Wall clock time and date at job start Tue Mar 31 2020 13:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46897 * 111.00114 * 2 1 4 4 C 1.46895 * 111.00141 * 123.95790 * 2 1 3 5 5 C 1.53004 * 109.47032 * 170.00079 * 4 2 1 6 6 N 1.46504 * 109.47013 * 180.02562 * 5 4 2 7 7 C 1.34776 * 119.99835 * 180.02562 * 6 5 4 8 8 S 1.71197 * 120.00338 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99844 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00093 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96230 * 269.98024 * 11 10 9 13 13 C 1.38281 * 120.13505 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46814 * 90.00164 * 21 19 17 23 23 H 1.48501 * 109.47378 * 210.00272 * 21 19 17 24 24 H 1.48503 * 109.47143 * 330.00397 * 21 19 17 25 25 C 1.38073 * 119.96534 * 89.99825 * 11 10 9 26 26 H 1.09000 * 109.47429 * 296.04057 * 1 2 3 27 27 H 1.08999 * 109.47310 * 56.04575 * 1 2 3 28 28 H 1.09007 * 109.47149 * 176.04544 * 1 2 3 29 29 H 1.08999 * 109.47643 * 183.95217 * 3 2 1 30 30 H 1.09000 * 109.47337 * 303.96100 * 3 2 1 31 31 H 1.08998 * 109.46827 * 63.95523 * 3 2 1 32 32 H 1.08997 * 109.47275 * 50.00158 * 4 2 1 33 33 H 1.09002 * 109.47340 * 289.99577 * 4 2 1 34 34 H 1.08997 * 109.47025 * 59.99927 * 5 4 2 35 35 H 1.08995 * 109.46911 * 299.99659 * 5 4 2 36 36 H 0.97005 * 119.99925 * 359.97438 * 6 5 4 37 37 H 0.97004 * 119.99718 * 0.02562 * 9 7 6 38 38 H 1.09002 * 109.46490 * 60.00223 * 10 9 7 39 39 H 1.08992 * 109.46880 * 300.00477 * 10 9 7 40 40 H 1.08001 * 119.93314 * 0.02562 * 12 11 10 41 41 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.03256 * 180.31909 * 14 13 12 43 43 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.03547 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9553 0.9702 6 7 4.0294 -1.7198 2.1043 7 6 5.3441 -2.0089 2.1714 8 16 6.4005 -1.4833 0.9311 9 7 5.8271 -2.7118 3.2151 10 6 7.2561 -3.0265 3.2878 11 6 7.5338 -3.8143 4.5421 12 6 7.8558 -3.1552 5.7148 13 6 8.1118 -3.8746 6.8677 14 6 8.0403 -5.2538 6.8529 15 6 7.7229 -5.9186 5.6759 16 8 7.6577 -7.2745 5.6568 17 6 8.0292 -7.9210 6.7802 18 1 8.2816 -7.3599 7.6678 19 6 8.0870 -9.3063 6.7958 20 7 7.7800 -9.9897 5.7145 21 14 8.6023 -10.2020 8.3519 22 1 7.4021 -10.4905 9.1774 23 1 9.2726 -11.4769 7.9904 24 1 9.5419 -9.3506 9.1251 25 6 7.4669 -5.1932 4.5193 26 1 -0.3634 0.4511 0.9233 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0253 -0.0709 29 1 3.0827 1.3433 -0.0708 30 1 1.5897 1.9164 -0.8523 31 1 1.7043 1.8722 0.9233 32 1 1.5090 -1.7407 1.1755 33 1 1.7976 -0.2249 2.0628 34 1 3.9908 0.0193 0.9322 35 1 3.7023 -1.4965 0.0450 36 1 3.4308 -2.0174 2.8073 37 1 5.2284 -3.0099 3.9177 38 1 7.8314 -2.1008 3.3048 39 1 7.5428 -3.6166 2.4175 40 1 7.9073 -2.0765 5.7301 41 1 8.3633 -3.3572 7.7816 42 1 8.2353 -5.8149 7.7549 43 1 7.8208 -10.9588 5.7254 44 1 7.2162 -5.7072 3.6032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318448350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:53 Heat of formation + Delta-G solvation = 22.044222 kcal Electronic energy + Delta-G solvation = -23508.695677 eV Core-core repulsion = 19974.176864 eV Total energy + Delta-G solvation = -3534.518813 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.58056 -39.02679 -37.95543 -36.80654 -35.14423 -32.41785 -31.40290 -29.76415 -29.10904 -28.04659 -26.17667 -25.27680 -24.23877 -23.64190 -21.82890 -21.64241 -21.00754 -18.70476 -17.77001 -17.41846 -16.92142 -16.28712 -15.77211 -15.43818 -15.41369 -15.09857 -14.84635 -14.69027 -14.43778 -14.24184 -13.96236 -13.69190 -13.43173 -12.85422 -12.75430 -12.54881 -12.46567 -12.21811 -12.10762 -11.86376 -11.76157 -11.44890 -11.15671 -11.08805 -10.98329 -10.91890 -10.77726 -10.52774 -9.49311 -9.16527 -8.95983 -8.90364 -8.39913 -7.85241 -7.45461 -7.37741 -6.55391 -4.15214 1.41850 1.64753 2.04890 2.17323 2.56332 3.05327 3.07196 3.12004 3.40523 3.69681 3.86952 4.31577 4.41420 4.54519 4.72848 4.77951 4.86768 4.96348 4.99151 5.12753 5.14058 5.16639 5.39431 5.41254 5.44250 5.56499 5.61658 5.65812 5.73552 5.77315 5.86227 5.98069 6.15186 6.38080 6.44767 6.46445 6.48080 6.71172 6.73274 6.90911 7.07220 7.17414 7.22621 7.28156 7.60812 7.88163 8.89642 9.56967 10.62061 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.002055 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.121298 B =13620.455378 C =14231.724639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.016 3.984 4 C 0.041 3.959 5 C 0.129 3.871 6 N -0.692 5.692 7 C 0.564 3.436 8 S -0.650 6.650 9 N -0.670 5.670 10 C 0.173 3.827 11 C -0.080 4.080 12 C -0.194 4.194 13 C -0.076 4.076 14 C -0.223 4.223 15 C 0.149 3.851 16 O -0.174 6.174 17 C -0.395 4.395 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.168 4.168 26 H 0.026 0.974 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.396 0.604 37 H 0.400 0.600 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.272 0.728 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.627 17.979 -3.994 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.132 4.132 4 C -0.088 4.088 5 C 0.005 3.995 6 N -0.323 5.323 7 C 0.202 3.798 8 S -0.526 6.526 9 N -0.298 5.298 10 C 0.051 3.949 11 C -0.081 4.081 12 C -0.213 4.213 13 C -0.094 4.094 14 C -0.243 4.243 15 C 0.095 3.905 16 O -0.077 6.077 17 C -0.471 4.471 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.493 5.493 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.188 4.188 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.232 0.768 37 H 0.236 0.764 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.146 0.854 43 H 0.081 0.919 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.766 17.702 -5.589 21.978 hybrid contribution -1.115 -0.652 2.980 3.248 sum -12.880 17.050 -2.609 21.527 Atomic orbital electron populations 1.22406 0.86562 1.02606 1.00757 1.61802 1.08234 1.14361 1.42037 1.22540 1.01726 0.88212 1.00699 1.22294 0.94839 0.99307 0.92338 1.21595 0.91935 0.97403 0.88541 1.44802 1.05479 1.55730 1.26311 1.22122 0.86496 0.82271 0.88884 1.93476 1.54729 1.70095 1.34335 1.45308 1.11815 1.51479 1.21210 1.20567 0.77421 1.00243 0.96657 1.19260 1.02238 0.92709 0.93891 1.20500 1.09410 0.98508 0.92924 1.20756 0.97825 0.93584 0.97269 1.21264 1.09434 0.94543 0.99026 1.19321 0.92985 0.85249 0.92942 1.83983 1.73083 1.12306 1.38372 1.21328 1.47126 0.89433 0.89179 0.88995 1.25313 0.96644 0.95541 0.98967 1.70030 1.44075 1.07707 1.27495 0.85700 0.78927 0.78994 0.79750 1.19848 1.20139 1.19132 1.20115 1.09109 0.92371 0.97226 0.95542 0.90908 0.91109 0.90371 0.90990 0.95493 0.89990 0.94169 0.89560 0.88615 0.76847 0.76375 0.88935 0.88837 0.87411 0.87193 0.85384 0.91855 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.57 60.06 0.57 0.71 16 2 N -0.54 -3.78 5.02 -251.27 -1.26 -5.04 16 3 C 0.02 0.10 9.32 60.06 0.56 0.66 16 4 C 0.04 0.26 5.07 -3.82 -0.02 0.24 16 5 C 0.13 1.10 5.05 -4.04 -0.02 1.08 16 6 N -0.69 -6.02 5.56 -62.03 -0.34 -6.37 16 7 C 0.56 6.91 7.98 -86.91 -0.69 6.21 16 8 S -0.65 -10.77 27.77 -107.50 -2.99 -13.76 16 9 N -0.67 -7.80 5.55 -63.21 -0.35 -8.15 16 10 C 0.17 2.38 5.25 -5.19 -0.03 2.36 16 11 C -0.08 -1.27 5.25 -104.65 -0.55 -1.82 16 12 C -0.19 -2.99 9.70 -39.53 -0.38 -3.38 16 13 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 14 C -0.22 -4.49 9.17 -39.40 -0.36 -4.85 16 15 C 0.15 3.37 6.65 -39.11 -0.26 3.11 16 16 O -0.17 -4.75 9.76 0.05 0.00 -4.75 16 17 C -0.39 -10.59 9.49 30.89 0.29 -10.30 16 18 H 0.09 2.27 5.21 -52.49 -0.27 1.99 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.50 13.67 55.48 0.76 -23.74 16 21 Si 0.94 19.84 29.55 -169.99 -5.02 14.81 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 C -0.17 -3.26 9.65 -39.39 -0.38 -3.64 16 26 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 28 H 0.07 0.36 8.12 -51.93 -0.42 -0.07 16 29 H 0.08 0.53 6.47 -51.93 -0.34 0.20 16 30 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 33 H 0.04 0.23 8.12 -51.93 -0.42 -0.19 16 34 H 0.09 0.83 6.40 -51.93 -0.33 0.49 16 35 H 0.10 1.02 7.99 -51.93 -0.42 0.60 16 36 H 0.40 2.36 8.49 -40.82 -0.35 2.01 16 37 H 0.40 3.94 8.48 -40.82 -0.35 3.60 16 38 H 0.09 1.28 7.93 -51.93 -0.41 0.86 16 39 H 0.09 1.40 7.93 -51.93 -0.41 0.99 16 40 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 43 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 379.74 15.07 5.72 5.72 Total: -1.00 -32.38 379.74 -11.77 -44.15 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.52 Total: 7.42 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.76 Total: -10.30 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -1.20 Total: -43.30 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: 0.00 Total: -4.75 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: -10.77 SS G_CDS: -2.99 Total: -13.76 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.38 -11.77 -44.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318448350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.192 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds