Wall clock time and date at job start Tue Mar 31 2020 13:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46897 * 111.00114 * 2 1 4 4 C 1.46895 * 111.00141 * 123.95790 * 2 1 3 5 5 C 1.53004 * 109.47032 * 170.00079 * 4 2 1 6 6 N 1.46504 * 109.47013 * 180.02562 * 5 4 2 7 7 C 1.34776 * 119.99835 * 180.02562 * 6 5 4 8 8 S 1.71197 * 120.00338 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99844 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00093 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96230 * 269.98024 * 11 10 9 13 13 C 1.38281 * 120.13505 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46814 * 90.00164 * 21 19 17 23 23 H 1.48501 * 109.47378 * 210.00272 * 21 19 17 24 24 H 1.48503 * 109.47143 * 330.00397 * 21 19 17 25 25 C 1.38073 * 119.96534 * 89.99825 * 11 10 9 26 26 H 1.09000 * 109.47429 * 296.04057 * 1 2 3 27 27 H 1.08999 * 109.47310 * 56.04575 * 1 2 3 28 28 H 1.09007 * 109.47149 * 176.04544 * 1 2 3 29 29 H 1.08999 * 109.47643 * 183.95217 * 3 2 1 30 30 H 1.09000 * 109.47337 * 303.96100 * 3 2 1 31 31 H 1.08998 * 109.46827 * 63.95523 * 3 2 1 32 32 H 1.08997 * 109.47275 * 50.00158 * 4 2 1 33 33 H 1.09002 * 109.47340 * 289.99577 * 4 2 1 34 34 H 1.08997 * 109.47025 * 59.99927 * 5 4 2 35 35 H 1.08995 * 109.46911 * 299.99659 * 5 4 2 36 36 H 0.97005 * 119.99925 * 359.97438 * 6 5 4 37 37 H 0.97004 * 119.99718 * 0.02562 * 9 7 6 38 38 H 1.09002 * 109.46490 * 60.00223 * 10 9 7 39 39 H 1.08992 * 109.46880 * 300.00477 * 10 9 7 40 40 H 1.08001 * 119.93314 * 0.02562 * 12 11 10 41 41 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.03256 * 180.31909 * 14 13 12 43 43 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.03547 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9553 0.9702 6 7 4.0294 -1.7198 2.1043 7 6 5.3441 -2.0089 2.1714 8 16 6.4005 -1.4833 0.9311 9 7 5.8271 -2.7118 3.2151 10 6 7.2561 -3.0265 3.2878 11 6 7.5338 -3.8143 4.5421 12 6 7.8558 -3.1552 5.7148 13 6 8.1118 -3.8746 6.8677 14 6 8.0403 -5.2538 6.8529 15 6 7.7229 -5.9186 5.6759 16 8 7.6577 -7.2745 5.6568 17 6 8.0292 -7.9210 6.7802 18 1 8.2816 -7.3599 7.6678 19 6 8.0870 -9.3063 6.7958 20 7 7.7800 -9.9897 5.7145 21 14 8.6023 -10.2020 8.3519 22 1 7.4021 -10.4905 9.1774 23 1 9.2726 -11.4769 7.9904 24 1 9.5419 -9.3506 9.1251 25 6 7.4669 -5.1932 4.5193 26 1 -0.3634 0.4511 0.9233 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0253 -0.0709 29 1 3.0827 1.3433 -0.0708 30 1 1.5897 1.9164 -0.8523 31 1 1.7043 1.8722 0.9233 32 1 1.5090 -1.7407 1.1755 33 1 1.7976 -0.2249 2.0628 34 1 3.9908 0.0193 0.9322 35 1 3.7023 -1.4965 0.0450 36 1 3.4308 -2.0174 2.8073 37 1 5.2284 -3.0099 3.9177 38 1 7.8314 -2.1008 3.3048 39 1 7.5428 -3.6166 2.4175 40 1 7.9073 -2.0765 5.7301 41 1 8.3633 -3.3572 7.7816 42 1 8.2353 -5.8149 7.7549 43 1 7.8208 -10.9588 5.7254 44 1 7.2162 -5.7072 3.6032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318448350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:53 Heat of formation + Delta-G solvation = -0.391259 kcal Electronic energy + Delta-G solvation = -23509.668553 eV Core-core repulsion = 19974.176864 eV Total energy + Delta-G solvation = -3535.491689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98767 -40.15200 -38.86238 -38.11844 -36.18098 -34.31296 -32.65268 -30.97912 -30.30168 -28.50221 -27.62417 -26.87861 -25.02764 -24.63272 -23.30700 -22.55127 -22.22316 -19.95673 -19.25916 -18.78454 -18.21519 -16.99097 -16.80431 -16.55630 -16.53281 -16.32010 -16.05451 -15.80036 -15.66357 -15.45149 -15.13988 -14.90207 -14.63142 -14.27721 -14.00442 -13.59863 -13.30291 -13.24805 -13.04324 -12.77028 -12.62827 -12.54435 -12.48272 -12.40887 -12.31450 -12.23373 -12.13354 -11.92269 -11.23539 -10.82905 -10.10060 -9.85085 -9.38752 -9.09977 -9.07354 -8.70797 -8.48350 -6.16989 0.26640 0.36708 0.66996 0.90315 1.35203 1.43119 1.52414 1.54869 2.16158 2.48442 2.84282 3.11986 3.13703 3.35663 3.70967 3.75770 3.97868 4.06559 4.27324 4.28038 4.37444 4.38063 4.48696 4.49556 4.59440 4.64912 4.66398 4.70353 4.75088 4.87245 4.93996 4.98490 5.03721 5.08408 5.09919 5.22297 5.42594 5.58793 5.66488 5.68614 5.83237 5.98572 5.99919 6.01306 6.12906 6.35036 6.96434 7.76059 8.74470 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.002055 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.121298 B =13620.455378 C =14231.724639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.559 5.559 3 C 0.017 3.983 4 C 0.050 3.950 5 C 0.135 3.865 6 N -0.666 5.666 7 C 0.585 3.415 8 S -0.732 6.732 9 N -0.660 5.660 10 C 0.185 3.815 11 C -0.063 4.063 12 C -0.165 4.165 13 C -0.070 4.070 14 C -0.231 4.231 15 C 0.111 3.889 16 O -0.231 6.231 17 C -0.412 4.412 18 H 0.104 0.896 19 C -0.024 4.024 20 N -0.920 5.920 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.252 1.252 25 C -0.178 4.178 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.416 0.584 37 H 0.413 0.587 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.272 0.728 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.621 20.749 -1.962 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.283 5.283 3 C -0.131 4.131 4 C -0.079 4.079 5 C 0.011 3.989 6 N -0.297 5.297 7 C 0.219 3.781 8 S -0.609 6.609 9 N -0.288 5.288 10 C 0.062 3.938 11 C -0.064 4.064 12 C -0.184 4.184 13 C -0.088 4.088 14 C -0.250 4.250 15 C 0.061 3.939 16 O -0.138 6.138 17 C -0.488 4.488 18 H 0.122 0.878 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.837 3.163 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.176 1.176 25 C -0.197 4.197 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.255 0.745 37 H 0.252 0.748 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.816 20.542 -3.534 24.468 hybrid contribution -0.903 -1.128 2.266 2.687 sum -13.719 19.413 -1.268 23.805 Atomic orbital electron populations 1.22432 0.85453 1.03017 1.01343 1.61789 1.09319 1.14752 1.42477 1.22521 1.01071 0.88130 1.01335 1.22213 0.92821 1.00024 0.92846 1.21555 0.93594 0.96384 0.87408 1.44726 1.04352 1.54020 1.26588 1.21555 0.87015 0.81822 0.87657 1.93697 1.56774 1.73007 1.37392 1.44991 1.11303 1.51155 1.21380 1.20350 0.78635 0.99969 0.94856 1.19394 1.00690 0.91171 0.95180 1.21019 1.05245 1.00506 0.91598 1.21170 0.96265 0.91977 0.99356 1.21397 1.09494 0.96295 0.97855 1.19864 0.94750 0.84308 0.95009 1.83950 1.76119 1.14614 1.39107 1.21816 1.47126 0.90150 0.89737 0.87842 1.26583 0.96627 0.96239 1.02667 1.70180 1.47352 1.07917 1.30336 0.84597 0.78955 0.77464 0.75294 1.18756 1.19898 1.17550 1.20240 1.09545 0.93856 0.96106 0.94862 0.90433 0.90804 0.91436 0.90394 0.94835 0.89079 0.92778 0.90352 0.90701 0.74496 0.74762 0.87899 0.90289 0.83288 0.83305 0.86142 0.91875 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.57 127.69 1.22 1.44 16 2 N -0.56 -6.87 5.02 -948.88 -4.76 -11.63 16 3 C 0.02 0.19 9.32 127.69 1.19 1.38 16 4 C 0.05 0.52 5.07 86.31 0.44 0.96 16 5 C 0.13 2.10 5.05 86.38 0.44 2.54 16 6 N -0.67 -9.94 5.56 -350.16 -1.95 -11.89 16 7 C 0.58 13.17 7.98 179.05 1.43 14.60 16 8 S -0.73 -24.02 27.77 -56.49 -1.57 -25.59 16 9 N -0.66 -13.54 5.55 -353.91 -1.97 -15.51 16 10 C 0.18 4.66 5.25 85.63 0.45 5.11 16 11 C -0.06 -1.86 5.25 -19.88 -0.10 -1.96 16 12 C -0.16 -4.30 9.70 22.30 0.22 -4.08 16 13 C -0.07 -2.05 10.04 22.25 0.22 -1.83 16 14 C -0.23 -9.09 9.17 22.39 0.21 -8.89 16 15 C 0.11 5.14 6.65 22.58 0.15 5.29 16 16 O -0.23 -13.34 9.76 -22.74 -0.22 -13.56 16 17 C -0.41 -23.08 9.49 67.92 0.64 -22.44 16 18 H 0.10 5.25 5.21 -2.91 -0.02 5.23 16 19 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 20 N -0.92 -55.44 13.67 21.61 0.30 -55.14 16 21 Si 1.02 41.58 29.55 68.60 2.03 43.60 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 25 C -0.18 -6.91 9.65 22.39 0.22 -6.69 16 26 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.08 0.60 8.12 -2.39 -0.02 0.58 16 28 H 0.07 0.59 8.12 -2.38 -0.02 0.57 16 29 H 0.07 0.88 6.47 -2.39 -0.02 0.86 16 30 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16 31 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.09 0.81 8.06 -2.39 -0.02 0.79 16 33 H 0.05 0.44 8.12 -2.39 -0.02 0.42 16 34 H 0.08 1.42 6.40 -2.39 -0.02 1.41 16 35 H 0.07 1.56 7.99 -2.39 -0.02 1.54 16 36 H 0.42 3.45 8.49 -92.70 -0.79 2.66 16 37 H 0.41 6.68 8.48 -92.71 -0.79 5.90 16 38 H 0.10 2.50 7.93 -2.39 -0.02 2.48 16 39 H 0.08 2.31 7.93 -2.39 -0.02 2.29 16 40 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 42 H 0.12 4.87 5.64 -2.91 -0.02 4.85 16 43 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -76.44 379.74 -1.51 -77.94 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.55 Total: 27.18 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 7.18 Total: -15.40 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -8.38 Total: -94.17 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.22 Total: -13.56 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: -24.02 SS G_CDS: -1.57 Total: -25.59 kcal Total: -76.44 -1.51 -77.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318448350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.552 kcal (2) G-P(sol) polarization free energy of solvation -76.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds