.04987 1.05107 0.96774 1.85394 1.72375 1.01611 1.24096 1.22918 1.41285 1.01465 1.02647 0.90868 1.24993 0.94804 0.95536 0.98268 1.70029 1.36887 1.07011 1.36380 0.86113 0.78492 0.78633 0.82233 1.19626 1.20562 1.20587 1.20967 1.01805 0.87714 0.92069 1.21062 0.90848 0.95666 0.92293 1.22007 0.98385 0.96459 1.02046 1.21579 0.98843 0.93577 0.96197 1.22179 0.96660 1.01433 0.99424 1.22822 0.95182 0.91123 0.96485 1.67508 1.30951 1.05082 1.13959 0.91569 0.90702 0.95349 0.89972 0.94159 0.91251 0.90237 0.91533 0.91809 0.76818 0.89253 0.89199 0.92252 0.88676 0.92970 0.85066 0.84865 0.84810 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.01 60.07 0.54 0.66 16 2 N -0.53 -4.34 4.75 -244.38 -1.16 -5.50 16 3 C 0.06 0.47 4.96 -3.83 -0.02 0.45 16 4 C -0.13 -1.07 5.26 -26.73 -0.14 -1.21 16 5 C 0.12 1.42 5.67 -4.04 -0.02 1.39 16 6 N -0.74 -10.02 5.56 -60.29 -0.33 -10.35 16 7 C 0.53 10.11 7.85 -10.99 -0.09 10.02 16 8 O -0.52 -12.02 15.86 5.55 0.09 -11.94 16 9 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 10 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 11 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 12 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 15 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.10 0.77 5.29 -4.97 -0.03 0.74 16 20 C 0.14 1.15 5.64 -82.59 -0.47 0.69 16 21 C -0.17 -1.06 8.36 -39.44 -0.33 -1.39 16 22 C -0.08 -0.41 10.18 -39.28 -0.40 -0.81 16 23 C -0.18 -0.97 10.11 -39.44 -0.40 -1.37 16 24 C 0.10 0.72 11.18 -17.55 -0.20 0.53 16 25 N -0.47 -4.47 10.27 -9.47 -0.10 -4.57 16 26 H 0.07 0.47 6.40 -51.93 -0.33 0.14 16 27 H 0.07 0.52 6.30 -51.92 -0.33 0.19 16 28 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.08 0.64 7.93 -51.93 -0.41 0.23 16 30 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 31 H 0.07 0.55 6.47 -51.93 -0.34 0.21 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 4.23 8.47 -40.82 -0.35 3.88 16 36 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 37 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.09 0.74 7.93 -51.93 -0.41 0.33 16 40 H 0.05 0.31 8.02 -51.93 -0.42 -0.10 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.39 8.06 -52.48 -0.42 -0.03 16 43 H 0.13 0.40 8.06 -52.49 -0.42 -0.03 16 44 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 382.62 15.07 5.77 5.77 Total: -1.00 -36.31 382.62 -10.14 -46.46 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.78 Total: -0.57 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.12 Total: -6.31 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.86 Total: -46.03 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.31 -10.14 -46.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234147054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.227 kcal (2) G-P(sol) polarization free energy of solvation -36.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds