Wall clock time and date at job start Tue Mar 31 2020 14:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99902 * 2 1 4 4 H 1.48507 * 109.46920 * 269.99955 * 3 2 1 5 5 H 1.48503 * 109.47394 * 29.99802 * 3 2 1 6 6 H 1.48501 * 109.47288 * 149.99948 * 3 2 1 7 7 C 1.37878 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00134 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46940 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47022 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47156 * 180.02562 * 11 10 9 13 13 C 1.34230 * 117.00213 * 179.97438 * 12 11 10 14 14 O 1.20824 * 119.99780 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00107 * 179.97438 * 13 12 11 16 16 N 1.46508 * 109.46847 * 180.02562 * 15 13 12 17 17 N 1.40443 * 126.30135 * 270.20244 * 16 15 13 18 18 C 1.28443 * 108.09038 * 180.20006 * 17 16 15 19 19 N 1.38435 * 108.79626 * 359.68383 * 18 17 16 20 20 C 1.33807 * 108.43352 * 0.15275 * 19 18 17 21 21 O 1.21807 * 126.35450 * 180.10149 * 20 19 18 22 22 C 1.47221 * 122.75009 * 180.12834 * 19 18 17 23 23 C 1.53144 * 107.83651 * 67.39408 * 22 19 18 24 24 C 1.51009 * 111.77777 * 276.77793 * 23 22 19 25 25 C 1.51072 * 115.14385 * 70.80868 * 24 23 22 26 26 C 1.51506 * 128.60730 * 179.97438 * 18 17 16 27 27 H 0.96996 * 119.99995 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46930 * 60.00012 * 9 7 2 29 29 H 1.09000 * 109.47043 * 299.99374 * 9 7 2 30 30 H 1.09000 * 109.47377 * 60.00325 * 10 9 7 31 31 H 1.09004 * 109.47560 * 299.99928 * 10 9 7 32 32 H 1.09000 * 109.46857 * 59.99911 * 11 10 9 33 33 H 1.09000 * 109.46924 * 299.99804 * 11 10 9 34 34 H 1.08991 * 109.47233 * 60.00378 * 15 13 12 35 35 H 1.09004 * 109.47264 * 300.00030 * 15 13 12 36 36 H 1.08993 * 109.78725 * 307.81089 * 22 19 18 37 37 H 1.09001 * 109.83410 * 187.00484 * 22 19 18 38 38 H 1.09000 * 109.01511 * 156.18916 * 23 22 19 39 39 H 1.09002 * 108.96021 * 37.33104 * 23 22 19 40 40 H 1.09000 * 108.34685 * 309.33985 * 24 23 22 41 41 H 1.09003 * 108.20804 * 192.17566 * 24 23 22 42 42 H 1.08997 * 109.06756 * 169.07225 * 25 24 23 43 43 H 1.09004 * 109.06584 * 50.14069 * 25 24 23 44 44 H 1.09000 * 109.81485 * 232.27311 * 26 18 17 45 45 H 1.08997 * 109.81078 * 353.10780 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 8 2.4239 -6.0907 0.0005 13 6 1.9109 -7.3311 0.0006 14 8 0.7131 -7.4895 -0.0003 15 6 2.8290 -8.5262 0.0006 16 7 2.0310 -9.7549 0.0001 17 7 1.5745 -10.4503 1.1316 18 6 0.9148 -11.4765 0.7298 19 7 0.9081 -11.4884 -0.6545 20 6 1.5953 -10.4262 -1.0901 21 8 1.7917 -10.1205 -2.2527 22 6 0.2322 -12.5352 -1.4387 23 6 -1.2757 -12.3889 -1.2150 24 6 -1.7225 -13.0719 0.0555 25 6 -1.2852 -12.3977 1.3348 26 6 0.2235 -12.5399 1.5585 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8905 31 1 2.8720 -3.6043 -0.8895 32 1 0.8540 -5.0446 -0.8903 33 1 0.8534 -5.0451 0.8897 34 1 3.4577 -8.5013 0.8905 35 1 3.4578 -8.5013 -0.8894 36 1 0.5614 -13.5184 -1.1026 37 1 0.4620 -12.4109 -2.4969 38 1 -1.8045 -12.8296 -2.0601 39 1 -1.5236 -11.3291 -1.1546 40 1 -1.3323 -14.0897 0.0533 41 1 -2.8113 -13.1236 0.0497 42 1 -1.8138 -12.8495 2.1741 43 1 -1.5393 -11.3389 1.2840 44 1 0.5527 -13.5288 1.2397 45 1 0.4564 -12.3954 2.6135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248600792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:54 Heat of formation + Delta-G solvation = -60.297801 kcal Electronic energy + Delta-G solvation = -27002.423021 eV Core-core repulsion = 23021.580718 eV Total energy + Delta-G solvation = -3980.842302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.84368 -40.21281 -38.16659 -37.28925 -36.49266 -34.52274 -33.98920 -33.40096 -31.72783 -30.55116 -29.18369 -27.31390 -26.25067 -24.44327 -23.42787 -22.30244 -20.98864 -20.89978 -20.67537 -20.29893 -18.04285 -17.73286 -16.93907 -16.55520 -16.32957 -16.23797 -15.94584 -15.67032 -15.32675 -14.91685 -14.60866 -14.45615 -14.25148 -13.91316 -13.44496 -13.15716 -13.13093 -12.79380 -12.41616 -12.29900 -12.18788 -11.97044 -11.91284 -11.85772 -11.52507 -11.29152 -11.26731 -10.96306 -10.75439 -10.63631 -10.57565 -10.44180 -10.39194 -10.13024 -9.71502 -9.50362 -9.15770 -8.80983 -8.37773 -6.02404 -4.05460 1.33573 1.66374 2.26347 2.41400 2.63777 3.01728 3.32142 3.38107 3.41789 3.89534 4.06431 4.14337 4.21528 4.40366 4.44143 4.60432 4.74842 4.78216 4.79730 4.88406 4.91956 5.00879 5.11508 5.23716 5.33518 5.40273 5.49085 5.54097 5.58663 5.60945 5.62899 5.64118 5.76880 5.84171 6.01571 6.23661 6.46616 6.55117 6.83432 6.99111 7.37954 7.61331 7.72286 7.79098 7.89081 7.95938 8.36872 9.00791 9.58738 11.09108 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.002025 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.667854 B =13821.606826 C =14087.074324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.070 3.930 12 O -0.355 6.355 13 C 0.440 3.560 14 O -0.500 6.500 15 C 0.172 3.828 16 N -0.447 5.447 17 N -0.265 5.265 18 C 0.279 3.721 19 N -0.559 5.559 20 C 0.661 3.339 21 O -0.551 6.551 22 C 0.131 3.869 23 C -0.142 4.142 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.037 4.037 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -33.740 2.518 33.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.003 4.003 12 O -0.270 6.270 13 C 0.280 3.720 14 O -0.387 6.387 15 C 0.049 3.951 16 N -0.267 5.267 17 N -0.085 5.085 18 C 0.000 4.000 19 N -0.288 5.288 20 C 0.361 3.639 21 O -0.424 6.424 22 C 0.010 3.990 23 C -0.180 4.180 24 C -0.159 4.159 25 C -0.160 4.160 26 C -0.077 4.077 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.147 -32.782 2.433 32.873 hybrid contribution -0.087 0.835 -0.667 1.072 sum 0.060 -31.947 1.766 31.996 Atomic orbital electron populations 1.69966 1.06103 1.26759 1.50568 1.25040 0.94890 0.99399 0.95214 0.86534 0.79792 0.83186 0.78137 1.20609 1.21201 1.19794 1.21171 0.93135 0.90640 1.50958 0.92379 1.19056 0.93854 0.90754 0.97685 1.21777 0.99947 0.90822 1.02065 1.23542 0.91191 0.83372 1.02192 1.86471 1.42713 1.14734 1.83129 1.23870 0.89059 0.85570 0.73517 1.90680 1.16794 1.86726 1.44489 1.20738 0.89994 0.76225 1.08167 1.48461 1.51428 1.23659 1.03154 1.76637 1.16449 1.05444 1.10011 1.24541 0.96390 0.96218 0.82849 1.46340 1.49907 1.25400 1.07179 1.16338 0.80980 0.81189 0.85429 1.91097 1.64166 1.72163 1.15020 1.21977 0.91677 0.88512 0.96833 1.21679 0.94489 1.02941 0.98903 1.20884 1.01906 0.99672 0.93484 1.21277 0.93524 1.02724 0.98459 1.20587 0.94212 0.93740 0.99189 0.92895 0.96251 0.96226 0.92024 0.92036 0.91505 0.91477 0.84412 0.84454 0.89070 0.88078 0.89586 0.90849 0.91571 0.91137 0.89793 0.91044 0.88372 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.31 5.53 -26.73 -0.15 -2.46 16 11 C 0.07 1.36 5.47 37.16 0.20 1.56 16 12 O -0.35 -6.14 10.22 -39.26 -0.40 -6.54 16 13 C 0.44 7.27 8.03 36.00 0.29 7.56 16 14 O -0.50 -10.00 16.18 -18.75 -0.30 -10.31 16 15 C 0.17 2.10 6.98 -5.19 -0.04 2.06 16 16 N -0.45 -6.16 3.13 -66.50 -0.21 -6.37 16 17 N -0.27 -3.26 12.50 33.24 0.42 -2.85 16 18 C 0.28 2.63 7.10 -153.50 -1.09 1.54 16 19 N -0.56 -5.88 2.76 -117.20 -0.32 -6.20 16 20 C 0.66 9.68 8.68 -87.36 -0.76 8.92 16 21 O -0.55 -9.75 17.75 5.09 0.09 -9.66 16 22 C 0.13 0.85 6.32 -3.57 -0.02 0.83 16 23 C -0.14 -0.79 5.63 -27.66 -0.16 -0.95 16 24 C -0.12 -0.45 5.19 -28.70 -0.15 -0.60 16 25 C -0.12 -0.54 5.57 -27.60 -0.15 -0.69 16 26 C -0.04 -0.17 5.81 -27.39 -0.16 -0.33 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 33 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 34 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.14 1.41 8.11 -51.93 -0.42 0.99 16 36 H 0.09 0.31 7.67 -51.93 -0.40 -0.09 16 37 H 0.10 0.72 8.01 -51.93 -0.42 0.31 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 40 H 0.07 0.13 7.80 -51.93 -0.41 -0.28 16 41 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 44 H 0.10 0.21 7.70 -51.93 -0.40 -0.19 16 45 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -38.07 377.35 -9.12 -47.19 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -7.06 Total: -5.51 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -2.73 Total: 4.24 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.62 Total: -41.91 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.61 Total: -26.51 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.07 -9.12 -47.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248600792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.109 kcal (2) G-P(sol) polarization free energy of solvation -38.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds