Wall clock time and date at job start Tue Mar 31 2020 14:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86305 * 109.46866 * 2 1 4 4 C 1.86295 * 109.47466 * 240.00049 * 2 1 3 5 5 O 1.63096 * 109.47337 * 119.99726 * 2 1 3 6 6 C 1.35906 * 113.99897 * 63.29999 * 5 2 1 7 7 C 1.38747 * 120.05725 * 275.73331 * 6 5 2 8 8 C 1.38120 * 119.94238 * 180.02562 * 7 6 5 9 9 C 1.38290 * 120.05916 * 0.02562 * 8 7 6 10 10 C 1.38244 * 120.10785 * 359.70564 * 9 8 7 11 11 C 1.38170 * 120.05451 * 0.55001 * 10 9 8 12 12 C 1.50701 * 120.02713 * 179.75229 * 11 10 9 13 13 N 1.46901 * 109.46784 * 257.51483 * 12 11 10 14 14 C 1.47444 * 111.00070 * 176.62740 * 13 12 11 15 15 C 1.54327 * 107.23274 * 236.74310 * 14 13 12 16 16 H 1.08996 * 110.70568 * 96.09330 * 15 14 13 17 17 F 1.39901 * 110.70449 * 219.15976 * 15 14 13 18 18 C 1.55146 * 103.17278 * 337.62672 * 15 14 13 19 19 C 1.47849 * 111.00204 * 55.78398 * 13 12 11 20 20 C 1.50702 * 110.37065 * 265.19234 * 19 13 12 21 21 N 1.27944 * 120.00234 * 5.00269 * 20 19 13 22 22 Si 1.86801 * 119.99722 * 184.99509 * 20 19 13 23 23 H 1.48501 * 109.46864 * 90.00637 * 22 20 19 24 24 H 1.48496 * 109.47148 * 209.99963 * 22 20 19 25 25 H 1.48497 * 109.47336 * 330.00185 * 22 20 19 26 26 H 1.08997 * 109.47520 * 300.00299 * 1 2 3 27 27 H 1.08997 * 109.47197 * 60.00635 * 1 2 3 28 28 H 1.09000 * 109.46697 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47331 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47127 * 299.99984 * 3 2 1 31 31 H 1.08998 * 109.47101 * 60.00072 * 3 2 1 32 32 H 1.08999 * 109.47283 * 290.64321 * 4 2 1 33 33 H 1.09000 * 109.47444 * 50.64408 * 4 2 1 34 34 H 1.08998 * 109.47341 * 170.64212 * 4 2 1 35 35 H 1.08000 * 120.03332 * 0.02562 * 7 6 5 36 36 H 1.08004 * 119.97451 * 180.02562 * 8 7 6 37 37 H 1.07989 * 119.94742 * 179.97438 * 9 8 7 38 38 H 1.07996 * 119.97364 * 180.27085 * 10 9 8 39 39 H 1.08999 * 109.47568 * 137.51900 * 12 11 10 40 40 H 1.08995 * 109.47315 * 17.51078 * 12 11 10 41 41 H 1.08996 * 109.89334 * 117.33778 * 14 13 12 42 42 H 1.08997 * 109.88628 * 356.14691 * 14 13 12 43 43 H 1.08999 * 110.98318 * 153.83267 * 18 15 14 44 44 H 1.08996 * 110.99050 * 277.64537 * 18 15 14 45 45 H 1.08999 * 110.37227 * 27.53342 * 19 13 12 46 46 H 0.97001 * 119.99751 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 8 2.4067 -0.7688 1.3317 6 6 2.0650 -2.0829 1.3895 7 6 0.8267 -2.4576 1.8908 8 6 0.4821 -3.7938 1.9490 9 6 1.3703 -4.7580 1.5087 10 6 2.6026 -4.3869 1.0037 11 6 2.9541 -3.0518 0.9483 12 6 4.2998 -2.6484 0.4028 13 7 5.1998 -2.3173 1.5156 14 6 6.5518 -1.9947 1.0236 15 6 7.5352 -2.9544 1.7262 16 1 7.7487 -3.8171 1.0953 17 9 8.7173 -2.2886 2.0676 18 6 6.7604 -3.3844 2.9997 19 6 5.3018 -3.4438 2.4677 20 6 4.3234 -3.2640 3.5998 21 7 3.4939 -2.2901 3.5798 22 14 4.3217 -4.4632 5.0321 23 1 5.2486 -3.9772 6.0856 24 1 2.9492 -4.5664 5.5896 25 1 4.7658 -5.7991 4.5597 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7566 0.0005 30 1 2.1206 2.2703 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.2636 -1.9427 -1.4415 33 1 1.9908 -0.4700 -2.4032 34 1 3.5612 -0.7357 -1.6085 35 1 0.1328 -1.7050 2.2352 36 1 -0.4819 -4.0860 2.3387 37 1 1.0992 -5.8023 1.5554 38 1 3.2928 -5.1414 0.6564 39 1 4.1841 -1.7774 -0.2423 40 1 4.7209 -3.4731 -0.1721 41 1 6.8001 -0.9627 1.2713 42 1 6.5983 -2.1408 -0.0555 43 1 7.0929 -4.3626 3.3472 44 1 6.8590 -2.6377 3.7875 45 1 5.1227 -4.3899 1.9569 46 1 2.8639 -2.1747 4.3083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237727264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:22 Heat of formation + Delta-G solvation = -56.294229 kcal Electronic energy + Delta-G solvation = -27609.150067 eV Core-core repulsion = 23958.112119 eV Total energy + Delta-G solvation = -3651.037948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.154 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.53861 -41.29728 -39.59692 -37.35226 -35.74081 -33.98565 -31.35451 -30.43641 -29.70737 -29.59845 -28.54517 -28.33859 -26.33231 -23.93218 -23.34679 -22.33992 -22.06987 -20.21815 -18.70199 -18.09898 -17.25762 -17.06536 -16.87186 -16.49064 -16.23678 -15.93819 -15.67615 -14.99973 -14.82608 -14.74182 -14.56918 -14.38112 -14.12627 -14.08252 -13.81609 -13.52301 -13.44968 -13.38065 -13.26311 -13.24226 -13.10277 -12.95055 -12.91809 -12.71166 -12.48841 -12.32181 -12.21281 -12.01767 -11.83392 -11.72894 -11.51606 -11.11647 -10.78582 -10.40839 -9.71432 -9.60543 -9.16370 -8.96762 0.44219 0.46555 1.05043 1.14607 1.40637 1.50126 1.82595 1.86528 1.87243 2.01387 2.45723 2.79976 3.11797 3.21941 3.47163 3.53896 3.79851 3.88994 3.96021 3.99654 4.14883 4.23466 4.29459 4.38409 4.45920 4.53981 4.58620 4.65647 4.67717 4.69401 4.72386 4.74541 4.76358 4.78652 4.81761 4.84167 4.93831 5.13018 5.15151 5.25847 5.43802 5.47135 5.55018 5.56018 5.64905 5.68977 5.75888 5.95040 6.09010 6.39549 7.22434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.511 4.511 2 Si 1.260 2.740 3 C -0.465 4.465 4 C -0.510 4.510 5 O -0.535 6.535 6 C 0.202 3.798 7 C -0.177 4.177 8 C -0.095 4.095 9 C -0.151 4.151 10 C -0.097 4.097 11 C -0.116 4.116 12 C 0.090 3.910 13 N -0.484 5.484 14 C 0.016 3.984 15 C 0.072 3.928 16 H 0.094 0.906 17 F -0.203 7.203 18 C -0.150 4.150 19 C 0.107 3.893 20 C -0.011 4.011 21 N -0.559 5.559 22 Si 0.913 3.087 23 H -0.240 1.240 24 H -0.246 1.246 25 H -0.236 1.236 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.040 0.960 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.999 -2.637 -1.318 3.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.613 4.613 2 Si 1.397 2.603 3 C -0.572 4.572 4 C -0.612 4.612 5 O -0.488 6.488 6 C 0.157 3.843 7 C -0.196 4.196 8 C -0.113 4.113 9 C -0.169 4.169 10 C -0.115 4.115 11 C -0.117 4.117 12 C -0.036 4.036 13 N -0.208 5.208 14 C -0.112 4.112 15 C 0.034 3.966 16 H 0.111 0.889 17 F -0.183 7.183 18 C -0.190 4.190 19 C -0.002 4.002 20 C -0.262 4.262 21 N -0.170 5.170 22 Si 0.729 3.271 23 H -0.163 1.163 24 H -0.169 1.169 25 H -0.158 1.158 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.112 0.888 40 H 0.058 0.942 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.242 -1.935 -0.808 2.437 hybrid contribution -0.100 -0.804 -0.183 0.831 sum -1.343 -2.738 -0.991 3.207 Atomic orbital electron populations 1.27056 1.24963 1.04657 1.04576 0.77317 0.63497 0.64443 0.55017 1.26285 1.07045 1.19116 1.04739 1.27134 1.06629 1.09037 1.18413 1.83849 1.79799 1.22102 1.63020 1.17500 0.90692 0.82242 0.93890 1.21327 0.96761 0.96940 1.04532 1.20983 0.99360 0.92354 0.98607 1.21016 0.94507 0.99504 1.01859 1.20926 0.96788 0.94670 0.99147 1.19661 0.96085 0.92762 1.03173 1.21305 0.89738 1.00474 0.92127 1.63580 1.06919 1.36806 1.13483 1.23501 0.87867 1.00966 0.98866 1.22792 0.81696 0.95101 0.96971 0.88853 1.92844 1.49282 1.82602 1.93595 1.23407 0.93383 1.03896 0.98291 1.21735 0.92564 0.93799 0.92128 1.29781 0.95574 0.98932 1.01891 1.68359 1.02590 1.17854 1.28198 0.85967 0.82408 0.80214 0.78540 1.16335 1.16923 1.15821 0.91004 0.90909 0.91065 0.90599 0.90583 0.90724 0.91035 0.90761 0.90839 0.85445 0.86019 0.86150 0.86196 0.88826 0.94165 0.88688 0.91416 0.89082 0.88548 0.90352 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.15 8.10 101.05 0.82 0.97 16 2 Si 1.26 -1.11 12.13 -169.99 -2.06 -3.17 16 3 C -0.47 0.14 8.65 101.05 0.87 1.02 16 4 C -0.51 0.38 7.24 101.05 0.73 1.11 16 5 O -0.53 -0.67 7.88 -19.44 -0.15 -0.83 16 6 C 0.20 0.21 2.13 -39.22 -0.08 0.13 16 7 C -0.18 -0.13 8.34 -39.44 -0.33 -0.45 16 8 C -0.09 -0.01 10.04 -39.61 -0.40 -0.41 16 9 C -0.15 0.03 10.04 -39.56 -0.40 -0.37 16 10 C -0.10 0.02 8.61 -39.60 -0.34 -0.32 16 11 C -0.12 -0.05 2.39 -104.47 -0.25 -0.30 16 12 C 0.09 -0.01 4.13 -4.97 -0.02 -0.03 16 13 N -0.48 -0.21 4.46 -225.88 -1.01 -1.21 16 14 C 0.02 -0.01 6.72 -2.83 -0.02 -0.03 16 15 C 0.07 -0.05 4.74 -24.90 -0.12 -0.17 16 16 H 0.09 -0.23 8.14 -51.93 -0.42 -0.66 16 17 F -0.20 -0.45 17.18 2.25 0.04 -0.41 16 18 C -0.15 0.16 5.40 -24.34 -0.13 0.02 16 19 C 0.11 -0.05 1.92 -67.08 -0.13 -0.18 16 20 C -0.01 0.00 4.41 -13.90 -0.06 -0.06 16 21 N -0.56 -0.86 9.48 56.23 0.53 -0.33 16 22 Si 0.91 -0.30 28.81 -169.99 -4.90 -5.20 16 23 H -0.24 -0.12 7.11 56.52 0.40 0.29 16 24 H -0.25 -0.16 7.11 56.52 0.40 0.24 16 25 H -0.24 0.13 7.11 56.52 0.40 0.53 16 26 H 0.07 -0.01 7.96 -51.93 -0.41 -0.43 16 27 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 28 H 0.07 0.00 7.07 -51.93 -0.37 -0.36 16 29 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 30 H 0.08 -0.08 7.96 -51.93 -0.41 -0.49 16 31 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 32 H 0.07 -0.02 7.06 -51.93 -0.37 -0.38 16 33 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 34 H 0.07 -0.07 6.71 -51.93 -0.35 -0.42 16 35 H 0.13 0.00 7.79 -52.49 -0.41 -0.41 16 36 H 0.12 -0.16 8.06 -52.48 -0.42 -0.59 16 37 H 0.12 -0.20 8.06 -52.49 -0.42 -0.62 16 38 H 0.12 -0.23 7.96 -52.49 -0.42 -0.64 16 39 H 0.09 -0.02 4.17 -51.93 -0.22 -0.24 16 40 H 0.04 -0.05 7.97 -51.93 -0.41 -0.47 16 41 H 0.09 0.06 8.10 -51.93 -0.42 -0.36 16 42 H 0.07 -0.11 7.58 -51.93 -0.39 -0.51 16 43 H 0.09 -0.25 8.12 -51.93 -0.42 -0.67 16 44 H 0.10 0.00 8.06 -51.93 -0.42 -0.42 16 45 H 0.08 -0.14 7.06 -51.93 -0.37 -0.51 16 46 H 0.33 0.26 8.23 -40.82 -0.34 -0.08 16 LS Contribution 362.02 15.07 5.46 5.46 Total: 0.00 -4.35 362.02 -9.39 -13.73 By element: Atomic # 1 Polarization: -1.54 SS G_CDS: -7.44 Total: -8.98 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 0.15 Total: 0.94 kcal Atomic # 7 Polarization: -1.07 SS G_CDS: -0.47 Total: -1.54 kcal Atomic # 8 Polarization: -0.67 SS G_CDS: -0.15 Total: -0.83 kcal Atomic # 9 Polarization: -0.45 SS G_CDS: 0.04 Total: -0.41 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: -6.96 Total: -8.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -4.35 -9.39 -13.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237727264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.561 kcal (2) G-P(sol) polarization free energy of solvation -4.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds