Wall clock time and date at job start Tue Mar 31 2020 13:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00186 * 2 1 4 4 C 1.52999 * 109.47471 * 66.04501 * 3 2 1 5 5 C 1.53001 * 109.47036 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47026 * 180.02562 * 5 4 3 7 7 C 1.34775 * 120.00418 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99639 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00347 * 179.97438 * 7 6 5 10 10 S 1.80996 * 109.47202 * 180.02562 * 9 7 6 11 11 C 1.76201 * 100.00284 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99654 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00364 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99912 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00024 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47101 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47142 * 119.99730 * 15 13 11 18 18 H 1.48498 * 109.46671 * 239.99529 * 15 13 11 19 19 C 1.46900 * 111.00163 * 236.04118 * 2 1 3 20 20 C 1.50703 * 109.47016 * 293.96230 * 19 2 1 21 21 C 1.38223 * 119.62264 * 95.01930 * 20 19 2 22 22 C 1.38628 * 119.16031 * 179.97438 * 21 20 19 23 23 C 1.38672 * 118.42475 * 359.97438 * 22 21 20 24 24 C 1.38186 * 119.15778 * 0.02562 * 23 22 21 25 25 N 1.31856 * 119.61279 * 274.99401 * 20 19 2 26 26 H 1.08997 * 109.47150 * 183.95677 * 1 2 3 27 27 H 1.09008 * 109.47178 * 303.95974 * 1 2 3 28 28 H 1.09003 * 109.46703 * 63.95248 * 1 2 3 29 29 H 1.09002 * 109.47096 * 186.04500 * 3 2 1 30 30 H 1.09000 * 109.47351 * 306.03946 * 3 2 1 31 31 H 1.09002 * 109.46959 * 300.00083 * 4 3 2 32 32 H 1.09000 * 109.47054 * 60.00339 * 4 3 2 33 33 H 1.08996 * 109.47449 * 299.99453 * 5 4 3 34 34 H 1.08997 * 109.47619 * 60.00114 * 5 4 3 35 35 H 0.97000 * 119.99776 * 359.97438 * 6 5 4 36 36 H 1.09002 * 109.47118 * 300.00227 * 9 7 6 37 37 H 1.08992 * 109.46995 * 60.00209 * 9 7 6 38 38 H 0.96995 * 120.00139 * 180.02562 * 14 13 11 39 39 H 1.08989 * 109.47527 * 173.95770 * 19 2 1 40 40 H 1.08996 * 109.46581 * 53.95340 * 19 2 1 41 41 H 1.07995 * 120.41821 * 359.95030 * 21 20 19 42 42 H 1.08006 * 120.78822 * 180.02562 * 22 21 20 43 43 H 1.07993 * 120.42192 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.60956 * 180.27218 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1805 3.4856 1.3184 6 7 1.8325 4.1423 2.5809 7 6 2.2150 5.4148 2.8064 8 8 2.8470 6.0164 1.9639 9 6 1.8566 6.0906 4.1048 10 16 2.5061 7.7800 4.1051 11 6 1.9587 8.3181 5.6912 12 1 1.3985 7.6469 6.3253 13 6 2.2464 9.6047 6.1251 14 7 2.9287 10.4228 5.3519 15 14 1.6666 10.1748 7.8068 16 1 0.9264 9.0742 8.4745 17 1 2.8408 10.5546 8.6327 18 1 0.7713 11.3490 7.6498 19 6 1.9955 -0.7661 -1.1375 20 6 1.6368 -2.2205 -0.9727 21 6 0.5019 -2.7179 -1.5851 22 6 0.1812 -4.0574 -1.4276 23 6 1.0182 -4.8502 -0.6570 24 6 2.1358 -4.2826 -0.0753 25 7 2.4096 -3.0039 -0.2464 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3634 0.5741 0.8524 28 1 -0.3633 0.4513 -0.9233 29 1 3.0798 1.3443 -0.1082 30 1 1.5613 1.9273 -0.8310 31 1 0.5472 2.0845 1.4264 32 1 2.0659 1.5016 2.1491 33 1 3.2647 3.4581 1.2104 34 1 1.7466 4.0418 0.4875 35 1 1.3268 3.6613 3.2545 36 1 0.7723 6.1185 4.2126 37 1 2.2901 5.5342 4.9357 38 1 3.1301 11.3218 5.6553 39 1 3.0797 -0.6613 -1.1755 40 1 1.5611 -0.3874 -2.0627 41 1 -0.1274 -2.0711 -2.1785 42 1 -0.6991 -4.4737 -1.8947 43 1 0.7989 -5.8977 -0.5125 44 1 2.7951 -4.8944 0.5226 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234147054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:44 Heat of formation + Delta-G solvation = -27.684793 kcal Electronic energy + Delta-G solvation = -22963.087126 eV Core-core repulsion = 19426.411901 eV Total energy + Delta-G solvation = -3536.675225 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17775 -40.60465 -38.72754 -36.27152 -34.58203 -33.65794 -33.26913 -32.06041 -30.42958 -28.50998 -27.71885 -26.96216 -24.47071 -24.22329 -22.43281 -22.05380 -21.42751 -19.80866 -17.82491 -17.64856 -17.49547 -17.28038 -16.98801 -16.87795 -16.48435 -16.47496 -16.13641 -15.73021 -15.28130 -15.05477 -14.71749 -14.47840 -14.36655 -14.07952 -13.84361 -13.69293 -13.24889 -13.15614 -12.93180 -12.89604 -12.85148 -12.73236 -12.57799 -12.35997 -12.22345 -11.70312 -11.66471 -11.15459 -10.96396 -10.77237 -10.31874 -10.26912 -10.10771 -9.96330 -9.29842 -8.66453 -8.34439 -6.12584 0.16628 0.40521 1.27706 1.41987 1.47767 1.59076 1.61929 2.25171 2.29177 2.71025 2.99831 3.17421 3.33162 3.37154 3.83403 3.93314 3.95496 4.03564 4.10506 4.15269 4.20001 4.27665 4.30678 4.40439 4.44964 4.51369 4.51929 4.61618 4.62720 4.72365 4.78361 4.81614 4.90264 5.01721 5.16350 5.21490 5.23767 5.29988 5.42623 5.46395 5.80895 6.01733 6.05988 6.20546 6.52065 7.06992 7.13275 7.25419 8.75146 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.037841 B = 0.001527 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.752326 B =18336.452835 C =18624.288573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.545 5.545 3 C 0.062 3.938 4 C -0.111 4.111 5 C 0.123 3.877 6 N -0.713 5.713 7 C 0.532 3.468 8 O -0.568 6.568 9 C -0.130 4.130 10 S -0.153 6.153 11 C -0.546 4.546 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.257 1.257 17 H -0.274 1.274 18 H -0.274 1.274 19 C 0.104 3.896 20 C 0.119 3.881 21 C -0.171 4.171 22 C -0.079 4.079 23 C -0.174 4.174 24 C 0.081 3.919 25 N -0.504 5.504 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.416 0.584 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.271 0.729 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.148 0.852 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.159 -33.443 -13.404 37.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.269 5.269 3 C -0.066 4.066 4 C -0.149 4.149 5 C -0.001 4.001 6 N -0.367 5.367 7 C 0.318 3.682 8 O -0.446 6.446 9 C -0.281 4.281 10 S 0.074 5.926 11 C -0.694 4.694 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.180 1.180 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.024 4.024 20 C -0.019 4.019 21 C -0.191 4.191 22 C -0.105 4.105 23 C -0.194 4.194 24 C -0.075 4.075 25 N -0.214 5.214 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.253 0.747 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.166 0.834 42 H 0.178 0.822 43 H 0.178 0.822 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.135 -32.185 -14.024 35.825 hybrid contribution -1.850 -0.181 0.938 2.082 sum -8.985 -32.365 -13.086 36.048 Atomic orbital electron populations 1.22526 0.86635 1.02228 1.01532 1.61822 1.08726 1.13542 1.42823 1.21964 1.00726 0.87305 0.96593 1.21630 1.02127 0.92192 0.98933 1.21302 1.00143 0.93209 0.85451 1.45745 1.57807 1.12400 1.20723 1.20081 0.78383 0.82153 0.87596 1.90690 1.40919 1.65430 1.47582 1.23374 1.05845 1.00343 0.98522 1.85578 1.73980 1.07945 1.25095 1.23250 1.41395 1.02128 1.02651 0.89875 1.26135 0.94630 0.95543 1.02839 1.70191 1.38287 1.07543 1.38788 0.84890 0.78136 0.78395 0.76418 1.18032 1.19938 1.19897 1.20956 1.01242 0.87765 0.92433 1.21206 0.91753 0.95788 0.93126 1.22216 0.97877 0.97308 1.01744 1.21977 0.99532 0.93225 0.95744 1.22491 0.95754 1.02726 0.98429 1.23175 0.96360 0.90783 0.97216 1.67450 1.32280 1.06378 1.15309 0.91804 0.90586 0.94391 0.90340 0.93549 0.89979 0.90297 0.92479 0.92258 0.74656 0.87114 0.87221 0.91987 0.89779 0.91560 0.83419 0.82165 0.82211 0.81400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.01 127.69 1.15 1.38 16 2 N -0.54 -8.26 4.75 -927.07 -4.41 -12.67 16 3 C 0.06 0.90 4.96 86.30 0.43 1.33 16 4 C -0.11 -1.67 5.26 30.59 0.16 -1.51 16 5 C 0.12 2.70 5.67 86.38 0.49 3.19 16 6 N -0.71 -18.07 5.56 -463.06 -2.57 -20.65 16 7 C 0.53 19.92 7.85 87.66 0.69 20.61 16 8 O -0.57 -26.79 15.86 -3.06 -0.05 -26.84 16 9 C -0.13 -5.19 6.16 71.23 0.44 -4.75 16 10 S -0.15 -8.60 20.57 -56.49 -1.16 -9.77 16 11 C -0.55 -31.46 9.50 67.95 0.65 -30.81 16 12 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 13 C 0.01 0.76 5.49 84.86 0.47 1.22 16 14 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 15 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 16 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 C 0.10 1.50 5.29 85.56 0.45 1.95 16 20 C 0.12 1.89 5.64 42.55 0.24 2.13 16 21 C -0.17 -1.89 8.36 22.36 0.19 -1.70 16 22 C -0.08 -0.67 10.18 22.47 0.23 -0.44 16 23 C -0.17 -1.59 10.11 22.36 0.23 -1.36 16 24 C 0.08 1.12 11.18 84.67 0.95 2.06 16 25 N -0.50 -9.64 10.27 -183.88 -1.89 -11.53 16 26 H 0.06 0.81 6.40 -2.39 -0.02 0.80 16 27 H 0.08 0.89 6.30 -2.38 -0.02 0.87 16 28 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.08 1.19 7.93 -2.39 -0.02 1.17 16 30 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 31 H 0.08 1.07 6.47 -2.39 -0.02 1.05 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.42 7.65 8.47 -92.71 -0.79 6.86 16 36 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 37 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 39 H 0.08 1.34 7.93 -2.39 -0.02 1.33 16 40 H 0.07 0.72 8.02 -2.39 -0.02 0.70 16 41 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 42 H 0.16 0.42 8.06 -2.91 -0.02 0.39 16 43 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 44 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -81.05 382.62 -0.81 -81.86 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.21 Total: 16.51 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 6.75 Total: -6.70 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -8.58 Total: -100.93 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -81.05 -0.81 -81.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234147054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.178 kcal (2) G-P(sol) polarization free energy of solvation -81.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds