Wall clock time and date at job start Tue Mar 31 2020 14:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00341 * 2 1 4 4 C 1.52993 * 109.47490 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47363 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47206 * 179.97438 * 5 4 3 7 7 C 1.42900 * 114.00084 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47031 * 180.02562 * 7 6 5 9 9 O 1.21274 * 120.00375 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.08998 * 109.47091 * 60.00339 * 1 2 3 28 28 H 1.09002 * 109.47175 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46849 * 299.99795 * 1 2 3 30 30 H 1.09003 * 109.46983 * 59.99519 * 3 2 1 31 31 H 1.09004 * 109.46957 * 300.00516 * 3 2 1 32 32 H 1.08998 * 109.47146 * 59.99932 * 4 3 2 33 33 H 1.09004 * 109.47296 * 300.00130 * 4 3 2 34 34 H 1.08998 * 109.47103 * 59.99835 * 5 4 3 35 35 H 1.08998 * 109.46978 * 299.99802 * 5 4 3 36 36 H 1.09008 * 109.46498 * 60.00448 * 7 6 5 37 37 H 1.08998 * 109.47598 * 300.00755 * 7 6 5 38 38 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 40 40 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 43 43 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5823 2.4694 0.0000 7 6 6.2649 3.7249 0.0000 8 6 7.7531 3.4876 -0.0006 9 8 8.1866 2.3549 -0.0015 10 7 8.6024 4.5341 -0.0002 11 6 10.0491 4.3035 -0.0014 12 6 10.7689 5.6275 0.0000 13 6 11.0985 6.2359 -1.1978 14 6 11.7594 7.4506 -1.2007 15 6 12.0866 8.0631 -0.0068 16 6 11.7622 7.4522 1.1972 17 8 12.0879 8.0489 2.3722 18 6 12.8309 9.1720 2.3032 19 1 13.0706 9.6026 1.3422 20 6 13.2870 9.7740 3.4660 21 7 12.9954 9.2492 4.6365 22 14 14.3169 11.3295 3.3702 23 1 14.5031 11.7131 1.9478 24 1 13.6241 12.4270 4.0919 25 1 15.6418 11.0852 3.9950 26 6 11.0989 6.2318 1.1968 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8567 0.6438 -0.8908 33 1 3.8575 0.6435 0.8891 34 1 3.8365 3.1227 0.8904 35 1 3.8359 3.1237 -0.8895 36 1 5.9870 4.2894 0.8901 37 1 5.9869 4.2896 -0.8899 38 1 8.2556 5.4401 0.0009 39 1 10.3263 3.7397 -0.8922 40 1 10.3275 3.7380 0.8878 41 1 10.8391 5.7613 -2.1326 42 1 12.0157 7.9229 -2.1374 43 1 12.5983 9.0143 -0.0096 44 1 13.3148 9.6701 5.4499 45 1 10.8419 5.7559 2.1316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319835818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:48 Heat of formation + Delta-G solvation = -159.007853 kcal Electronic energy + Delta-G solvation = -25264.632256 eV Core-core repulsion = 21247.216813 eV Total energy + Delta-G solvation = -4017.415443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.09132 -40.58381 -39.20513 -38.62064 -38.24978 -35.78189 -34.28704 -33.83059 -32.39867 -30.84864 -29.46938 -27.86380 -27.40534 -26.37541 -25.39046 -23.26562 -22.67515 -22.45010 -21.65071 -19.65712 -18.93854 -18.26304 -17.83293 -17.67465 -17.26814 -16.97026 -16.75518 -16.52212 -16.43256 -16.08456 -15.79791 -15.65217 -15.52176 -15.23211 -14.96451 -14.51357 -14.30099 -13.96472 -13.82243 -13.70328 -13.38994 -13.03750 -13.02973 -12.73265 -12.57482 -12.43253 -12.35933 -12.27410 -12.08447 -12.07176 -11.95953 -11.21585 -10.99040 -10.80932 -10.69024 -10.63622 -10.16228 -9.75698 -9.03334 -8.46984 -6.15534 0.37190 0.70600 1.36339 1.43871 1.54246 1.55856 1.83527 2.17441 2.60745 2.85624 3.14267 3.31422 3.40763 3.73861 3.85999 3.92501 4.09396 4.12382 4.20013 4.27217 4.28504 4.32221 4.41424 4.44750 4.45631 4.52944 4.53156 4.56932 4.58683 4.67807 4.73718 4.86451 5.01694 5.08234 5.11084 5.12289 5.25752 5.31937 5.62501 5.70765 5.71977 6.01751 6.05245 6.16761 6.23155 6.53379 6.98067 7.19113 7.78220 8.76251 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022343 B = 0.001635 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.894058 B =17119.319618 C =17854.251719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.066 3.934 4 C -0.119 4.119 5 C 0.064 3.936 6 O -0.399 6.399 7 C 0.048 3.952 8 C 0.509 3.491 9 O -0.576 6.576 10 N -0.709 5.709 11 C 0.175 3.825 12 C -0.059 4.059 13 C -0.167 4.167 14 C -0.069 4.069 15 C -0.234 4.234 16 C 0.112 3.888 17 O -0.233 6.233 18 C -0.412 4.412 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.249 1.249 24 H -0.269 1.269 25 H -0.271 1.271 26 C -0.180 4.180 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.416 0.584 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.272 0.728 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.037 -7.774 -13.675 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.010 4.010 4 C -0.157 4.157 5 C -0.012 4.012 6 O -0.318 6.318 7 C -0.031 4.031 8 C 0.296 3.704 9 O -0.455 6.455 10 N -0.363 5.363 11 C 0.051 3.949 12 C -0.060 4.060 13 C -0.186 4.186 14 C -0.087 4.087 15 C -0.253 4.253 16 C 0.062 3.938 17 O -0.140 6.140 18 C -0.488 4.488 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.172 1.172 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.200 4.200 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.253 0.747 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.167 0.833 42 H 0.167 0.833 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.555 -8.961 -13.235 26.038 hybrid contribution 0.336 1.391 0.662 1.576 sum -20.220 -7.570 -12.573 24.985 Atomic orbital electron populations 1.22934 0.79175 1.03816 1.01105 1.87835 1.21758 1.29025 1.95684 1.22405 0.92143 0.84558 1.01880 1.21336 0.93897 0.97031 1.03450 1.22519 0.79108 0.97071 1.02545 1.87949 1.19570 1.28460 1.95851 1.22316 0.87746 0.87381 1.05625 1.20938 0.89629 0.84399 0.75460 1.90712 1.79786 1.24435 1.50575 1.45873 1.05748 1.09871 1.74833 1.20020 0.79084 0.92961 1.02794 1.19419 0.98906 0.95427 0.92200 1.21003 1.03514 0.96653 0.97417 1.21163 0.95635 0.94890 0.96993 1.21379 1.08498 1.02815 0.92611 1.19856 0.94517 0.92786 0.86658 1.83947 1.63691 1.39190 1.27190 1.21864 1.30375 1.00988 0.95569 0.87863 1.26568 0.98767 1.03152 0.93517 1.70188 1.45544 1.41707 0.98444 0.84538 0.76960 0.75094 0.79691 1.17245 1.19411 1.19636 1.20217 1.06371 0.94775 0.98649 0.92803 0.88860 0.92966 0.91645 0.91347 0.91520 0.91879 0.91042 0.90512 0.87509 0.86623 0.74709 0.89530 0.92068 0.83325 0.83306 0.86191 0.91909 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -7.11 10.70 -148.98 -1.59 -8.71 16 3 C 0.07 0.81 5.94 71.98 0.43 1.24 16 4 C -0.12 -1.90 5.95 30.59 0.18 -1.72 16 5 C 0.06 0.86 5.94 71.98 0.43 1.28 16 6 O -0.40 -8.80 9.88 -129.94 -1.28 -10.08 16 7 C 0.05 0.80 6.42 71.24 0.46 1.26 16 8 C 0.51 12.86 7.91 87.66 0.69 13.55 16 9 O -0.58 -20.59 16.50 16.02 0.26 -20.32 16 10 N -0.71 -15.96 5.55 -466.79 -2.59 -18.55 16 11 C 0.17 4.67 5.80 85.63 0.50 5.17 16 12 C -0.06 -1.80 5.25 -19.88 -0.10 -1.91 16 13 C -0.17 -4.53 9.70 22.30 0.22 -4.31 16 14 C -0.07 -2.08 10.04 22.25 0.22 -1.86 16 15 C -0.23 -9.38 9.17 22.39 0.21 -9.17 16 16 C 0.11 5.28 6.65 22.58 0.15 5.43 16 17 O -0.23 -13.63 9.76 -22.74 -0.22 -13.85 16 18 C -0.41 -23.26 9.49 67.92 0.64 -22.62 16 19 H 0.10 5.30 5.21 -2.91 -0.02 5.29 16 20 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 21 N -0.92 -55.68 13.67 21.61 0.30 -55.39 16 22 Si 1.02 41.78 29.55 68.60 2.03 43.81 16 23 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 24 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 26 C -0.18 -7.20 9.65 22.39 0.22 -6.99 16 27 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.42 7.37 8.46 -92.71 -0.78 6.58 16 39 H 0.09 2.16 8.09 -2.39 -0.02 2.14 16 40 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 41 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 43 H 0.12 4.93 5.64 -2.91 -0.02 4.91 16 44 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 45 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -80.35 388.84 3.06 -77.29 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.21 Total: 25.74 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 5.95 Total: -19.94 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -2.29 Total: -73.94 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -2.84 Total: -52.96 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -80.35 3.06 -77.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319835818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.716 kcal (2) G-P(sol) polarization free energy of solvation -80.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds