Wall clock time and date at job start Tue Mar 31 2020 14:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36066 * 116.99863 * 2 1 4 4 C 1.38592 * 120.00303 * 0.02562 * 3 2 1 5 5 C 1.38558 * 120.00206 * 179.97438 * 4 3 2 6 6 O 1.36065 * 119.99971 * 180.02562 * 5 4 3 7 7 C 1.42899 * 117.00250 * 359.97438 * 6 5 4 8 8 C 1.39093 * 119.99709 * 359.97438 * 5 4 3 9 9 O 1.36062 * 119.99771 * 179.97438 * 8 5 4 10 10 C 1.42903 * 117.00247 * 185.59060 * 9 8 5 11 11 H 1.09000 * 110.91079 * 38.41216 * 10 9 8 12 12 C 1.55158 * 111.00513 * 162.30913 * 10 9 8 13 13 C 1.54338 * 103.01795 * 153.38536 * 12 10 9 14 14 N 1.47028 * 107.26457 * 338.13878 * 13 12 10 15 15 C 1.36937 * 125.64249 * 178.84916 * 14 13 12 16 16 H 1.08003 * 119.99333 * 179.69927 * 15 14 13 17 17 C 1.38803 * 120.00498 * 359.69516 * 15 14 13 18 18 N 1.31623 * 119.99987 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00152 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47347 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.46840 * 299.99951 * 19 17 15 22 22 H 1.48495 * 109.47055 * 59.99776 * 19 17 15 23 23 C 1.47422 * 108.70372 * 358.59191 * 14 13 12 24 24 C 1.38551 * 120.00270 * 0.25768 * 8 5 4 25 25 C 1.38594 * 120.00045 * 359.46958 * 24 8 5 26 26 O 1.36068 * 120.00589 * 180.27414 * 25 24 8 27 27 C 1.42899 * 116.99393 * 0.27547 * 26 25 24 28 28 H 1.08998 * 109.47353 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47162 * 299.99709 * 1 2 3 30 30 H 1.09000 * 109.47738 * 59.99723 * 1 2 3 31 31 H 1.08001 * 119.99841 * 0.02562 * 4 3 2 32 32 H 1.09006 * 109.47104 * 300.00457 * 7 6 5 33 33 H 1.09004 * 109.46757 * 59.99880 * 7 6 5 34 34 H 1.08993 * 109.47236 * 179.97438 * 7 6 5 35 35 H 1.08993 * 110.72102 * 271.94286 * 12 10 9 36 36 H 1.08997 * 110.71845 * 35.04320 * 12 10 9 37 37 H 1.09006 * 109.98928 * 218.67371 * 13 12 10 38 38 H 1.08991 * 109.78071 * 97.49772 * 13 12 10 39 39 H 0.96997 * 119.99875 * 179.97438 * 18 17 15 40 40 H 1.08994 * 110.36889 * 143.19374 * 23 14 13 41 41 H 1.09002 * 110.36175 * 265.40553 * 23 14 13 42 42 H 1.07999 * 120.00302 * 179.71673 * 24 8 5 43 43 H 1.09004 * 109.46895 * 179.97438 * 27 26 25 44 44 H 1.09004 * 109.47278 * 299.99411 * 27 26 25 45 45 H 1.09005 * 109.47600 * 60.00444 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 1.2919 2.3747 0.0005 5 6 1.9209 3.6093 0.0011 6 8 1.1798 4.7504 0.0021 7 6 -0.2413 4.6011 0.0021 8 6 3.3099 3.6820 0.0016 9 8 3.9276 4.8943 0.0016 10 6 5.3513 4.8971 -0.1219 11 1 5.6827 4.1287 -0.8202 12 6 5.8699 6.2962 -0.5472 13 6 7.3041 6.3233 0.0223 14 7 7.3614 5.3331 1.1077 15 6 8.4678 5.0333 1.8568 16 1 8.4057 4.2903 2.6381 17 6 9.6690 5.6842 1.6119 18 7 9.7446 6.5901 0.6600 19 14 11.1785 5.2747 2.6334 20 1 12.3242 6.1019 2.1773 21 1 10.9005 5.5607 4.0639 22 1 11.5103 3.8363 2.4715 23 6 6.0289 4.7211 1.2600 24 6 4.0645 2.5201 -0.0038 25 6 3.4354 1.2852 0.0014 26 8 4.1764 0.1439 0.0017 27 6 5.5975 0.2934 0.0027 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2133 2.3182 0.0014 32 1 -0.5490 4.0528 -0.8884 33 1 -0.5489 4.0513 0.8916 34 1 -0.7101 5.5851 0.0034 35 1 5.8820 6.3893 -1.6331 36 1 5.2637 7.0843 -0.1007 37 1 7.5312 7.3152 0.4132 38 1 8.0164 6.0585 -0.7590 39 1 10.5840 7.0452 0.4891 40 1 6.1231 3.6631 1.5043 41 1 5.4597 5.2388 2.0321 42 1 5.1430 2.5765 -0.0080 43 1 6.0663 -0.6907 0.0033 44 1 5.9058 0.8424 -0.8871 45 1 5.9047 0.8422 0.8930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234695928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:42 Heat of formation + Delta-G solvation = -79.844069 kcal Electronic energy + Delta-G solvation = -28289.473821 eV Core-core repulsion = 24275.491178 eV Total energy + Delta-G solvation = -4013.982643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97662 -39.19516 -38.82735 -38.24467 -36.50138 -35.06393 -32.29913 -29.90828 -29.85238 -29.12223 -28.32814 -27.36155 -27.19868 -25.96738 -24.49175 -22.32143 -22.13036 -20.34277 -20.08371 -19.12818 -17.96915 -17.43480 -16.90868 -16.78166 -16.27920 -15.97207 -15.61728 -15.26363 -14.96753 -14.77729 -14.69874 -14.47908 -14.38349 -13.81710 -13.46218 -13.27993 -12.63709 -12.58084 -12.46591 -12.04234 -12.00774 -11.73217 -11.60064 -11.59635 -11.37657 -11.32042 -11.18405 -10.98202 -10.80963 -10.41777 -10.32407 -10.15353 -9.90343 -9.77322 -9.61178 -8.64609 -8.56932 -7.19859 -6.90157 -5.75909 -3.10743 1.16123 1.50045 3.15594 3.19606 3.36589 3.38403 3.41526 3.43787 3.47921 3.64212 4.46570 4.62544 4.80091 4.89657 4.95657 4.99778 5.01640 5.14675 5.17040 5.20380 5.27202 5.29700 5.30097 5.32968 5.34727 5.41771 5.52821 5.61484 5.64841 5.70043 5.85532 6.16382 6.20555 6.32230 6.43233 6.48241 6.58079 6.65368 6.95620 7.20209 7.47380 7.49326 7.54809 7.74455 7.83612 8.19426 9.15984 9.75689 10.40525 11.35697 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.003462 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.047948 B = 8086.124765 C = 9409.850919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.305 6.305 3 C 0.089 3.911 4 C -0.223 4.223 5 C 0.093 3.907 6 O -0.300 6.300 7 C 0.027 3.973 8 C 0.123 3.877 9 O -0.290 6.290 10 C 0.064 3.936 11 H 0.077 0.923 12 C -0.133 4.133 13 C 0.179 3.821 14 N -0.602 5.602 15 C -0.232 4.232 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.290 1.290 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.118 3.882 24 C -0.225 4.225 25 C 0.108 3.892 26 O -0.306 6.306 27 C 0.023 3.977 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.144 0.856 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.254 0.746 40 H 0.040 0.960 41 H 0.031 0.969 42 H 0.155 0.845 43 H 0.100 0.900 44 H 0.056 0.944 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.509 -9.801 -3.965 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.218 6.218 3 C 0.044 3.956 4 C -0.243 4.243 5 C 0.047 3.953 6 O -0.214 6.214 7 C -0.068 4.068 8 C 0.076 3.924 9 O -0.203 6.203 10 C 0.007 3.993 11 H 0.095 0.905 12 C -0.172 4.172 13 C 0.054 3.946 14 N -0.330 5.330 15 C -0.360 4.360 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.569 5.569 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.008 4.008 24 C -0.244 4.244 25 C 0.062 3.938 26 O -0.220 6.220 27 C -0.072 4.072 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.172 0.828 43 H 0.119 0.881 44 H 0.074 0.926 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.262 -9.711 -3.946 21.930 hybrid contribution 0.707 -0.153 0.537 0.901 sum -18.555 -9.864 -3.408 21.289 Atomic orbital electron populations 1.23012 0.79177 1.03716 1.00900 1.86182 1.20467 1.25643 1.89552 1.17705 0.88740 0.84556 1.04611 1.20801 1.00092 0.90302 1.13086 1.17799 0.88160 0.85360 1.03935 1.86232 1.18129 1.27739 1.89278 1.23022 0.79348 1.03703 1.00748 1.17880 0.88664 0.85518 1.00312 1.86230 1.22077 1.24656 1.87345 1.23841 0.76430 1.00076 0.98928 0.90545 1.23004 0.99423 0.94188 1.00562 1.21212 0.88809 0.94054 0.90516 1.44339 1.04886 1.44314 1.39468 1.19005 0.86616 1.18676 1.11690 0.90385 1.24810 0.97845 0.98696 0.98871 1.69935 1.25536 1.28429 1.32979 0.86172 0.82282 0.77584 0.79553 1.21531 1.21095 1.21101 1.21976 0.88149 0.96936 0.93770 1.21172 1.01335 0.90137 1.11779 1.17821 0.87966 0.85623 1.02411 1.86144 1.18906 1.27791 1.89128 1.23118 0.78226 1.03898 1.01916 0.88364 0.92989 0.93029 0.83827 0.93079 0.93044 0.88270 0.91331 0.91039 0.93243 0.93017 0.93558 0.94179 0.95110 0.82750 0.88142 0.92552 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -3.96 10.28 -34.63 -0.36 -4.31 16 3 C 0.09 1.26 6.70 -39.14 -0.26 1.00 16 4 C -0.22 -2.82 8.02 -39.33 -0.32 -3.13 16 5 C 0.09 1.39 6.70 -39.15 -0.26 1.13 16 6 O -0.30 -4.28 10.28 -34.61 -0.36 -4.63 16 7 C 0.03 0.24 9.81 101.05 0.99 1.23 16 8 C 0.12 2.06 6.65 -39.15 -0.26 1.80 16 9 O -0.29 -5.37 9.74 -34.60 -0.34 -5.71 16 10 C 0.06 1.21 2.82 -24.58 -0.07 1.14 16 11 H 0.08 1.37 6.61 -51.93 -0.34 1.03 16 12 C -0.13 -2.60 6.68 -24.89 -0.17 -2.76 16 13 C 0.18 4.32 5.38 -3.05 -0.02 4.30 16 14 N -0.60 -15.39 3.39 -170.07 -0.58 -15.97 16 15 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 16 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 17 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 18 N -0.92 -26.70 10.31 55.49 0.57 -26.13 16 19 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 C 0.12 2.54 6.60 -2.53 -0.02 2.52 16 24 C -0.22 -3.54 7.71 -39.33 -0.30 -3.85 16 25 C 0.11 1.65 6.70 -39.14 -0.26 1.39 16 26 O -0.31 -4.56 10.28 -34.64 -0.36 -4.91 16 27 C 0.02 0.28 9.81 101.05 0.99 1.27 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.35 7.66 -51.92 -0.40 -0.05 16 30 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.14 1.33 4.52 -52.49 -0.24 1.10 16 32 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 33 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.05 1.32 7.52 -51.93 -0.39 0.92 16 38 H 0.05 1.35 7.37 -51.93 -0.38 0.97 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.04 0.82 7.24 -51.93 -0.38 0.44 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.16 2.41 3.53 -52.49 -0.19 2.23 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.65 7.65 -51.93 -0.40 0.25 16 45 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -33.04 362.06 -6.57 -39.61 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.38 Total: -0.66 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 0.79 Total: 0.44 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.00 Total: -42.10 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.40 Total: -19.57 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.04 -6.57 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234695928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.231 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds