Wall clock time and date at job start Tue Mar 31 2020 14:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00221 * 2 1 4 4 C 1.52996 * 109.47463 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47400 * 179.97438 * 4 3 2 6 6 N 1.46493 * 109.47246 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00203 * 179.97438 * 6 5 4 8 8 S 1.71201 * 119.99906 * 5.06373 * 7 6 5 9 9 N 1.34773 * 120.00448 * 185.06010 * 7 6 5 10 10 C 1.46508 * 119.99939 * 354.74636 * 9 7 6 11 11 C 1.50704 * 109.47010 * 277.19447 * 10 9 7 12 12 H 1.08000 * 120.00197 * 114.43184 * 11 10 9 13 13 C 1.37877 * 119.99638 * 294.42751 * 11 10 9 14 14 N 1.31516 * 120.00118 * 4.55195 * 13 11 10 15 15 Si 1.86795 * 119.99818 * 184.54461 * 13 11 10 16 16 H 1.48493 * 109.47546 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46947 * 120.00485 * 15 13 11 18 18 H 1.48502 * 109.47328 * 240.00057 * 15 13 11 19 19 C 1.46493 * 120.00263 * 174.74249 * 9 7 6 20 20 C 1.50697 * 109.47253 * 275.05761 * 19 9 7 21 21 C 1.38675 * 120.42013 * 269.71968 * 20 19 9 22 22 C 1.38631 * 118.42118 * 179.78495 * 21 20 19 23 23 C 1.38225 * 119.15896 * 0.50935 * 22 21 20 24 24 N 1.31856 * 120.76585 * 359.73371 * 23 22 21 25 25 C 1.31889 * 121.72496 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47244 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47203 * 300.00169 * 1 2 3 28 28 H 1.08996 * 109.47112 * 60.00611 * 1 2 3 29 29 H 1.08995 * 109.46991 * 59.99384 * 3 2 1 30 30 H 1.09003 * 109.46813 * 299.99770 * 3 2 1 31 31 H 1.09005 * 109.47093 * 59.99409 * 4 3 2 32 32 H 1.09003 * 109.46882 * 299.99684 * 4 3 2 33 33 H 1.09004 * 109.46812 * 59.99649 * 5 4 3 34 34 H 1.09003 * 109.46996 * 299.99799 * 5 4 3 35 35 H 0.97006 * 120.00580 * 0.02562 * 6 5 4 36 36 H 1.08992 * 109.47162 * 157.19215 * 10 9 7 37 37 H 1.08999 * 109.46965 * 37.19096 * 10 9 7 38 38 H 0.96997 * 119.99978 * 179.97438 * 14 13 11 39 39 H 1.09000 * 109.47445 * 35.06203 * 19 9 7 40 40 H 1.09002 * 109.47397 * 155.05909 * 19 9 7 41 41 H 1.08002 * 120.79170 * 0.02562 * 21 20 19 42 42 H 1.08002 * 120.42160 * 180.22297 * 22 21 20 43 43 H 1.08000 * 119.62325 * 179.74757 * 23 22 21 44 44 H 1.08001 * 119.61851 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6181 2.4667 -0.0013 7 6 6.3821 3.5770 -0.0023 8 16 5.6507 5.1195 0.1272 9 7 7.7219 3.4731 -0.1053 10 6 8.3568 2.1528 -0.1001 11 6 8.5273 1.6829 1.3216 12 1 7.9838 0.8185 1.6736 13 6 9.3771 2.3566 2.1731 14 7 9.9700 3.4602 1.7729 15 14 9.6863 1.7018 3.8949 16 1 8.9060 0.4548 4.0979 17 1 11.1333 1.4126 4.0621 18 1 9.2659 2.7173 4.8936 19 6 8.5434 4.6804 -0.2224 20 6 8.6089 5.1052 -1.6668 21 6 9.6161 4.6304 -2.4934 22 6 9.6342 5.0446 -3.8162 23 6 8.6610 5.9193 -4.2615 24 7 7.7209 6.3544 -3.4456 25 6 7.6693 5.9771 -2.1829 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.8567 0.6438 -0.8908 32 1 3.8574 0.6436 0.8892 33 1 3.8365 3.1235 0.8887 34 1 3.8358 3.1230 -0.8913 35 1 6.0354 1.5909 -0.0013 36 1 9.3328 2.2171 -0.5810 37 1 7.7298 1.4460 -0.6436 38 1 10.5676 3.9344 2.3720 39 1 8.1011 5.4800 0.3718 40 1 9.5497 4.4719 0.1409 41 1 10.3663 3.9509 -2.1165 42 1 10.4018 4.6920 -4.4892 43 1 8.6704 6.2500 -5.2895 44 1 6.8839 6.3543 -1.5448 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245582502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:05 Heat of formation + Delta-G solvation = 1.527494 kcal Electronic energy + Delta-G solvation = -25149.203238 eV Core-core repulsion = 21613.794753 eV Total energy + Delta-G solvation = -3535.408485 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.75116 -38.60144 -37.99456 -35.77044 -33.11566 -32.67493 -31.62684 -30.84009 -28.39862 -27.31355 -25.91774 -24.43739 -23.92143 -22.93479 -21.88202 -21.69959 -20.40643 -17.64570 -17.01504 -16.66919 -16.39484 -16.29005 -15.99358 -15.60425 -15.18251 -15.06216 -14.83248 -14.59406 -14.05659 -13.86839 -13.47245 -13.11014 -12.87705 -12.64798 -12.59910 -12.29787 -11.99248 -11.85120 -11.78421 -11.30094 -11.26740 -11.21023 -11.15465 -10.79941 -10.62569 -10.27125 -10.02417 -9.89401 -9.83089 -9.36270 -9.01331 -8.97108 -8.55293 -7.91433 -6.86321 -6.65091 -6.47960 -4.71262 1.55397 1.75159 2.43680 2.87172 3.05222 3.15489 3.16700 3.31858 3.79740 4.04727 4.17306 4.45455 4.86917 4.90607 4.95818 4.97440 5.07589 5.14674 5.22638 5.23449 5.39073 5.46062 5.46341 5.52940 5.54229 5.64932 5.75927 5.97451 6.06024 6.11823 6.15221 6.24442 6.50203 6.54249 6.63661 6.85876 6.91349 6.99398 7.01759 7.28250 7.40958 7.48161 7.62140 7.91568 8.13536 8.44636 8.48507 9.06315 10.47309 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007962 B = 0.004829 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3515.669414 B = 5797.240451 C = 8418.066356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.067 3.933 4 C -0.133 4.133 5 C 0.135 3.865 6 N -0.692 5.692 7 C 0.576 3.424 8 S -0.730 6.730 9 N -0.509 5.509 10 C 0.210 3.790 11 C -0.547 4.547 12 H 0.066 0.934 13 C 0.082 3.918 14 N -0.868 5.868 15 Si 0.907 3.093 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.141 3.859 20 C -0.146 4.146 21 C -0.064 4.064 22 C -0.190 4.190 23 C 0.083 3.917 24 N -0.495 5.495 25 C 0.118 3.882 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.401 0.599 36 H 0.057 0.943 37 H 0.028 0.972 38 H 0.272 0.728 39 H 0.097 0.903 40 H 0.149 0.851 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.145 0.855 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -4.210 -6.176 9.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.010 4.010 4 C -0.171 4.171 5 C 0.010 3.990 6 N -0.325 5.325 7 C 0.212 3.788 8 S -0.602 6.602 9 N -0.210 5.210 10 C 0.090 3.910 11 C -0.585 4.585 12 H 0.084 0.916 13 C -0.125 4.125 14 N -0.504 5.504 15 Si 0.733 3.267 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.205 1.205 19 C 0.018 3.982 20 C -0.149 4.149 21 C -0.091 4.091 22 C -0.210 4.210 23 C -0.074 4.074 24 N -0.204 5.204 25 C -0.039 4.039 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.240 0.760 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.166 0.834 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.162 0.838 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.143 -2.744 -6.356 9.948 hybrid contribution 1.270 -1.900 1.149 2.558 sum -5.874 -4.644 -5.206 9.120 Atomic orbital electron populations 1.22727 0.81002 1.02628 1.00075 1.87857 1.19722 1.28183 1.95483 1.22350 0.93216 0.84519 1.00875 1.21701 0.93855 0.97503 1.04043 1.21281 0.77959 0.95559 1.04153 1.44668 1.06552 1.07034 1.74283 1.21864 0.84976 0.91155 0.80851 1.92778 1.75958 1.12501 1.78986 1.48336 1.01645 1.10243 1.60769 1.19769 0.94372 0.79388 0.97470 1.21437 1.27004 1.13839 0.96241 0.91553 1.25025 0.94142 0.93897 0.99409 1.69464 1.28683 1.15379 1.36843 0.86286 0.78249 0.79199 0.82920 1.19541 1.20463 1.20481 1.21308 1.00428 0.87022 0.89457 1.21653 0.95928 0.98402 0.98963 1.21602 0.97399 0.97016 0.93067 1.22016 1.01183 1.01069 0.96701 1.22683 0.91020 0.94448 0.99223 1.67821 1.23265 1.24220 1.05098 1.23879 0.96615 0.92383 0.91056 0.89741 0.94000 0.94042 0.92658 0.92802 0.90686 0.90309 0.89924 0.90497 0.76037 0.92520 0.95327 0.91743 0.88454 0.83355 0.85120 0.85672 0.83803 0.80036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.65 10.70 -35.23 -0.38 -5.03 16 3 C 0.07 0.74 5.94 37.16 0.22 0.96 16 4 C -0.13 -1.59 5.70 -26.73 -0.15 -1.74 16 5 C 0.14 1.99 5.14 -4.05 -0.02 1.97 16 6 N -0.69 -12.06 5.42 -62.03 -0.34 -12.39 16 7 C 0.58 11.95 7.57 -86.92 -0.66 11.29 16 8 S -0.73 -16.53 24.45 -107.50 -2.63 -19.16 16 9 N -0.51 -10.56 2.35 -178.46 -0.42 -10.98 16 10 C 0.21 4.32 5.11 -5.19 -0.03 4.29 16 11 C -0.55 -12.42 9.28 -34.44 -0.32 -12.74 16 12 H 0.07 1.50 7.82 -52.49 -0.41 1.09 16 13 C 0.08 1.92 5.43 -17.82 -0.10 1.82 16 14 N -0.87 -20.43 9.66 55.43 0.54 -19.89 16 15 Si 0.91 18.96 29.54 -169.99 -5.02 13.93 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 C 0.14 2.93 4.58 -5.20 -0.02 2.90 16 20 C -0.15 -2.76 5.44 -104.48 -0.57 -3.32 16 21 C -0.06 -1.07 9.86 -39.27 -0.39 -1.45 16 22 C -0.19 -2.77 10.11 -39.44 -0.40 -3.17 16 23 C 0.08 1.29 11.18 -17.55 -0.20 1.10 16 24 N -0.50 -9.23 10.36 -13.25 -0.14 -9.36 16 25 C 0.12 2.32 10.34 -17.55 -0.18 2.14 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16 34 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 35 H 0.40 6.63 6.27 -40.82 -0.26 6.38 16 36 H 0.06 1.20 8.02 -51.93 -0.42 0.78 16 37 H 0.03 0.53 6.62 -51.93 -0.34 0.19 16 38 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 39 H 0.10 2.22 6.64 -51.93 -0.34 1.87 16 40 H 0.15 3.24 5.18 -51.93 -0.27 2.97 16 41 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 42 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.18 3.88 5.65 -52.49 -0.30 3.58 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -27.63 372.16 -11.00 -38.64 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.53 Total: 13.23 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.70 Total: 5.41 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.36 Total: -52.63 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.38 Total: -5.03 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.93 kcal Atomic # 16 Polarization: -16.53 SS G_CDS: -2.63 Total: -19.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.63 -11.00 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245582502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.164 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds