Wall clock time and date at job start Tue Mar 31 2020 14:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00221 * 2 1 4 4 C 1.52996 * 109.47463 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47400 * 179.97438 * 4 3 2 6 6 N 1.46493 * 109.47246 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00203 * 179.97438 * 6 5 4 8 8 S 1.71201 * 119.99906 * 5.06373 * 7 6 5 9 9 N 1.34773 * 120.00448 * 185.06010 * 7 6 5 10 10 C 1.46508 * 119.99939 * 354.74636 * 9 7 6 11 11 C 1.50704 * 109.47010 * 277.19447 * 10 9 7 12 12 H 1.08000 * 120.00197 * 114.43184 * 11 10 9 13 13 C 1.37877 * 119.99638 * 294.42751 * 11 10 9 14 14 N 1.31516 * 120.00118 * 4.55195 * 13 11 10 15 15 Si 1.86795 * 119.99818 * 184.54461 * 13 11 10 16 16 H 1.48493 * 109.47546 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46947 * 120.00485 * 15 13 11 18 18 H 1.48502 * 109.47328 * 240.00057 * 15 13 11 19 19 C 1.46493 * 120.00263 * 174.74249 * 9 7 6 20 20 C 1.50697 * 109.47253 * 275.05761 * 19 9 7 21 21 C 1.38675 * 120.42013 * 269.71968 * 20 19 9 22 22 C 1.38631 * 118.42118 * 179.78495 * 21 20 19 23 23 C 1.38225 * 119.15896 * 0.50935 * 22 21 20 24 24 N 1.31856 * 120.76585 * 359.73371 * 23 22 21 25 25 C 1.31889 * 121.72496 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47244 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47203 * 300.00169 * 1 2 3 28 28 H 1.08996 * 109.47112 * 60.00611 * 1 2 3 29 29 H 1.08995 * 109.46991 * 59.99384 * 3 2 1 30 30 H 1.09003 * 109.46813 * 299.99770 * 3 2 1 31 31 H 1.09005 * 109.47093 * 59.99409 * 4 3 2 32 32 H 1.09003 * 109.46882 * 299.99684 * 4 3 2 33 33 H 1.09004 * 109.46812 * 59.99649 * 5 4 3 34 34 H 1.09003 * 109.46996 * 299.99799 * 5 4 3 35 35 H 0.97006 * 120.00580 * 0.02562 * 6 5 4 36 36 H 1.08992 * 109.47162 * 157.19215 * 10 9 7 37 37 H 1.08999 * 109.46965 * 37.19096 * 10 9 7 38 38 H 0.96997 * 119.99978 * 179.97438 * 14 13 11 39 39 H 1.09000 * 109.47445 * 35.06203 * 19 9 7 40 40 H 1.09002 * 109.47397 * 155.05909 * 19 9 7 41 41 H 1.08002 * 120.79170 * 0.02562 * 21 20 19 42 42 H 1.08002 * 120.42160 * 180.22297 * 22 21 20 43 43 H 1.08000 * 119.62325 * 179.74757 * 23 22 21 44 44 H 1.08001 * 119.61851 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6181 2.4667 -0.0013 7 6 6.3821 3.5770 -0.0023 8 16 5.6507 5.1195 0.1272 9 7 7.7219 3.4731 -0.1053 10 6 8.3568 2.1528 -0.1001 11 6 8.5273 1.6829 1.3216 12 1 7.9838 0.8185 1.6736 13 6 9.3771 2.3566 2.1731 14 7 9.9700 3.4602 1.7729 15 14 9.6863 1.7018 3.8949 16 1 8.9060 0.4548 4.0979 17 1 11.1333 1.4126 4.0621 18 1 9.2659 2.7173 4.8936 19 6 8.5434 4.6804 -0.2224 20 6 8.6089 5.1052 -1.6668 21 6 9.6161 4.6304 -2.4934 22 6 9.6342 5.0446 -3.8162 23 6 8.6610 5.9193 -4.2615 24 7 7.7209 6.3544 -3.4456 25 6 7.6693 5.9771 -2.1829 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.8567 0.6438 -0.8908 32 1 3.8574 0.6436 0.8892 33 1 3.8365 3.1235 0.8887 34 1 3.8358 3.1230 -0.8913 35 1 6.0354 1.5909 -0.0013 36 1 9.3328 2.2171 -0.5810 37 1 7.7298 1.4460 -0.6436 38 1 10.5676 3.9344 2.3720 39 1 8.1011 5.4800 0.3718 40 1 9.5497 4.4719 0.1409 41 1 10.3663 3.9509 -2.1165 42 1 10.4018 4.6920 -4.4892 43 1 8.6704 6.2500 -5.2895 44 1 6.8839 6.3543 -1.5448 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245582502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:05 Heat of formation + Delta-G solvation = -12.968990 kcal Electronic energy + Delta-G solvation = -25149.831853 eV Core-core repulsion = 21613.794753 eV Total energy + Delta-G solvation = -3536.037100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14769 -40.03639 -38.94129 -37.16301 -34.82586 -33.95466 -32.89921 -32.20430 -30.05238 -28.31005 -27.09997 -25.88379 -25.31534 -24.29673 -23.14608 -23.01453 -21.90913 -19.26697 -18.37615 -18.11340 -17.64590 -17.31183 -17.16896 -16.99482 -16.80946 -16.24623 -16.00822 -15.79552 -15.44976 -15.28749 -14.91369 -14.50203 -14.28463 -14.04719 -13.91275 -13.81089 -13.24321 -12.99501 -12.89966 -12.78713 -12.69907 -12.51048 -12.39910 -12.10971 -12.05591 -11.89860 -11.68708 -11.52382 -10.80790 -10.67724 -10.62830 -10.34117 -9.90731 -9.45163 -8.63217 -8.42560 -8.24743 -6.51801 0.22347 0.42720 0.78051 1.22379 1.37881 1.44471 1.50455 1.95127 2.31932 2.54756 2.93126 3.01787 3.19681 3.69156 3.92110 3.97889 4.03427 4.12479 4.14525 4.20535 4.28415 4.41692 4.45445 4.50348 4.53328 4.58204 4.64028 4.69380 4.86080 4.87003 4.94760 5.03795 5.06263 5.08116 5.25032 5.31748 5.40778 5.49841 5.72173 5.82836 5.92435 5.95202 6.19935 6.28695 6.48962 6.75178 7.14669 7.26846 8.68612 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007962 B = 0.004829 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3515.669414 B = 5797.240451 C = 8418.066356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.069 3.931 4 C -0.120 4.120 5 C 0.140 3.860 6 N -0.679 5.679 7 C 0.575 3.425 8 S -0.773 6.773 9 N -0.509 5.509 10 C 0.215 3.785 11 C -0.557 4.557 12 H 0.066 0.934 13 C 0.044 3.956 14 N -0.882 5.882 15 Si 0.954 3.046 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.293 1.293 19 C 0.155 3.845 20 C -0.159 4.159 21 C -0.068 4.068 22 C -0.172 4.172 23 C 0.084 3.916 24 N -0.517 5.517 25 C 0.102 3.898 26 H 0.098 0.902 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.408 0.592 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.271 0.729 39 H 0.067 0.933 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.169 0.831 43 H 0.184 0.816 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 -5.717 -7.805 11.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.008 4.008 4 C -0.158 4.158 5 C 0.016 3.984 6 N -0.312 5.312 7 C 0.208 3.792 8 S -0.647 6.647 9 N -0.210 5.210 10 C 0.094 3.906 11 C -0.595 4.595 12 H 0.084 0.916 13 C -0.160 4.160 14 N -0.518 5.518 15 Si 0.781 3.219 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.220 1.220 19 C 0.031 3.969 20 C -0.162 4.162 21 C -0.094 4.094 22 C -0.191 4.191 23 C -0.074 4.074 24 N -0.226 5.226 25 C -0.055 4.055 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.186 0.814 43 H 0.200 0.800 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.895 -4.280 -7.985 11.385 hybrid contribution 1.179 -1.448 1.571 2.440 sum -5.716 -5.728 -6.414 10.326 Atomic orbital electron populations 1.22936 0.79293 1.03881 1.00962 1.87810 1.21645 1.28408 1.95663 1.22315 0.92256 0.84624 1.01617 1.21560 0.94687 0.95343 1.04204 1.21330 0.76397 0.97350 1.03349 1.44780 1.07491 1.06336 1.72605 1.21699 0.85095 0.91196 0.81167 1.92842 1.76401 1.14778 1.80639 1.48243 1.01656 1.10359 1.60786 1.19724 0.94653 0.79467 0.96730 1.21656 1.26829 1.13813 0.97229 0.91573 1.25584 0.94461 0.94256 1.01741 1.69565 1.29030 1.15818 1.37373 0.85551 0.78205 0.78256 0.79877 1.19281 1.19951 1.21966 1.20996 0.99204 0.86053 0.90626 1.21417 0.97214 0.99437 0.98148 1.21778 0.96727 0.97040 0.93896 1.22427 1.01281 0.99344 0.96088 1.23373 0.89940 0.93702 1.00346 1.67790 1.24889 1.25109 1.04840 1.23461 0.96813 0.93550 0.91664 0.88401 0.93238 0.93031 0.92211 0.91850 0.90021 0.90563 0.91161 0.90790 0.75260 0.92947 0.93200 0.91941 0.91435 0.84418 0.84168 0.81392 0.79950 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.16 10.70 -148.98 -1.59 -10.76 16 3 C 0.07 1.41 5.94 71.98 0.43 1.84 16 4 C -0.12 -2.72 5.70 30.59 0.17 -2.55 16 5 C 0.14 4.05 5.14 86.38 0.44 4.50 16 6 N -0.68 -23.42 5.42 -350.18 -1.90 -25.32 16 7 C 0.58 24.15 7.57 179.05 1.36 25.51 16 8 S -0.77 -36.32 24.45 -56.49 -1.38 -37.70 16 9 N -0.51 -21.32 2.35 -718.53 -1.69 -23.01 16 10 C 0.21 8.66 5.11 85.63 0.44 9.10 16 11 C -0.56 -24.94 9.28 25.60 0.24 -24.70 16 12 H 0.07 2.92 7.82 -2.91 -0.02 2.90 16 13 C 0.04 2.06 5.43 84.65 0.46 2.52 16 14 N -0.88 -41.83 9.66 21.45 0.21 -41.62 16 15 Si 0.95 38.73 29.54 68.60 2.03 40.76 16 16 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 19 C 0.16 6.61 4.58 85.63 0.39 7.00 16 20 C -0.16 -6.03 5.44 -19.77 -0.11 -6.14 16 21 C -0.07 -2.14 9.86 22.47 0.22 -1.92 16 22 C -0.17 -4.41 10.11 22.36 0.23 -4.19 16 23 C 0.08 2.34 11.18 84.69 0.95 3.29 16 24 N -0.52 -18.88 10.36 -195.84 -2.03 -20.90 16 25 C 0.10 4.09 10.34 84.67 0.88 4.97 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.25 7.89 -2.38 -0.02 2.23 16 34 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 35 H 0.41 13.03 6.27 -92.70 -0.58 12.44 16 36 H 0.05 2.17 8.02 -2.39 -0.02 2.15 16 37 H 0.05 1.77 6.62 -2.39 -0.02 1.76 16 38 H 0.27 12.51 8.31 -92.71 -0.77 11.74 16 39 H 0.07 3.25 6.64 -2.39 -0.02 3.24 16 40 H 0.14 6.17 5.18 -2.39 -0.01 6.16 16 41 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 42 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 43 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 44 H 0.16 7.05 5.65 -2.91 -0.02 7.03 16 Total: -1.00 -60.35 372.16 1.40 -58.94 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: 0.42 Total: 38.75 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 7.34 Total: 20.86 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -5.41 Total: -110.86 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.59 Total: -10.76 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Atomic # 16 Polarization: -36.32 SS G_CDS: -1.38 Total: -37.70 kcal Total: -60.35 1.40 -58.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245582502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.976 kcal (2) G-P(sol) polarization free energy of solvation -60.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds