Wall clock time and date at job start Tue Mar 31 2020 14:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35450 * 126.77595 * 2 1 4 4 C 1.41380 * 103.98697 * 180.09638 * 3 2 1 5 5 C 1.50697 * 126.80388 * 179.88621 * 4 3 2 6 6 O 1.42898 * 109.47295 * 359.71459 * 5 4 3 7 7 C 1.42897 * 114.00102 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.47056 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00357 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00313 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99822 * 354.98330 * 10 8 7 12 12 C 1.46505 * 120.00486 * 174.98294 * 10 8 7 13 13 C 1.53004 * 109.46861 * 275.14383 * 12 10 8 14 14 H 1.09003 * 112.73536 * 44.02400 * 13 12 10 15 15 C 1.53493 * 113.51947 * 273.22775 * 13 12 10 16 16 C 1.53758 * 83.25671 * 218.97372 * 15 13 12 17 17 N 1.47059 * 113.46314 * 174.76579 * 13 12 10 18 18 C 1.36942 * 136.06138 * 321.92165 * 17 13 12 19 19 H 1.07999 * 119.99318 * 355.14402 * 18 17 13 20 20 C 1.38804 * 119.99865 * 174.86605 * 18 17 13 21 21 N 1.31619 * 120.00408 * 0.28244 * 20 18 17 22 22 Si 1.86804 * 119.99785 * 180.27375 * 20 18 17 23 23 H 1.48502 * 109.47044 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46705 * 120.00229 * 22 20 18 25 25 H 1.48496 * 109.47289 * 240.00044 * 22 20 18 26 26 N 1.30181 * 106.39050 * 359.63262 * 4 3 2 27 27 O 1.20917 * 111.60649 * 0.23401 * 26 4 3 28 28 H 1.08998 * 109.47440 * 180.29800 * 1 2 3 29 29 H 1.09001 * 109.47294 * 300.29784 * 1 2 3 30 30 H 1.09003 * 109.47247 * 60.29839 * 1 2 3 31 31 H 1.07999 * 128.00607 * 359.97011 * 3 2 1 32 32 H 1.08997 * 109.47142 * 239.71088 * 5 4 3 33 33 H 1.09001 * 109.46932 * 119.71405 * 5 4 3 34 34 H 1.09005 * 109.46632 * 60.00339 * 7 6 5 35 35 H 1.08998 * 109.47257 * 300.00627 * 7 6 5 36 36 H 1.09003 * 109.46860 * 270.00256 * 11 10 8 37 37 H 1.09001 * 109.46610 * 29.99642 * 11 10 8 38 38 H 1.08994 * 109.46947 * 149.99822 * 11 10 8 39 39 H 1.08996 * 109.47035 * 155.14315 * 12 10 8 40 40 H 1.08998 * 109.46788 * 35.14173 * 12 10 8 41 41 H 1.08995 * 114.20963 * 332.73481 * 15 13 12 42 42 H 1.08999 * 114.20401 * 105.36297 * 15 13 12 43 43 H 1.08991 * 113.47040 * 271.50503 * 16 15 13 44 44 H 1.09003 * 113.55062 * 140.98544 * 16 15 13 45 45 H 0.97000 * 120.00478 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5373 -0.0023 5 6 4.9210 1.3001 -0.0057 6 8 4.6500 2.7031 -0.0130 7 6 5.8214 3.5214 -0.0161 8 6 5.4196 4.9737 -0.0244 9 8 4.2456 5.2782 -0.0269 10 7 6.3648 5.9345 -0.0291 11 6 7.7795 5.5709 0.0848 12 6 5.9777 7.3425 -0.1481 13 6 5.8091 7.7018 -1.6257 14 1 5.2634 6.9415 -2.1845 15 6 7.1155 8.1384 -2.3029 16 6 6.2002 9.1561 -3.0034 17 7 5.3018 9.0650 -1.8425 18 6 4.3897 9.8861 -1.2348 19 1 3.7923 9.5159 -0.4148 20 6 4.2372 11.1956 -1.6690 21 7 4.9653 11.6466 -2.6684 22 14 2.9985 12.3179 -0.8350 23 1 2.3123 11.5758 0.2530 24 1 3.7024 13.4941 -0.2638 25 1 1.9966 12.7760 -1.8307 26 7 3.4763 -0.7564 0.0046 27 8 2.3095 -1.0736 0.0060 28 1 -0.3634 -1.0276 0.0053 29 1 -0.3634 0.5184 0.8873 30 1 -0.3634 0.5092 -0.8927 31 1 2.0344 2.1271 -0.0004 32 1 5.4948 1.0362 -0.8940 33 1 5.4941 1.0453 0.8859 34 1 6.4142 3.3037 -0.9046 35 1 6.4128 3.3126 0.8754 36 1 8.0655 5.5493 1.1364 37 1 7.9380 4.5862 -0.3550 38 1 8.3872 6.3064 -0.4421 39 1 6.7519 7.9706 0.2926 40 1 5.0357 7.5057 0.3754 41 1 7.8445 8.5810 -1.6242 42 1 7.5455 7.3902 -2.9687 43 1 5.7577 8.7793 -3.9254 44 1 6.6546 10.1395 -3.1245 45 1 4.8591 12.5619 -2.9716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235745094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:28 Heat of formation + Delta-G solvation = 29.126892 kcal Electronic energy + Delta-G solvation = -26893.331197 eV Core-core repulsion = 22916.366641 eV Total energy + Delta-G solvation = -3976.964557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.98188 -41.16087 -39.80747 -38.75686 -36.46486 -35.29421 -34.30822 -34.28101 -31.08678 -29.91598 -29.22003 -28.63029 -27.72854 -26.76379 -25.43037 -24.05564 -23.69541 -21.44602 -21.08960 -20.20811 -18.81110 -18.77814 -18.53744 -17.92556 -17.65804 -17.50185 -17.02088 -16.54761 -16.19140 -15.96362 -15.67359 -15.27755 -14.94808 -14.56219 -14.37163 -14.11175 -14.07621 -13.98742 -13.67489 -13.49553 -13.44502 -13.26929 -13.16895 -12.97206 -12.85348 -12.64357 -12.46833 -12.20899 -12.18771 -11.80630 -11.62388 -11.43148 -11.28814 -10.87864 -10.75997 -10.66812 -10.28893 -9.59819 -8.92196 -7.91848 -5.26614 0.42211 1.14844 1.42153 1.43424 1.53510 1.55945 1.63261 2.13932 2.41845 2.54001 3.27767 3.32385 3.48019 3.55498 3.68846 3.83344 4.04072 4.09741 4.18948 4.22294 4.24123 4.31273 4.34684 4.40302 4.43791 4.46107 4.52743 4.69458 4.71238 4.85144 4.86334 4.91741 4.96028 4.97988 5.02963 5.09456 5.21031 5.23856 5.44436 5.54638 5.73958 5.90534 5.96100 6.44616 6.90870 7.17399 7.19152 7.58575 8.59691 9.24569 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.002478 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.767036 B =11295.390087 C =12576.699065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.022 4.022 3 C -0.237 4.237 4 C 0.007 3.993 5 C 0.144 3.856 6 O -0.390 6.390 7 C 0.056 3.944 8 C 0.498 3.502 9 O -0.581 6.581 10 N -0.605 5.605 11 C 0.065 3.935 12 C 0.133 3.867 13 C 0.134 3.866 14 H 0.023 0.977 15 C -0.124 4.124 16 C 0.136 3.864 17 N -0.632 5.632 18 C -0.224 4.224 19 H 0.072 0.928 20 C -0.064 4.064 21 N -0.950 5.950 22 Si 0.976 3.024 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.292 1.292 26 N -0.383 5.383 27 O 0.091 5.909 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.167 0.833 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.008 0.992 44 H 0.049 0.951 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.719 -25.198 6.746 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.259 4.259 4 C -0.150 4.150 5 C 0.067 3.933 6 O -0.308 6.308 7 C -0.023 4.023 8 C 0.287 3.713 9 O -0.460 6.460 10 N -0.340 5.340 11 C -0.076 4.076 12 C 0.008 3.992 13 C 0.027 3.973 14 H 0.040 0.960 15 C -0.162 4.162 16 C 0.010 3.990 17 N -0.358 5.358 18 C -0.353 4.353 19 H 0.090 0.910 20 C -0.257 4.257 21 N -0.599 5.599 22 Si 0.804 3.196 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.219 1.219 26 N -0.091 5.091 27 O 0.026 5.974 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.185 0.815 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.057 0.943 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.026 0.974 44 H 0.067 0.933 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.607 -25.695 6.833 26.984 hybrid contribution -1.248 1.848 -0.060 2.231 sum 3.360 -23.847 6.773 25.017 Atomic orbital electron populations 1.20582 0.80875 1.06175 1.05473 1.25187 0.97906 0.84880 1.00584 1.22525 0.91468 1.01686 1.10221 1.23556 0.98267 0.90258 1.02962 1.20496 0.89755 0.79110 1.03949 1.87935 1.31023 1.15953 1.95929 1.22415 0.87995 0.85897 1.06015 1.21084 0.85365 0.88882 0.75977 1.90737 1.20559 1.84120 1.50609 1.47874 1.08646 1.05319 1.72117 1.22267 0.78076 1.03622 1.03619 1.21431 1.00435 0.80890 0.96394 1.22483 0.93137 0.86960 0.94721 0.95994 1.23524 0.94874 0.98212 0.99553 1.22209 0.89484 0.97983 0.89278 1.46102 1.47177 1.11781 1.30763 1.19216 1.12859 0.91490 1.11709 0.91012 1.25588 1.02200 0.98299 0.99639 1.70006 1.43971 1.15958 1.29950 0.85049 0.78177 0.78716 0.77646 1.19550 1.21049 1.21935 1.73737 0.98042 1.15438 1.21850 1.84761 1.11043 1.33677 1.67874 0.88001 0.87773 0.87932 0.81526 0.88676 0.88428 0.86448 0.86163 0.90472 0.87955 0.89576 0.88581 0.94289 0.88705 0.88817 0.97429 0.93274 0.94180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.45 71.24 0.74 0.04 16 2 C -0.02 -0.41 7.49 25.04 0.19 -0.23 16 3 C -0.24 -5.56 10.45 22.40 0.23 -5.33 16 4 C 0.01 0.17 7.28 43.58 0.32 0.49 16 5 C 0.14 2.57 6.56 71.23 0.47 3.04 16 6 O -0.39 -9.44 9.37 -129.94 -1.22 -10.66 16 7 C 0.06 1.00 4.87 71.23 0.35 1.34 16 8 C 0.50 14.90 7.71 87.65 0.68 15.58 16 9 O -0.58 -25.10 16.13 16.00 0.26 -24.84 16 10 N -0.61 -15.82 2.88 -846.73 -2.44 -18.26 16 11 C 0.07 0.84 10.24 127.77 1.31 2.15 16 12 C 0.13 4.77 5.34 86.38 0.46 5.23 16 13 C 0.13 5.60 4.27 41.79 0.18 5.78 16 14 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 15 C -0.12 -4.30 8.03 31.02 0.25 -4.05 16 16 C 0.14 6.60 7.54 83.26 0.63 7.22 16 17 N -0.63 -33.86 3.64 -713.44 -2.60 -36.46 16 18 C -0.22 -13.28 10.55 84.03 0.89 -12.40 16 19 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 20 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 21 N -0.95 -58.70 11.42 21.65 0.25 -58.45 16 22 Si 0.98 47.65 29.55 68.60 2.03 49.68 16 23 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 25 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 26 N -0.38 -9.22 12.07 -49.55 -0.60 -9.82 16 27 O 0.09 1.99 11.20 71.67 0.80 2.79 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.17 4.24 8.05 -2.91 -0.02 4.21 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.12 1.30 7.58 -2.38 -0.02 1.28 16 35 H 0.12 1.20 8.05 -2.39 -0.02 1.19 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 0.63 6.44 -2.39 -0.02 0.62 16 38 H 0.09 1.06 8.07 -2.39 -0.02 1.04 16 39 H 0.10 3.13 7.77 -2.39 -0.02 3.11 16 40 H 0.04 1.73 7.51 -2.39 -0.02 1.71 16 41 H 0.09 3.00 7.94 -2.39 -0.02 2.98 16 42 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 44 H 0.05 2.64 6.91 -2.39 -0.02 2.63 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -87.12 381.61 4.61 -82.51 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.99 Total: 7.95 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 7.15 Total: 15.55 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -5.39 Total: -122.99 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.16 Total: -32.70 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -87.12 4.61 -82.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235745094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.637 kcal (2) G-P(sol) polarization free energy of solvation -87.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds