Wall clock time and date at job start Tue Mar 31 2020 14:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.33492 * 126.82600 * 2 1 4 4 N 1.20661 * 113.15266 * 180.32486 * 3 2 1 5 5 C 1.30008 * 112.30358 * 359.71289 * 4 3 2 6 6 C 1.50699 * 127.33752 * 180.02562 * 5 4 3 7 7 O 1.42905 * 109.46747 * 270.00000 * 6 5 4 8 8 C 1.37352 * 126.83301 * 179.84492 * 2 1 3 9 9 C 1.47402 * 128.56183 * 359.97438 * 8 2 1 10 10 O 1.21608 * 120.00054 * 269.67838 * 9 8 2 11 11 N 1.34772 * 120.00035 * 89.40464 * 9 8 2 12 12 C 1.46505 * 120.00143 * 180.27471 * 11 9 8 13 13 C 1.53000 * 109.47165 * 179.97438 * 12 11 9 14 14 C 1.53043 * 109.46146 * 295.02922 * 13 12 11 15 15 C 1.53190 * 109.31502 * 178.60249 * 14 13 12 16 16 N 1.46923 * 108.76358 * 54.65050 * 15 14 13 17 17 C 1.36944 * 120.62993 * 126.41203 * 16 15 14 18 18 H 1.07997 * 119.99462 * 332.60401 * 17 16 15 19 19 C 1.38805 * 120.00480 * 152.60891 * 17 16 15 20 20 N 1.31611 * 120.00424 * 159.34464 * 19 17 16 21 21 Si 1.86808 * 119.99712 * 339.34180 * 19 17 16 22 22 H 1.48500 * 109.46925 * 92.94496 * 21 19 17 23 23 H 1.48498 * 109.47093 * 212.94299 * 21 19 17 24 24 H 1.48501 * 109.46986 * 332.94195 * 21 19 17 25 25 C 1.46929 * 118.74408 * 306.38566 * 16 15 14 26 26 C 1.53040 * 109.46112 * 174.97498 * 13 12 11 27 27 H 1.09001 * 109.46936 * 270.15460 * 1 2 3 28 28 H 1.09004 * 109.46777 * 30.15484 * 1 2 3 29 29 H 1.09003 * 109.46590 * 150.15326 * 1 2 3 30 30 H 1.08999 * 109.47265 * 29.99599 * 6 5 4 31 31 H 1.08995 * 109.47547 * 150.00084 * 6 5 4 32 32 H 0.96704 * 113.99789 * 179.97438 * 7 6 5 33 33 H 0.97007 * 119.99984 * 0.27144 * 11 9 8 34 34 H 1.08994 * 109.47252 * 300.00098 * 12 11 9 35 35 H 1.09009 * 109.47022 * 60.00141 * 12 11 9 36 36 H 1.08998 * 109.45996 * 54.99707 * 13 12 11 37 37 H 1.08999 * 109.49668 * 298.56770 * 14 13 12 38 38 H 1.08997 * 109.50068 * 58.66092 * 14 13 12 39 39 H 1.09001 * 109.59725 * 294.86737 * 15 14 13 40 40 H 1.08995 * 109.70366 * 174.50710 * 15 14 13 41 41 H 0.97002 * 120.00557 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.58596 * 293.82590 * 25 16 15 43 43 H 1.08995 * 109.70350 * 173.46629 * 25 16 15 44 44 H 1.09003 * 109.49147 * 301.34066 * 26 13 12 45 45 H 1.09003 * 109.49704 * 61.39785 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3072 1.0686 0.0000 4 7 3.4796 0.7833 -0.0063 5 6 3.6747 -0.5020 -0.0055 6 6 4.9965 -1.2259 -0.0115 7 8 5.4071 -1.4565 -1.3607 8 6 2.3305 -1.0993 0.0030 9 6 1.9588 -2.5257 0.0074 10 8 1.8116 -3.1125 1.0623 11 7 1.7767 -3.1782 -1.1577 12 6 1.4014 -4.5944 -1.1534 13 6 1.2585 -5.0886 -2.5943 14 6 0.0928 -4.3621 -3.2692 15 6 -0.0254 -4.8338 -4.7219 16 7 -0.1384 -6.2986 -4.7354 17 6 -1.1748 -6.9124 -5.3869 18 1 -2.1165 -6.3978 -5.5086 19 6 -1.0152 -8.1960 -5.8907 20 7 -2.0710 -8.9400 -6.1431 21 14 0.6985 -8.8673 -6.2105 22 1 1.1691 -9.6128 -5.0155 23 1 0.6619 -9.7805 -7.3809 24 1 1.6268 -7.7422 -6.4894 25 6 0.8819 -7.0925 -4.0372 26 6 0.9899 -6.5952 -2.5923 27 1 -0.3633 0.0028 1.0277 28 1 -0.3633 0.8886 -0.5163 29 1 -0.3632 -0.8914 -0.5115 30 1 5.7454 -0.6191 0.4975 31 1 4.8905 -2.1802 0.5042 32 1 6.2524 -1.9193 -1.4409 33 1 1.8941 -2.7102 -1.9993 34 1 2.1727 -5.1731 -0.6452 35 1 0.4522 -4.7171 -0.6317 36 1 2.1790 -4.8844 -3.1412 37 1 -0.8321 -4.5858 -2.7375 38 1 0.2734 -3.2874 -3.2495 39 1 0.8618 -4.5307 -5.2780 40 1 -0.9115 -4.3946 -5.1800 41 1 -1.9595 -9.8371 -6.4948 42 1 1.8430 -6.9735 -4.5374 43 1 0.5956 -8.1442 -4.0412 44 1 1.8093 -7.1101 -2.0906 45 1 0.0568 -6.7978 -2.0665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261548365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:37 Heat of formation + Delta-G solvation = -34.124919 kcal Electronic energy + Delta-G solvation = -27710.295328 eV Core-core repulsion = 23730.587967 eV Total energy + Delta-G solvation = -3979.707361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.06076 -40.89510 -39.52944 -38.08654 -36.52459 -35.10849 -34.54308 -34.40823 -32.84228 -31.85991 -29.36438 -28.73896 -28.17753 -26.06970 -24.98192 -24.11387 -22.79705 -21.94058 -21.19844 -20.77628 -19.23674 -19.09358 -18.68809 -18.30902 -17.57288 -17.33093 -16.94558 -16.42457 -15.93491 -15.86143 -15.59669 -15.31641 -15.13094 -15.03953 -14.79457 -14.44079 -14.29266 -14.11659 -13.94041 -13.63873 -13.61274 -13.41192 -13.08560 -12.95399 -12.54112 -12.41353 -12.23867 -12.11090 -11.76745 -11.58988 -11.55060 -11.33324 -11.21936 -11.19703 -11.16142 -10.66282 -10.49550 -10.19977 -8.90531 -8.15209 -5.46209 0.20509 0.61254 1.22170 1.30938 1.42411 1.51379 1.70165 2.19404 2.42994 2.76822 3.08020 3.10237 3.38713 3.63003 3.70772 3.78240 3.86831 3.89076 3.96985 4.04402 4.24114 4.39920 4.40525 4.44644 4.56027 4.57406 4.59743 4.64245 4.69741 4.74256 4.78309 4.90124 5.02451 5.07048 5.09671 5.17765 5.22255 5.28521 5.30046 5.60368 5.89314 6.14537 6.35457 6.71605 6.95181 7.00125 7.04435 7.65826 8.05639 9.04957 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020683 B = 0.002792 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.419183 B =10026.897105 C =10510.132596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.036 3.964 3 O 0.102 5.898 4 N -0.357 5.357 5 C 0.041 3.959 6 C 0.156 3.844 7 O -0.579 6.579 8 C -0.265 4.265 9 C 0.606 3.394 10 O -0.565 6.565 11 N -0.696 5.696 12 C 0.134 3.866 13 C -0.080 4.080 14 C -0.118 4.118 15 C 0.141 3.859 16 N -0.622 5.622 17 C -0.247 4.247 18 H 0.050 0.950 19 C -0.038 4.038 20 N -0.960 5.960 21 Si 0.948 3.052 22 H -0.274 1.274 23 H -0.314 1.314 24 H -0.259 1.259 25 C 0.119 3.881 26 C -0.119 4.119 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.410 0.590 33 H 0.414 0.586 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.052 0.948 41 H 0.261 0.739 42 H 0.035 0.965 43 H 0.046 0.954 44 H 0.083 0.917 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.298 19.022 14.023 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.027 4.027 3 O 0.038 5.962 4 N -0.063 5.063 5 C -0.122 4.122 6 C 0.077 3.923 7 O -0.389 6.389 8 C -0.273 4.273 9 C 0.391 3.609 10 O -0.445 6.445 11 N -0.347 5.347 12 C 0.011 3.989 13 C -0.099 4.099 14 C -0.157 4.157 15 C 0.017 3.983 16 N -0.347 5.347 17 C -0.377 4.377 18 H 0.068 0.932 19 C -0.233 4.233 20 N -0.606 5.606 21 Si 0.777 3.223 22 H -0.200 1.200 23 H -0.243 1.243 24 H -0.184 1.184 25 C -0.005 4.005 26 C -0.159 4.159 27 H 0.128 0.872 28 H 0.136 0.864 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.262 0.738 33 H 0.251 0.749 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.101 0.899 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.403 19.822 14.551 28.006 hybrid contribution 0.581 -1.674 -0.744 1.922 sum 13.985 18.148 13.808 26.750 Atomic orbital electron populations 1.20752 0.80278 1.06727 1.06158 1.25259 0.97274 0.84003 0.96183 1.84534 1.10894 1.33349 1.67388 1.73595 0.96696 1.16921 1.19137 1.24753 0.96256 0.89003 1.02140 1.20218 0.88650 0.98307 0.85112 1.86449 1.45504 1.82075 1.24864 1.21865 0.93268 0.95152 1.16991 1.16863 0.76202 0.84063 0.83791 1.90821 1.52526 1.68701 1.32403 1.45908 1.68490 1.12000 1.08318 1.21415 1.00738 0.79861 0.96912 1.21180 0.99560 0.94893 0.94280 1.21953 0.97938 0.99797 0.96015 1.21124 0.99420 0.82142 0.95659 1.44514 1.27987 1.02457 1.59699 1.18882 0.91114 0.98576 1.29093 0.93185 1.25923 1.00206 0.97545 0.99598 1.69970 1.30907 1.09737 1.50028 0.85889 0.82050 0.77831 0.76508 1.20049 1.24327 1.18382 1.21384 0.91399 0.94996 0.92758 1.21878 1.01978 0.95551 0.96495 0.87221 0.86401 0.88311 0.89530 0.90287 0.73794 0.74932 0.91008 0.91651 0.89583 0.92891 0.89488 0.94585 0.92916 0.93043 0.94751 0.93554 0.89865 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.33 71.24 0.74 -0.01 16 2 C 0.04 0.61 7.55 25.48 0.19 0.80 16 3 O 0.10 1.98 11.06 76.99 0.85 2.83 16 4 N -0.36 -8.04 12.01 -44.79 -0.54 -8.58 16 5 C 0.04 0.87 7.22 45.16 0.33 1.20 16 6 C 0.16 2.47 7.65 71.24 0.55 3.02 16 7 O -0.58 -9.04 13.64 -148.98 -2.03 -11.07 16 8 C -0.27 -5.52 6.24 -18.75 -0.12 -5.64 16 9 C 0.61 13.97 7.60 86.66 0.66 14.62 16 10 O -0.57 -17.13 17.11 -4.06 -0.07 -17.20 16 11 N -0.70 -13.42 5.27 -466.39 -2.46 -15.87 16 12 C 0.13 2.86 5.06 86.38 0.44 3.30 16 13 C -0.08 -1.91 2.19 -10.77 -0.02 -1.94 16 14 C -0.12 -3.08 5.25 30.67 0.16 -2.91 16 15 C 0.14 4.93 6.52 86.36 0.56 5.50 16 16 N -0.62 -27.94 2.77 -699.12 -1.94 -29.88 16 17 C -0.25 -13.81 10.03 84.03 0.84 -12.96 16 18 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 19 C -0.04 -2.23 5.23 84.86 0.44 -1.78 16 20 N -0.96 -60.36 13.97 21.65 0.30 -60.06 16 21 Si 0.95 46.02 24.35 68.60 1.67 47.69 16 22 H -0.27 -12.50 6.62 99.48 0.66 -11.84 16 23 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 24 H -0.26 -11.92 6.63 99.48 0.66 -11.26 16 25 C 0.12 4.75 4.20 86.36 0.36 5.11 16 26 C -0.12 -3.59 5.36 30.67 0.16 -3.42 16 27 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.10 0.90 8.11 -2.39 -0.02 0.89 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.41 2.20 9.12 -74.05 -0.68 1.53 16 33 H 0.41 6.66 7.64 -92.70 -0.71 5.95 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.68 7.15 -2.39 -0.02 1.66 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 41 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.03 1.31 7.08 -2.39 -0.02 1.29 16 43 H 0.05 2.09 4.50 -2.39 -0.01 2.08 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -77.83 368.42 0.64 -77.19 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -0.45 Total: 10.06 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.29 Total: 4.88 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -4.63 Total: -114.39 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.25 Total: -25.44 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.67 Total: 47.69 kcal Total: -77.83 0.64 -77.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261548365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.065 kcal (2) G-P(sol) polarization free energy of solvation -77.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds