Wall clock time and date at job start Tue Mar 31 2020 14:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36065 * 117.00431 * 2 1 4 4 C 1.38595 * 119.99546 * 0.02562 * 3 2 1 5 5 C 1.38553 * 119.99873 * 179.97438 * 4 3 2 6 6 O 1.36065 * 120.00275 * 179.97438 * 5 4 3 7 7 C 1.42899 * 116.99948 * 0.02562 * 6 5 4 8 8 C 1.39105 * 119.99938 * 359.97264 * 5 4 3 9 9 O 1.36066 * 119.99965 * 179.97438 * 8 5 4 10 10 C 1.42896 * 117.00065 * 174.58796 * 9 8 5 11 11 H 1.09004 * 110.89098 * 327.00659 * 10 9 8 12 12 C 1.55146 * 111.00853 * 203.12015 * 10 9 8 13 13 C 1.54328 * 102.94596 * 206.42828 * 12 10 9 14 14 N 1.47020 * 107.27081 * 22.18900 * 13 12 10 15 15 C 1.36936 * 125.65118 * 181.02394 * 14 13 12 16 16 H 1.08003 * 120.00197 * 186.12990 * 15 14 13 17 17 C 1.38813 * 119.99756 * 6.12433 * 15 14 13 18 18 N 1.31621 * 119.99891 * 7.25284 * 17 15 14 19 19 Si 1.86801 * 119.99680 * 187.52000 * 17 15 14 20 20 H 1.48499 * 109.47187 * 264.74582 * 19 17 15 21 21 H 1.48494 * 109.47227 * 24.74548 * 19 17 15 22 22 H 1.48496 * 109.46862 * 144.74872 * 19 17 15 23 23 C 1.47431 * 108.70292 * 1.29107 * 14 13 12 24 24 C 1.38552 * 119.99785 * 0.25505 * 8 5 4 25 25 C 1.38596 * 120.00105 * 359.51548 * 24 8 5 26 26 O 1.36067 * 120.00442 * 180.25508 * 25 24 8 27 27 C 1.42902 * 116.99599 * 0.23167 * 26 25 24 28 28 H 1.08994 * 109.47231 * 299.99947 * 1 2 3 29 29 H 1.09010 * 109.47379 * 59.99656 * 1 2 3 30 30 H 1.08994 * 109.47613 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00379 * 359.96810 * 4 3 2 32 32 H 1.09001 * 109.47191 * 59.99950 * 7 6 5 33 33 H 1.09003 * 109.47286 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46793 * 300.00003 * 7 6 5 35 35 H 1.09001 * 110.72041 * 88.06525 * 12 10 9 36 36 H 1.08998 * 110.87575 * 324.86368 * 12 10 9 37 37 H 1.08997 * 109.88106 * 262.77750 * 13 12 10 38 38 H 1.08998 * 110.01060 * 141.68379 * 13 12 10 39 39 H 0.96994 * 119.99687 * 180.27094 * 18 17 15 40 40 H 1.08997 * 110.36514 * 94.47686 * 23 14 13 41 41 H 1.08997 * 110.36970 * 216.80276 * 23 14 13 42 42 H 1.08000 * 119.99610 * 179.72712 * 24 8 5 43 43 H 1.09005 * 109.46933 * 300.00122 * 27 26 25 44 44 H 1.08998 * 109.47604 * 59.99409 * 27 26 25 45 45 H 1.08997 * 109.46958 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2123 0.0000 4 6 1.2919 2.3747 0.0005 5 6 1.9210 3.6092 0.0011 6 8 1.1800 4.7503 0.0011 7 6 -0.2412 4.6011 0.0011 8 6 3.3101 3.6819 0.0016 9 8 3.9279 4.8943 0.0016 10 6 5.3517 4.8968 0.1223 11 1 5.6906 4.0681 0.7440 12 6 5.8604 6.2531 0.6781 13 6 7.2942 6.3419 0.1144 14 7 7.3552 5.4644 -1.0637 15 6 8.4619 5.2464 -1.8401 16 1 8.3808 4.6602 -2.7436 17 6 9.6880 5.7788 -1.4659 18 7 9.8197 6.3701 -0.2973 19 14 11.1492 5.6626 -2.6239 20 1 11.9650 4.4723 -2.2736 21 1 10.6642 5.5364 -4.0217 22 1 11.9799 6.8869 -2.4968 23 6 6.0257 4.8631 -1.2746 24 6 4.0647 2.5199 -0.0037 25 6 3.4354 1.2850 0.0006 26 8 4.1764 0.1438 0.0007 27 6 5.5976 0.2931 0.0013 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2135 2.3182 0.0004 32 1 -0.5489 4.0521 0.8911 33 1 -0.7099 5.5851 0.0006 34 1 -0.5488 4.0521 -0.8889 35 1 5.8745 6.2423 1.7680 36 1 5.2495 7.0774 0.3100 37 1 8.0091 6.0049 0.8649 38 1 7.5180 7.3684 -0.1759 39 1 10.6754 6.7455 -0.0375 40 1 5.4518 5.4527 -1.9895 41 1 6.1252 3.8350 -1.6226 42 1 5.1432 2.5764 -0.0077 43 1 5.9056 0.8424 -0.8884 44 1 5.9049 0.8419 0.8915 45 1 6.0663 -0.6909 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234695922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:38 Heat of formation + Delta-G solvation = -100.962821 kcal Electronic energy + Delta-G solvation = -28254.911512 eV Core-core repulsion = 24240.013091 eV Total energy + Delta-G solvation = -4014.898421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.07250 -40.42804 -39.90792 -39.29357 -38.11453 -36.23668 -34.26724 -31.39708 -30.91496 -30.58080 -29.44490 -28.67237 -28.07547 -27.01022 -26.34220 -23.55630 -23.24424 -22.12456 -21.60708 -20.26120 -19.14141 -18.97998 -18.27965 -17.94996 -17.27435 -17.08591 -16.72423 -16.56867 -16.29821 -16.13462 -15.76810 -15.64961 -15.56160 -15.41692 -14.93888 -14.47339 -14.11395 -13.94640 -13.75005 -13.52209 -13.28994 -12.99209 -12.86198 -12.68881 -12.51377 -12.48312 -12.42412 -12.25650 -12.11263 -12.08307 -12.04414 -11.90949 -11.64851 -11.53639 -10.80672 -10.75675 -9.67287 -8.96658 -8.31183 -7.86285 -5.26996 0.07119 0.36915 1.46546 1.48241 1.57766 2.05586 2.22567 2.34292 2.42723 2.49140 2.53342 3.29901 3.56738 3.63331 3.65657 3.87149 3.91234 3.98526 4.05575 4.11070 4.30894 4.33625 4.35019 4.38045 4.42804 4.44694 4.44982 4.54841 4.62513 4.70193 4.72402 4.77401 4.78129 4.85699 4.93959 4.97679 5.11624 5.35372 5.38849 5.54123 5.71313 5.98322 6.12374 6.18852 6.40306 6.67426 7.04579 7.69655 8.34287 9.21420 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.003408 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.832603 B = 8212.908754 C = 9454.566433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.094 3.906 4 C -0.211 4.211 5 C 0.094 3.906 6 O -0.326 6.326 7 C 0.015 3.985 8 C 0.086 3.914 9 O -0.300 6.300 10 C 0.082 3.918 11 H 0.086 0.914 12 C -0.121 4.121 13 C 0.180 3.820 14 N -0.620 5.620 15 C -0.249 4.249 16 H 0.082 0.918 17 C -0.059 4.059 18 N -0.946 5.946 19 Si 0.980 3.020 20 H -0.283 1.283 21 H -0.271 1.271 22 H -0.293 1.293 23 C 0.120 3.880 24 C -0.224 4.224 25 C 0.087 3.913 26 O -0.318 6.318 27 C 0.019 3.981 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.181 0.819 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.004 0.996 39 H 0.250 0.750 40 H 0.025 0.975 41 H 0.046 0.954 42 H 0.148 0.852 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.008 -10.970 3.120 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.048 3.952 4 C -0.230 4.230 5 C 0.048 3.952 6 O -0.240 6.240 7 C -0.080 4.080 8 C 0.041 3.959 9 O -0.213 6.213 10 C 0.025 3.975 11 H 0.104 0.896 12 C -0.159 4.159 13 C 0.055 3.945 14 N -0.348 5.348 15 C -0.377 4.377 16 H 0.099 0.901 17 C -0.253 4.253 18 N -0.594 5.594 19 Si 0.807 3.193 20 H -0.209 1.209 21 H -0.196 1.196 22 H -0.219 1.219 23 C -0.006 4.006 24 C -0.244 4.244 25 C 0.041 3.959 26 O -0.232 6.232 27 C -0.075 4.075 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.198 0.802 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.023 0.977 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.166 0.834 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.820 -10.917 3.102 24.595 hybrid contribution 1.208 0.325 -0.550 1.366 sum -20.612 -10.591 2.553 23.314 Atomic orbital electron populations 1.23409 0.76439 1.05792 1.02376 1.86171 1.23340 1.25084 1.89184 1.17903 0.88593 0.85571 1.03136 1.21074 1.01690 0.88760 1.11490 1.17948 0.87707 0.86442 1.03064 1.86205 1.20847 1.27849 1.89120 1.23406 0.76543 1.05590 1.02418 1.18181 0.89739 0.84940 1.03075 1.86183 1.21052 1.25967 1.88128 1.23554 0.77221 0.99719 0.97032 0.89626 1.22816 0.96214 0.95571 1.01311 1.21047 0.91948 0.92685 0.88856 1.44595 1.06094 1.51886 1.32194 1.19416 0.86372 1.29074 1.02845 0.90062 1.25659 1.00097 1.00915 0.98628 1.70138 1.24355 1.43851 1.21048 0.85056 0.78884 0.76862 0.78469 1.20931 1.19560 1.21923 1.22047 0.86555 0.96761 0.95201 1.21058 1.01019 0.90377 1.11922 1.18045 0.88930 0.85500 1.03415 1.86123 1.20016 1.27847 1.89234 1.23284 0.77228 1.05404 1.01598 0.91376 0.91518 0.86244 0.80237 0.91186 0.86543 0.91404 0.88878 0.90500 0.94031 0.97740 0.94109 0.95731 0.93550 0.83431 0.92928 0.92475 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.32 -7.63 10.28 -80.25 -0.82 -8.45 16 3 C 0.09 2.48 6.70 22.55 0.15 2.63 16 4 C -0.21 -4.76 8.02 22.43 0.18 -4.58 16 5 C 0.09 2.67 6.70 22.55 0.15 2.82 16 6 O -0.33 -8.66 10.28 -80.27 -0.82 -9.49 16 7 C 0.01 0.21 9.81 113.37 1.11 1.32 16 8 C 0.09 2.86 6.69 22.55 0.15 3.01 16 9 O -0.30 -11.05 9.73 -80.29 -0.78 -11.83 16 10 C 0.08 3.12 2.81 32.06 0.09 3.21 16 11 H 0.09 3.12 6.28 -2.38 -0.01 3.11 16 12 C -0.12 -4.72 6.68 31.78 0.21 -4.51 16 13 C 0.18 8.97 5.45 86.73 0.47 9.45 16 14 N -0.62 -32.56 3.39 -691.53 -2.35 -34.91 16 15 C -0.25 -14.03 10.26 84.03 0.86 -13.17 16 16 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 17 C -0.06 -3.36 5.45 84.86 0.46 -2.90 16 18 N -0.95 -56.24 10.46 21.65 0.23 -56.01 16 19 Si 0.98 45.48 29.56 68.60 2.03 47.51 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 C 0.12 5.27 6.84 86.93 0.59 5.86 16 24 C -0.22 -7.06 7.91 22.43 0.18 -6.88 16 25 C 0.09 2.61 6.70 22.55 0.15 2.76 16 26 O -0.32 -9.31 10.28 -80.27 -0.82 -10.14 16 27 C 0.02 0.46 9.81 113.37 1.11 1.57 16 28 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 29 H 0.07 0.63 7.66 -2.38 -0.02 0.61 16 30 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.18 2.56 4.52 -2.91 -0.01 2.54 16 32 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 33 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 0.74 7.66 -2.39 -0.02 0.73 16 35 H 0.09 3.16 8.14 -2.39 -0.02 3.15 16 36 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.04 2.28 6.87 -2.39 -0.02 2.27 16 38 H 0.00 0.24 7.98 -2.39 -0.02 0.22 16 39 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 40 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.05 1.95 7.76 -2.39 -0.02 1.93 16 42 H 0.15 4.70 3.85 -2.91 -0.01 4.69 16 43 H 0.05 1.30 7.65 -2.38 -0.02 1.28 16 44 H 0.06 1.32 7.67 -2.39 -0.02 1.31 16 45 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -72.97 363.16 4.65 -68.32 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.01 Total: 13.13 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 6.99 Total: 1.87 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -2.12 Total: -90.92 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -3.26 Total: -39.91 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -72.97 4.65 -68.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234695922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.643 kcal (2) G-P(sol) polarization free energy of solvation -72.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds