Wall clock time and date at job start Tue Mar 31 2020 14:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36066 * 116.99863 * 2 1 4 4 C 1.38592 * 120.00303 * 0.02562 * 3 2 1 5 5 C 1.38558 * 120.00206 * 179.97438 * 4 3 2 6 6 O 1.36065 * 119.99971 * 180.02562 * 5 4 3 7 7 C 1.42899 * 117.00250 * 359.97438 * 6 5 4 8 8 C 1.39093 * 119.99709 * 359.97438 * 5 4 3 9 9 O 1.36062 * 119.99771 * 179.97438 * 8 5 4 10 10 C 1.42903 * 117.00247 * 185.59060 * 9 8 5 11 11 H 1.09000 * 110.91079 * 38.41216 * 10 9 8 12 12 C 1.55158 * 111.00513 * 162.30913 * 10 9 8 13 13 C 1.54338 * 103.01795 * 153.38536 * 12 10 9 14 14 N 1.47028 * 107.26457 * 338.13878 * 13 12 10 15 15 C 1.36937 * 125.64249 * 178.84916 * 14 13 12 16 16 H 1.08003 * 119.99333 * 179.69927 * 15 14 13 17 17 C 1.38803 * 120.00498 * 359.69516 * 15 14 13 18 18 N 1.31623 * 119.99987 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00152 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47347 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.46840 * 299.99951 * 19 17 15 22 22 H 1.48495 * 109.47055 * 59.99776 * 19 17 15 23 23 C 1.47422 * 108.70372 * 358.59191 * 14 13 12 24 24 C 1.38551 * 120.00270 * 0.25768 * 8 5 4 25 25 C 1.38594 * 120.00045 * 359.46958 * 24 8 5 26 26 O 1.36068 * 120.00589 * 180.27414 * 25 24 8 27 27 C 1.42899 * 116.99393 * 0.27547 * 26 25 24 28 28 H 1.08998 * 109.47353 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47162 * 299.99709 * 1 2 3 30 30 H 1.09000 * 109.47738 * 59.99723 * 1 2 3 31 31 H 1.08001 * 119.99841 * 0.02562 * 4 3 2 32 32 H 1.09006 * 109.47104 * 300.00457 * 7 6 5 33 33 H 1.09004 * 109.46757 * 59.99880 * 7 6 5 34 34 H 1.08993 * 109.47236 * 179.97438 * 7 6 5 35 35 H 1.08993 * 110.72102 * 271.94286 * 12 10 9 36 36 H 1.08997 * 110.71845 * 35.04320 * 12 10 9 37 37 H 1.09006 * 109.98928 * 218.67371 * 13 12 10 38 38 H 1.08991 * 109.78071 * 97.49772 * 13 12 10 39 39 H 0.96997 * 119.99875 * 179.97438 * 18 17 15 40 40 H 1.08994 * 110.36889 * 143.19374 * 23 14 13 41 41 H 1.09002 * 110.36175 * 265.40553 * 23 14 13 42 42 H 1.07999 * 120.00302 * 179.71673 * 24 8 5 43 43 H 1.09004 * 109.46895 * 179.97438 * 27 26 25 44 44 H 1.09004 * 109.47278 * 299.99411 * 27 26 25 45 45 H 1.09005 * 109.47600 * 60.00444 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 1.2919 2.3747 0.0005 5 6 1.9209 3.6093 0.0011 6 8 1.1798 4.7504 0.0021 7 6 -0.2413 4.6011 0.0021 8 6 3.3099 3.6820 0.0016 9 8 3.9276 4.8943 0.0016 10 6 5.3513 4.8971 -0.1219 11 1 5.6827 4.1287 -0.8202 12 6 5.8699 6.2962 -0.5472 13 6 7.3041 6.3233 0.0223 14 7 7.3614 5.3331 1.1077 15 6 8.4678 5.0333 1.8568 16 1 8.4057 4.2903 2.6381 17 6 9.6690 5.6842 1.6119 18 7 9.7446 6.5901 0.6600 19 14 11.1785 5.2747 2.6334 20 1 12.3242 6.1019 2.1773 21 1 10.9005 5.5607 4.0639 22 1 11.5103 3.8363 2.4715 23 6 6.0289 4.7211 1.2600 24 6 4.0645 2.5201 -0.0038 25 6 3.4354 1.2852 0.0014 26 8 4.1764 0.1439 0.0017 27 6 5.5975 0.2934 0.0027 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2133 2.3182 0.0014 32 1 -0.5490 4.0528 -0.8884 33 1 -0.5489 4.0513 0.8916 34 1 -0.7101 5.5851 0.0034 35 1 5.8820 6.3893 -1.6331 36 1 5.2637 7.0843 -0.1007 37 1 7.5312 7.3152 0.4132 38 1 8.0164 6.0585 -0.7590 39 1 10.5840 7.0452 0.4891 40 1 6.1231 3.6631 1.5043 41 1 5.4597 5.2388 2.0321 42 1 5.1430 2.5765 -0.0080 43 1 6.0663 -0.6907 0.0033 44 1 5.9058 0.8424 -0.8871 45 1 5.9047 0.8422 0.8930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234695928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:41 Heat of formation + Delta-G solvation = -101.104840 kcal Electronic energy + Delta-G solvation = -28290.395758 eV Core-core repulsion = 24275.491178 eV Total energy + Delta-G solvation = -4014.904580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.07655 -40.43800 -39.91137 -39.29216 -38.10730 -36.23768 -34.26665 -31.40866 -30.91776 -30.56310 -29.46553 -28.66189 -28.07265 -27.01406 -26.34315 -23.54067 -23.23544 -22.12915 -21.62255 -20.23240 -19.14075 -18.98058 -18.28566 -17.94243 -17.28179 -17.10288 -16.70911 -16.58910 -16.33707 -16.13745 -15.75188 -15.64514 -15.56153 -15.41329 -14.93361 -14.44523 -14.10441 -13.95103 -13.71470 -13.53116 -13.25237 -12.97099 -12.90261 -12.67191 -12.51425 -12.47742 -12.42300 -12.25869 -12.12015 -12.09293 -12.07923 -11.90442 -11.66322 -11.53041 -10.80964 -10.72814 -9.67131 -8.97985 -8.31291 -7.87700 -5.25535 0.07349 0.36999 1.46647 1.49951 1.56285 2.05609 2.22661 2.34463 2.42792 2.49251 2.53479 3.30982 3.55988 3.63859 3.65818 3.87753 3.91241 3.99193 4.05377 4.10961 4.30714 4.33593 4.34734 4.37591 4.42757 4.44683 4.44930 4.54618 4.61704 4.70382 4.72328 4.77300 4.78117 4.85663 4.93808 4.97995 5.11808 5.35692 5.40611 5.57578 5.68811 5.98306 6.11496 6.18058 6.40255 6.67441 7.05266 7.69856 8.34241 9.22475 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.003462 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.047948 B = 8086.124765 C = 9409.850919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.094 3.906 4 C -0.211 4.211 5 C 0.094 3.906 6 O -0.326 6.326 7 C 0.015 3.985 8 C 0.086 3.914 9 O -0.300 6.300 10 C 0.083 3.917 11 H 0.086 0.914 12 C -0.121 4.121 13 C 0.188 3.812 14 N -0.621 5.621 15 C -0.249 4.249 16 H 0.083 0.917 17 C -0.060 4.060 18 N -0.949 5.949 19 Si 0.981 3.019 20 H -0.293 1.293 21 H -0.279 1.279 22 H -0.274 1.274 23 C 0.119 3.881 24 C -0.224 4.224 25 C 0.087 3.913 26 O -0.318 6.318 27 C 0.019 3.981 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.181 0.819 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.016 0.984 38 H 0.026 0.974 39 H 0.250 0.750 40 H 0.048 0.952 41 H 0.021 0.979 42 H 0.149 0.851 43 H 0.126 0.874 44 H 0.057 0.943 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.781 -11.317 -3.975 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.048 3.952 4 C -0.230 4.230 5 C 0.048 3.952 6 O -0.240 6.240 7 C -0.080 4.080 8 C 0.041 3.959 9 O -0.214 6.214 10 C 0.026 3.974 11 H 0.104 0.896 12 C -0.159 4.159 13 C 0.063 3.937 14 N -0.349 5.349 15 C -0.378 4.378 16 H 0.101 0.899 17 C -0.254 4.254 18 N -0.597 5.597 19 Si 0.809 3.191 20 H -0.219 1.219 21 H -0.205 1.205 22 H -0.199 1.199 23 C -0.007 4.007 24 C -0.243 4.243 25 C 0.041 3.959 26 O -0.232 6.232 27 C -0.075 4.075 28 H 0.138 0.862 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.198 0.802 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.034 0.966 38 H 0.044 0.956 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.166 0.834 43 H 0.144 0.856 44 H 0.076 0.924 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.589 -11.253 -3.951 24.664 hybrid contribution 1.208 0.227 0.560 1.351 sum -20.381 -11.027 -3.390 23.419 Atomic orbital electron populations 1.23409 0.76446 1.05789 1.02374 1.86172 1.23336 1.25080 1.89184 1.17907 0.88598 0.85568 1.03129 1.21074 1.01689 0.88762 1.11509 1.17948 0.87714 0.86442 1.03069 1.86204 1.20846 1.27855 1.89123 1.23405 0.76545 1.05589 1.02416 1.18172 0.89724 0.84947 1.03101 1.86185 1.21042 1.25990 1.88155 1.23479 0.77212 0.99646 0.97106 0.89647 1.22833 0.96245 0.94931 1.01906 1.20949 0.91277 0.92006 0.89506 1.44605 1.05891 1.44915 1.39520 1.19402 0.87620 1.18692 1.12058 0.89907 1.25664 1.00705 0.98796 1.00189 1.70148 1.25796 1.29373 1.34417 0.85121 0.78358 0.77637 0.78007 1.21881 1.20479 1.19927 1.22033 0.86513 0.96816 0.95316 1.21081 1.01016 0.90357 1.11850 1.18051 0.88928 0.85513 1.03429 1.86123 1.20016 1.27847 1.89238 1.23286 0.77230 1.05405 1.01595 0.86245 0.91527 0.91372 0.80244 0.91173 0.91424 0.86542 0.88736 0.90574 0.96587 0.95568 0.94115 0.93375 0.96097 0.83408 0.85625 0.92429 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.32 -7.63 10.28 -80.27 -0.82 -8.46 16 3 C 0.09 2.48 6.70 22.55 0.15 2.63 16 4 C -0.21 -4.77 8.02 22.43 0.18 -4.59 16 5 C 0.09 2.67 6.70 22.55 0.15 2.82 16 6 O -0.33 -8.68 10.28 -80.27 -0.82 -9.51 16 7 C 0.01 0.21 9.81 113.37 1.11 1.32 16 8 C 0.09 2.86 6.65 22.55 0.15 3.01 16 9 O -0.30 -11.06 9.74 -80.24 -0.78 -11.84 16 10 C 0.08 3.14 2.82 31.99 0.09 3.23 16 11 H 0.09 3.08 6.61 -2.39 -0.02 3.06 16 12 C -0.12 -4.73 6.68 31.79 0.21 -4.52 16 13 C 0.19 9.39 5.38 86.73 0.47 9.86 16 14 N -0.62 -32.63 3.39 -691.98 -2.35 -34.98 16 15 C -0.25 -14.05 10.28 84.03 0.86 -13.19 16 16 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 17 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 18 N -0.95 -56.67 10.31 21.65 0.22 -56.45 16 19 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.12 5.20 6.60 86.85 0.57 5.78 16 24 C -0.22 -7.04 7.71 22.43 0.17 -6.86 16 25 C 0.09 2.60 6.70 22.55 0.15 2.76 16 26 O -0.32 -9.31 10.28 -80.28 -0.83 -10.14 16 27 C 0.02 0.46 9.81 113.37 1.11 1.57 16 28 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.63 7.66 -2.38 -0.02 0.61 16 30 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 31 H 0.18 2.57 4.52 -2.91 -0.01 2.55 16 32 H 0.07 0.74 7.66 -2.38 -0.02 0.72 16 33 H 0.07 0.75 7.66 -2.38 -0.02 0.73 16 34 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.02 0.89 7.52 -2.38 -0.02 0.87 16 38 H 0.03 1.42 7.37 -2.39 -0.02 1.41 16 39 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.05 2.00 7.24 -2.39 -0.02 1.98 16 41 H 0.02 0.96 8.14 -2.39 -0.02 0.95 16 42 H 0.15 4.70 3.53 -2.91 -0.01 4.69 16 43 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.06 1.33 7.65 -2.39 -0.02 1.31 16 45 H 0.05 1.29 7.67 -2.38 -0.02 1.27 16 Total: -1.00 -73.19 362.06 4.62 -68.57 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.01 Total: 13.19 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 6.96 Total: 2.15 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -2.13 Total: -91.43 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -3.26 Total: -39.95 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.19 4.62 -68.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234695928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.535 kcal (2) G-P(sol) polarization free energy of solvation -73.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds