Wall clock time and date at job start Tue Mar 31 2020 14:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35444 * 126.77837 * 2 1 4 4 C 1.41371 * 103.98882 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.80186 * 179.97438 * 4 3 2 6 6 O 1.42896 * 109.47354 * 0.02562 * 5 4 3 7 7 C 1.42897 * 114.00235 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47247 * 179.97438 * 7 6 5 9 9 O 1.21277 * 119.99827 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00221 * 355.01577 * 10 8 7 12 12 C 1.46503 * 120.00194 * 175.01678 * 10 8 7 13 13 C 1.52993 * 109.47367 * 94.72272 * 12 10 8 14 14 H 1.09006 * 112.73502 * 316.18821 * 13 12 10 15 15 C 1.53488 * 113.46903 * 86.92849 * 13 12 10 16 16 C 1.53616 * 83.30595 * 140.83293 * 15 13 12 17 17 N 1.47065 * 113.46972 * 185.44542 * 13 12 10 18 18 C 1.36934 * 136.05878 * 38.06281 * 17 13 12 19 19 H 1.08002 * 120.00140 * 354.78734 * 18 17 13 20 20 C 1.38816 * 119.99763 * 174.79056 * 18 17 13 21 21 N 1.31612 * 120.00291 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99588 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47047 * 90.00154 * 22 20 18 24 24 H 1.48496 * 109.46746 * 209.99788 * 22 20 18 25 25 H 1.48498 * 109.47077 * 329.99974 * 22 20 18 26 26 N 1.30174 * 106.39674 * 0.25555 * 4 3 2 27 27 O 1.20924 * 111.60085 * 359.54228 * 26 4 3 28 28 H 1.09002 * 109.47189 * 90.00818 * 1 2 3 29 29 H 1.09008 * 109.47171 * 210.00446 * 1 2 3 30 30 H 1.08996 * 109.47542 * 330.00442 * 1 2 3 31 31 H 1.08004 * 128.00504 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47089 * 120.00094 * 5 4 3 33 33 H 1.09000 * 109.46858 * 239.99490 * 5 4 3 34 34 H 1.09005 * 109.46864 * 299.99840 * 7 6 5 35 35 H 1.09000 * 109.47451 * 59.99024 * 7 6 5 36 36 H 1.09002 * 109.47261 * 89.99810 * 11 10 8 37 37 H 1.08995 * 109.47557 * 209.99870 * 11 10 8 38 38 H 1.08999 * 109.47263 * 330.00348 * 11 10 8 39 39 H 1.09000 * 109.47640 * 214.72678 * 12 10 8 40 40 H 1.09005 * 109.46966 * 334.72032 * 12 10 8 41 41 H 1.09000 * 114.21254 * 254.44013 * 15 13 12 42 42 H 1.09001 * 114.20978 * 27.26582 * 15 13 12 43 43 H 1.09003 * 113.50339 * 219.18502 * 16 15 13 44 44 H 1.09003 * 113.46649 * 88.77534 * 16 15 13 45 45 H 0.96998 * 120.00299 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5373 -0.0006 5 6 4.9210 1.3001 -0.0014 6 8 4.6500 2.7031 -0.0009 7 6 5.8214 3.5214 -0.0021 8 6 5.4196 4.9738 -0.0021 9 8 4.2456 5.2782 -0.0015 10 7 6.3648 5.9345 -0.0026 11 6 7.7796 5.5703 0.1069 12 6 5.9776 7.3431 -0.1128 13 6 5.8688 7.9531 1.2861 14 1 5.3529 7.3011 1.9910 15 6 7.2002 8.4988 1.8202 16 6 6.3119 9.6258 2.3684 17 7 5.3610 9.3333 1.2854 18 6 4.4182 10.0367 0.5843 19 1 3.9032 9.5724 -0.2438 20 6 4.1244 11.3465 0.9380 21 7 4.7516 11.9121 1.9474 22 14 2.8388 12.3062 -0.0189 23 1 1.5052 12.1019 0.6016 24 1 3.1800 13.7512 0.0058 25 1 2.8092 11.8285 -1.4246 26 7 3.4764 -0.7564 -0.0065 27 8 2.3095 -1.0736 -0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 2.0345 2.1270 -0.0004 32 1 5.4949 1.0409 0.8883 33 1 5.4940 1.0406 -0.8916 34 1 6.4145 3.3081 0.8872 35 1 6.4126 3.3083 -0.8928 36 1 8.1936 5.4172 -0.8897 37 1 8.3234 6.3715 0.6071 38 1 7.8744 4.6509 0.6848 39 1 6.7304 7.8832 -0.6871 40 1 5.0141 7.4167 -0.6172 41 1 7.6615 7.8786 2.5888 42 1 7.8968 8.8162 1.0442 43 1 6.7663 10.6137 2.2920 44 1 5.9144 9.4207 3.3625 45 1 4.5460 12.8272 2.1947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235745092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:25 Heat of formation + Delta-G solvation = 53.386197 kcal Electronic energy + Delta-G solvation = -26834.568958 eV Core-core repulsion = 22858.656364 eV Total energy + Delta-G solvation = -3975.912594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.15807 -39.96455 -38.37109 -37.63589 -35.21976 -34.47751 -33.58872 -32.16848 -29.93109 -28.22981 -28.00594 -27.89446 -26.88552 -25.72543 -23.43701 -23.15779 -22.17625 -20.65036 -19.33609 -19.05192 -17.95710 -17.73882 -17.02844 -16.86739 -16.64970 -16.45407 -15.64292 -15.18398 -15.01916 -14.63901 -14.20558 -13.87834 -13.81338 -13.75107 -13.55631 -13.18777 -13.09144 -12.67759 -12.65842 -12.60117 -12.47645 -12.07328 -11.81656 -11.46582 -11.41565 -11.12767 -10.90881 -10.73525 -10.60533 -10.42227 -9.91449 -9.84043 -9.82517 -9.65515 -9.52310 -9.38004 -8.76541 -8.33363 -6.84387 -5.73644 -3.05344 1.21104 1.98550 2.52714 2.70428 2.87237 3.41083 3.42993 3.48372 3.49728 4.10452 4.33793 4.50384 4.54746 4.72877 4.76789 4.84125 4.90562 4.98619 5.06612 5.08483 5.09462 5.16274 5.21325 5.32534 5.45321 5.48925 5.50789 5.57155 5.66324 5.79463 5.90100 5.96832 6.16198 6.29228 6.42506 6.47066 6.67340 6.68786 6.87654 7.25894 7.41636 7.50495 7.59634 7.98772 8.01770 8.30964 9.08382 9.74491 10.68143 11.44611 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.002458 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.104960 B =11387.168830 C =12803.431661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.204 4.204 4 C 0.018 3.982 5 C 0.144 3.856 6 O -0.356 6.356 7 C 0.049 3.951 8 C 0.509 3.491 9 O -0.512 6.512 10 N -0.609 5.609 11 C 0.075 3.925 12 C 0.117 3.883 13 C 0.133 3.867 14 H 0.043 0.957 15 C -0.170 4.170 16 C 0.158 3.842 17 N -0.600 5.600 18 C -0.215 4.215 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 N -0.363 5.363 27 O 0.099 5.901 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.179 0.821 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.025 0.975 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.391 -23.778 -3.901 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.225 4.225 4 C -0.140 4.140 5 C 0.066 3.934 6 O -0.273 6.273 7 C -0.031 4.031 8 C 0.295 3.705 9 O -0.386 6.386 10 N -0.345 5.345 11 C -0.069 4.069 12 C -0.006 4.006 13 C 0.025 3.975 14 H 0.061 0.939 15 C -0.208 4.208 16 C 0.032 3.968 17 N -0.326 5.326 18 C -0.343 4.343 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.205 1.205 26 N -0.069 5.069 27 O 0.032 5.968 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.196 0.804 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.207 -24.231 -4.005 24.768 hybrid contribution -0.710 1.235 -0.273 1.450 sum 2.497 -22.996 -4.278 23.523 Atomic orbital electron populations 1.20347 0.83777 1.04756 1.04184 1.24559 0.96485 0.85892 1.03302 1.22496 0.90648 1.01619 1.07745 1.23105 0.97175 0.90119 1.03597 1.20301 0.90440 0.80676 1.01962 1.87971 1.29316 1.14480 1.95531 1.22305 0.88328 0.89889 1.02591 1.20065 0.86212 0.86613 0.77657 1.90769 1.17553 1.82812 1.47422 1.47807 1.06302 1.07177 1.73234 1.21854 0.81728 1.01809 1.01475 1.21901 1.01906 0.77427 0.99359 1.22410 0.92406 0.89049 0.93663 0.93946 1.23790 0.96300 1.00354 1.00361 1.21952 0.87471 0.96556 0.90795 1.45703 1.43439 1.04010 1.39479 1.18943 1.13145 0.93656 1.08508 0.90108 1.24804 1.00017 0.97326 0.98290 1.69839 1.44185 1.13533 1.29259 0.86133 0.81331 0.79178 0.79250 1.21577 1.21690 1.20535 1.73763 0.97449 1.15268 1.20436 1.84790 1.11029 1.33221 1.67792 0.89369 0.89886 0.88769 0.80355 0.90689 0.90733 0.90035 0.90059 0.92632 0.90069 0.91586 0.90334 0.89729 0.92770 0.90527 0.91574 0.95764 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.45 36.01 0.38 -0.02 16 2 C -0.04 -0.37 7.49 -35.30 -0.26 -0.64 16 3 C -0.20 -2.33 10.45 -39.39 -0.41 -2.74 16 4 C 0.02 0.22 7.28 -82.10 -0.60 -0.38 16 5 C 0.14 1.42 6.56 36.01 0.24 1.66 16 6 O -0.36 -4.51 9.37 -55.14 -0.52 -5.02 16 7 C 0.05 0.51 5.09 36.00 0.18 0.69 16 8 C 0.51 7.82 7.74 -10.99 -0.09 7.73 16 9 O -0.51 -10.58 16.05 -14.35 -0.23 -10.81 16 10 N -0.61 -8.55 2.87 -181.58 -0.52 -9.07 16 11 C 0.07 0.66 10.23 59.85 0.61 1.27 16 12 C 0.12 2.10 5.37 -4.04 -0.02 2.08 16 13 C 0.13 2.75 4.31 -72.41 -0.31 2.44 16 14 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.17 -3.07 7.13 -26.16 -0.19 -3.26 16 16 C 0.16 3.75 7.28 -8.45 -0.06 3.69 16 17 N -0.60 -15.63 3.65 -176.81 -0.64 -16.28 16 18 C -0.22 -6.16 10.55 -15.06 -0.16 -6.32 16 19 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.84 11.64 55.49 0.65 -27.20 16 22 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 N -0.36 -4.47 12.07 33.42 0.40 -4.06 16 27 O 0.10 1.10 11.20 17.18 0.19 1.29 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.18 2.09 8.05 -52.48 -0.42 1.67 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.63 7.25 -51.93 -0.38 0.25 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.73 7.15 -51.93 -0.37 0.36 16 38 H 0.07 0.42 6.48 -51.93 -0.34 0.08 16 39 H 0.08 1.32 7.84 -51.93 -0.41 0.91 16 40 H 0.08 1.79 7.36 -51.93 -0.38 1.41 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.30 7.93 -51.93 -0.41 0.89 16 43 H 0.07 1.71 7.37 -51.93 -0.38 1.33 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -36.93 380.13 -7.62 -44.55 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.86 Total: -2.67 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.79 Total: 5.89 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.12 Total: -56.61 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.55 Total: -14.54 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.93 -7.62 -44.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235745092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.933 kcal (2) G-P(sol) polarization free energy of solvation -36.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds