Wall clock time and date at job start Tue Mar 31 2020 14:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35444 * 126.77837 * 2 1 4 4 C 1.41371 * 103.98882 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.80186 * 179.97438 * 4 3 2 6 6 O 1.42896 * 109.47354 * 0.02562 * 5 4 3 7 7 C 1.42897 * 114.00235 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47247 * 179.97438 * 7 6 5 9 9 O 1.21277 * 119.99827 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00221 * 355.01577 * 10 8 7 12 12 C 1.46503 * 120.00194 * 175.01678 * 10 8 7 13 13 C 1.52993 * 109.47367 * 94.72272 * 12 10 8 14 14 H 1.09006 * 112.73502 * 316.18821 * 13 12 10 15 15 C 1.53488 * 113.46903 * 86.92849 * 13 12 10 16 16 C 1.53616 * 83.30595 * 140.83293 * 15 13 12 17 17 N 1.47065 * 113.46972 * 185.44542 * 13 12 10 18 18 C 1.36934 * 136.05878 * 38.06281 * 17 13 12 19 19 H 1.08002 * 120.00140 * 354.78734 * 18 17 13 20 20 C 1.38816 * 119.99763 * 174.79056 * 18 17 13 21 21 N 1.31612 * 120.00291 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99588 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47047 * 90.00154 * 22 20 18 24 24 H 1.48496 * 109.46746 * 209.99788 * 22 20 18 25 25 H 1.48498 * 109.47077 * 329.99974 * 22 20 18 26 26 N 1.30174 * 106.39674 * 0.25555 * 4 3 2 27 27 O 1.20924 * 111.60085 * 359.54228 * 26 4 3 28 28 H 1.09002 * 109.47189 * 90.00818 * 1 2 3 29 29 H 1.09008 * 109.47171 * 210.00446 * 1 2 3 30 30 H 1.08996 * 109.47542 * 330.00442 * 1 2 3 31 31 H 1.08004 * 128.00504 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47089 * 120.00094 * 5 4 3 33 33 H 1.09000 * 109.46858 * 239.99490 * 5 4 3 34 34 H 1.09005 * 109.46864 * 299.99840 * 7 6 5 35 35 H 1.09000 * 109.47451 * 59.99024 * 7 6 5 36 36 H 1.09002 * 109.47261 * 89.99810 * 11 10 8 37 37 H 1.08995 * 109.47557 * 209.99870 * 11 10 8 38 38 H 1.08999 * 109.47263 * 330.00348 * 11 10 8 39 39 H 1.09000 * 109.47640 * 214.72678 * 12 10 8 40 40 H 1.09005 * 109.46966 * 334.72032 * 12 10 8 41 41 H 1.09000 * 114.21254 * 254.44013 * 15 13 12 42 42 H 1.09001 * 114.20978 * 27.26582 * 15 13 12 43 43 H 1.09003 * 113.50339 * 219.18502 * 16 15 13 44 44 H 1.09003 * 113.46649 * 88.77534 * 16 15 13 45 45 H 0.96998 * 120.00299 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5373 -0.0006 5 6 4.9210 1.3001 -0.0014 6 8 4.6500 2.7031 -0.0009 7 6 5.8214 3.5214 -0.0021 8 6 5.4196 4.9738 -0.0021 9 8 4.2456 5.2782 -0.0015 10 7 6.3648 5.9345 -0.0026 11 6 7.7796 5.5703 0.1069 12 6 5.9776 7.3431 -0.1128 13 6 5.8688 7.9531 1.2861 14 1 5.3529 7.3011 1.9910 15 6 7.2002 8.4988 1.8202 16 6 6.3119 9.6258 2.3684 17 7 5.3610 9.3333 1.2854 18 6 4.4182 10.0367 0.5843 19 1 3.9032 9.5724 -0.2438 20 6 4.1244 11.3465 0.9380 21 7 4.7516 11.9121 1.9474 22 14 2.8388 12.3062 -0.0189 23 1 1.5052 12.1019 0.6016 24 1 3.1800 13.7512 0.0058 25 1 2.8092 11.8285 -1.4246 26 7 3.4764 -0.7564 -0.0065 27 8 2.3095 -1.0736 -0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 2.0345 2.1270 -0.0004 32 1 5.4949 1.0409 0.8883 33 1 5.4940 1.0406 -0.8916 34 1 6.4145 3.3081 0.8872 35 1 6.4126 3.3083 -0.8928 36 1 8.1936 5.4172 -0.8897 37 1 8.3234 6.3715 0.6071 38 1 7.8744 4.6509 0.6848 39 1 6.7304 7.8832 -0.6871 40 1 5.0141 7.4167 -0.6172 41 1 7.6615 7.8786 2.5888 42 1 7.8968 8.8162 1.0442 43 1 6.7663 10.6137 2.2920 44 1 5.9144 9.4207 3.3625 45 1 4.5460 12.8272 2.1947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235745092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:24 Heat of formation + Delta-G solvation = 28.161534 kcal Electronic energy + Delta-G solvation = -26835.662782 eV Core-core repulsion = 22858.656364 eV Total energy + Delta-G solvation = -3977.006418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.98194 -41.15843 -39.82774 -38.76112 -36.46141 -35.29599 -34.30998 -34.28332 -31.08703 -29.92188 -29.20703 -28.62833 -27.72698 -26.80536 -25.43109 -24.04662 -23.66948 -21.44367 -21.08661 -20.23440 -18.79289 -18.75533 -18.55334 -17.94327 -17.67425 -17.48422 -17.05193 -16.52593 -16.23572 -15.94439 -15.66606 -15.28037 -14.96552 -14.56516 -14.39782 -14.09595 -14.06475 -13.96312 -13.66388 -13.52812 -13.42172 -13.27471 -13.15010 -12.97661 -12.84481 -12.63471 -12.49821 -12.24558 -12.18583 -11.83954 -11.61568 -11.42714 -11.22573 -10.88268 -10.76777 -10.66627 -10.29220 -9.61584 -8.92636 -7.93933 -5.26410 0.42142 1.14987 1.41544 1.44460 1.52655 1.57869 1.60194 2.13495 2.42199 2.54227 3.27120 3.32877 3.48002 3.55088 3.68777 3.82579 4.03765 4.08607 4.18926 4.23284 4.23840 4.30472 4.34281 4.40436 4.44489 4.46433 4.53363 4.69519 4.71938 4.85660 4.86857 4.94553 4.95909 4.98414 5.03037 5.10548 5.20666 5.22197 5.44477 5.53185 5.72884 5.89771 5.93903 6.44504 6.90422 7.17200 7.18919 7.58089 8.59589 9.24301 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.002458 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.104960 B =11387.168830 C =12803.431661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.022 4.022 3 C -0.237 4.237 4 C 0.007 3.993 5 C 0.144 3.856 6 O -0.390 6.390 7 C 0.056 3.944 8 C 0.498 3.502 9 O -0.582 6.582 10 N -0.605 5.605 11 C 0.064 3.936 12 C 0.131 3.869 13 C 0.133 3.867 14 H 0.022 0.978 15 C -0.125 4.125 16 C 0.147 3.853 17 N -0.633 5.633 18 C -0.225 4.225 19 H 0.076 0.924 20 C -0.066 4.066 21 N -0.953 5.953 22 Si 0.975 3.025 23 H -0.290 1.290 24 H -0.288 1.288 25 H -0.268 1.268 26 N -0.382 5.382 27 O 0.091 5.909 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.167 0.833 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.042 0.958 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.038 0.962 44 H 0.008 0.992 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.261 -25.937 -4.658 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.259 4.259 4 C -0.151 4.151 5 C 0.067 3.933 6 O -0.309 6.309 7 C -0.022 4.022 8 C 0.286 3.714 9 O -0.461 6.461 10 N -0.339 5.339 11 C -0.077 4.077 12 C 0.007 3.993 13 C 0.025 3.975 14 H 0.040 0.960 15 C -0.163 4.163 16 C 0.021 3.979 17 N -0.359 5.359 18 C -0.353 4.353 19 H 0.093 0.907 20 C -0.259 4.259 21 N -0.602 5.602 22 Si 0.803 3.197 23 H -0.217 1.217 24 H -0.214 1.214 25 H -0.193 1.193 26 N -0.090 5.090 27 O 0.026 5.974 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.185 0.815 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.060 0.940 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.057 0.943 44 H 0.026 0.974 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.137 -26.450 -4.771 27.364 hybrid contribution -1.309 1.845 -0.008 2.262 sum 3.828 -24.605 -4.779 25.356 Atomic orbital electron populations 1.20582 0.80878 1.06044 1.05590 1.25187 0.97905 0.84887 1.00592 1.22539 0.91461 1.01666 1.10194 1.23554 0.98276 0.90272 1.02961 1.20497 0.89745 0.79102 1.03956 1.87933 1.31038 1.15956 1.95933 1.22411 0.87966 0.85829 1.06040 1.21103 0.85362 0.88908 0.76002 1.90740 1.20575 1.84114 1.50664 1.47861 1.08637 1.05148 1.72236 1.22272 0.78079 1.03479 1.03864 1.21439 1.00481 0.80321 0.97059 1.22494 0.93226 0.86707 0.95036 0.96036 1.23548 0.94737 0.97072 1.00921 1.22015 0.88582 0.97364 0.89928 1.46121 1.43300 1.06671 1.39798 1.19221 1.13335 0.94176 1.08596 0.90662 1.25622 1.02275 0.98386 0.99629 1.70009 1.45711 1.13529 1.30905 0.85123 0.78464 0.77621 0.78453 1.21729 1.21418 1.19256 1.73741 0.98034 1.15440 1.21825 1.84756 1.11041 1.33662 1.67927 0.87724 0.87960 0.88058 0.81517 0.88594 0.88500 0.86359 0.86229 0.90055 0.89658 0.88190 0.88725 0.93969 0.88605 0.88435 0.94343 0.97444 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.45 71.24 0.74 0.05 16 2 C -0.02 -0.41 7.49 25.04 0.19 -0.23 16 3 C -0.24 -5.52 10.45 22.40 0.23 -5.28 16 4 C 0.01 0.17 7.28 43.58 0.32 0.49 16 5 C 0.14 2.55 6.56 71.24 0.47 3.01 16 6 O -0.39 -9.36 9.37 -129.94 -1.22 -10.58 16 7 C 0.06 1.00 5.09 71.23 0.36 1.36 16 8 C 0.50 14.78 7.74 87.66 0.68 15.46 16 9 O -0.58 -25.05 16.05 16.02 0.26 -24.79 16 10 N -0.60 -15.69 2.87 -846.77 -2.43 -18.12 16 11 C 0.06 0.82 10.23 127.77 1.31 2.13 16 12 C 0.13 4.67 5.37 86.38 0.46 5.14 16 13 C 0.13 5.48 4.31 41.78 0.18 5.66 16 14 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 15 C -0.13 -4.24 7.13 30.97 0.22 -4.02 16 16 C 0.15 7.09 7.28 83.22 0.61 7.69 16 17 N -0.63 -33.79 3.65 -713.30 -2.60 -36.39 16 18 C -0.22 -13.30 10.55 84.04 0.89 -12.41 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 21 N -0.95 -59.40 11.64 21.65 0.25 -59.14 16 22 Si 0.98 47.78 29.55 68.60 2.03 49.81 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 26 N -0.38 -9.16 12.07 -49.57 -0.60 -9.75 16 27 O 0.09 1.97 11.20 71.64 0.80 2.77 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.17 4.21 8.05 -2.91 -0.02 4.18 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.12 1.23 7.25 -2.38 -0.02 1.21 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 1.08 7.15 -2.39 -0.02 1.06 16 38 H 0.10 0.66 6.48 -2.39 -0.02 0.64 16 39 H 0.09 3.03 7.84 -2.39 -0.02 3.01 16 40 H 0.04 1.86 7.36 -2.38 -0.02 1.84 16 41 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.10 2.96 7.93 -2.39 -0.02 2.94 16 43 H 0.04 2.04 7.37 -2.39 -0.02 2.02 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -87.74 380.13 4.60 -83.14 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 0.99 Total: 7.46 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 7.12 Total: 15.59 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -5.38 Total: -123.41 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.16 Total: -32.60 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -87.74 4.60 -83.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235745092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.304 kcal (2) G-P(sol) polarization free energy of solvation -87.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds