Wall clock time and date at job start Tue Mar 31 2020 14:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00073 * 2 1 4 4 H 1.48497 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47245 * 300.00263 * 3 2 1 6 6 H 1.48503 * 109.46809 * 60.00259 * 3 2 1 7 7 C 1.37875 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00149 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46848 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46641 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47012 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99949 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99863 * 180.02562 * 13 12 11 16 16 C 1.46938 * 120.68434 * 359.97438 * 15 13 12 17 17 C 1.53181 * 108.83670 * 234.13259 * 16 15 13 18 18 C 1.53122 * 109.29764 * 304.83897 * 17 16 15 19 19 C 1.52471 * 109.66747 * 60.47833 * 18 17 16 20 20 C 1.47029 * 120.67584 * 180.02562 * 15 13 12 21 21 N 1.46802 * 110.41406 * 63.10744 * 19 18 17 22 22 C 1.34696 * 106.41177 * 118.92269 * 21 19 18 23 23 O 1.21543 * 123.78944 * 179.85167 * 22 21 19 24 24 N 1.33869 * 112.41977 * 359.58484 * 22 21 19 25 25 C 1.34921 * 111.60696 * 0.26874 * 24 22 21 26 26 O 1.21228 * 127.26066 * 180.02562 * 25 24 22 27 27 H 0.96996 * 120.00337 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46861 * 60.00759 * 9 7 2 29 29 H 1.08990 * 109.47586 * 300.00558 * 9 7 2 30 30 H 1.08991 * 109.46973 * 60.00307 * 10 9 7 31 31 H 1.09003 * 109.47071 * 300.00164 * 10 9 7 32 32 H 1.09001 * 109.47346 * 60.00179 * 11 10 9 33 33 H 1.09003 * 109.47031 * 299.99713 * 11 10 9 34 34 H 1.09002 * 109.47670 * 59.99665 * 12 11 10 35 35 H 1.09003 * 109.47053 * 299.99552 * 12 11 10 36 36 H 1.09004 * 109.57771 * 114.32223 * 16 15 13 37 37 H 1.09002 * 109.57626 * 353.94230 * 16 15 13 38 38 H 1.08999 * 109.50217 * 184.89694 * 17 16 15 39 39 H 1.08998 * 109.53130 * 64.80718 * 17 16 15 40 40 H 1.08992 * 109.44040 * 300.41547 * 18 17 16 41 41 H 1.09007 * 109.40484 * 180.51272 * 18 17 16 42 42 H 1.08995 * 109.57398 * 7.42220 * 20 15 13 43 43 H 1.09008 * 109.56969 * 247.05136 * 20 15 13 44 44 H 0.97001 * 126.78974 * 298.79810 * 21 19 18 45 45 H 0.97001 * 124.19565 * 180.27434 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0005 13 6 1.7209 -7.4552 -0.0018 14 8 0.5081 -7.4552 -0.0026 15 7 2.3948 -8.6223 -0.0010 16 6 3.8641 -8.6398 0.0006 17 6 4.3498 -9.4952 -1.1737 18 6 3.7151 -10.8858 -1.0834 19 6 2.1969 -10.7623 -1.1514 20 6 1.6748 -9.9043 -0.0028 21 7 1.7861 -10.2033 -2.4452 22 6 1.0151 -11.1368 -3.0356 23 8 0.5018 -10.9970 -4.1283 24 7 0.8826 -12.2380 -2.2860 25 6 1.5540 -12.1297 -1.1208 26 8 1.6267 -12.9554 -0.2361 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8895 30 1 2.8718 -3.6045 0.8894 31 1 2.8719 -3.6044 -0.8905 32 1 0.8538 -5.0446 -0.8914 33 1 0.8532 -5.0451 0.8886 34 1 3.1005 -6.0924 0.8899 35 1 3.1017 -6.0922 -0.8901 36 1 4.2233 -9.0671 0.9369 37 1 4.2416 -7.6230 -0.1075 38 1 5.4351 -9.5873 -1.1324 39 1 4.0602 -9.0233 -2.1126 40 1 3.9991 -11.3536 -0.1408 41 1 4.0666 -11.4989 -1.9132 42 1 0.6083 -9.7239 -0.1373 43 1 1.8434 -10.4191 0.9432 44 1 2.0216 -9.3330 -2.8031 45 1 0.3677 -13.0172 -2.5482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323068166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:41 Heat of formation + Delta-G solvation = -98.991581 kcal Electronic energy + Delta-G solvation = -27533.705048 eV Core-core repulsion = 23551.184857 eV Total energy + Delta-G solvation = -3982.520191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.15719 -40.29735 -39.13013 -37.92833 -36.24727 -35.00292 -34.24896 -32.72560 -32.67892 -31.04710 -29.62944 -26.58787 -25.63802 -24.83277 -23.42799 -22.59162 -22.21671 -21.01473 -20.07982 -19.28695 -18.51633 -17.37005 -17.17816 -17.01505 -16.48511 -16.29638 -16.15794 -15.86835 -15.72501 -15.04885 -14.84785 -14.66028 -14.44279 -14.41198 -13.75320 -13.53281 -13.33984 -13.12887 -12.68247 -12.26850 -12.09944 -11.75317 -11.66942 -11.63967 -11.56969 -11.35231 -11.02540 -10.87170 -10.75011 -10.59464 -10.50694 -10.44491 -10.08910 -9.91749 -9.65366 -9.26308 -9.03886 -8.99864 -8.32592 -5.97036 -3.99701 1.02131 1.90065 2.44599 2.50054 2.54683 2.70791 3.31823 3.39145 3.40607 3.42655 3.82032 3.89475 4.28740 4.31639 4.44900 4.49594 4.72668 4.78976 4.88535 5.03941 5.08278 5.15788 5.21123 5.24868 5.27875 5.33549 5.38505 5.50707 5.56034 5.74958 5.99310 6.07097 6.24040 6.28672 6.43614 6.48907 6.78611 6.83692 6.94577 7.04777 7.17453 7.68087 7.72158 7.87371 8.00551 8.04301 8.45618 9.08286 9.64200 11.14333 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.002226 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.371331 B =12577.862958 C =12950.180297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.105 4.105 12 C -0.136 4.136 13 C 0.516 3.484 14 O -0.526 6.526 15 N -0.620 5.620 16 C 0.101 3.899 17 C -0.134 4.134 18 C -0.113 4.113 19 C 0.106 3.894 20 C 0.119 3.881 21 N -0.709 5.709 22 C 0.704 3.296 23 O -0.538 6.538 24 N -0.679 5.679 25 C 0.539 3.461 26 O -0.459 6.459 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.442 0.558 45 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.779 -27.691 -1.583 29.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.143 4.143 12 C -0.176 4.176 13 C 0.306 3.694 14 O -0.400 6.400 15 N -0.356 5.356 16 C -0.022 4.022 17 C -0.172 4.172 18 C -0.152 4.152 19 C 0.014 3.986 20 C -0.006 4.006 21 N -0.374 5.374 22 C 0.403 3.597 23 O -0.411 6.411 24 N -0.350 5.350 25 C 0.323 3.677 26 O -0.327 6.327 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.123 0.877 43 H 0.111 0.889 44 H 0.288 0.712 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 9.765 -27.856 -1.642 29.563 hybrid contribution 0.330 0.857 -0.310 0.970 sum 10.095 -26.998 -1.952 28.890 Atomic orbital electron populations 1.69981 1.06058 1.26438 1.50958 1.25047 0.94836 0.99262 0.95458 0.86559 0.80059 0.83936 0.77568 1.19782 1.21042 1.21051 1.21308 0.92990 0.91168 1.50349 0.92710 1.19100 0.94060 0.91290 0.97329 1.21642 0.99069 0.93937 1.00054 1.21483 0.97027 0.92714 1.03043 1.21840 1.00151 0.91652 1.03961 1.21233 0.88275 0.85222 0.74690 1.90731 1.14137 1.86999 1.48179 1.48193 1.06864 1.05070 1.75483 1.21878 0.79183 1.02330 0.98759 1.21931 1.01466 0.94403 0.99424 1.21670 0.89658 0.99152 1.04681 1.21468 0.98131 0.91849 0.87157 1.21539 0.99108 0.84113 0.95838 1.45536 1.53252 1.19827 1.18788 1.15916 0.79650 0.80401 0.83693 1.91087 1.51709 1.79598 1.18722 1.44369 1.50494 1.19975 1.20168 1.20441 0.77676 0.88321 0.81230 1.90858 1.58620 1.46102 1.37143 0.93072 0.96590 0.96601 0.93454 0.93476 0.91762 0.91755 0.88910 0.89002 0.90527 0.88338 0.89089 0.90929 0.88782 0.90218 0.87688 0.88940 0.71209 0.72352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.15 5.15 -26.73 -0.14 -2.28 16 11 C -0.10 -1.75 4.50 -26.73 -0.12 -1.87 16 12 C -0.14 -1.57 4.05 -27.88 -0.11 -1.68 16 13 C 0.52 6.20 7.70 -10.98 -0.08 6.11 16 14 O -0.53 -8.69 15.40 5.56 0.09 -8.60 16 15 N -0.62 -4.96 2.97 -173.05 -0.51 -5.47 16 16 C 0.10 0.46 6.33 -3.71 -0.02 0.44 16 17 C -0.13 -0.43 5.98 -26.57 -0.16 -0.59 16 18 C -0.11 -0.45 4.95 -26.94 -0.13 -0.58 16 19 C 0.11 0.66 0.88 -133.08 -0.12 0.55 16 20 C 0.12 0.92 5.43 -3.97 -0.02 0.90 16 21 N -0.71 -5.22 5.54 -53.85 -0.30 -5.52 16 22 C 0.70 6.54 9.00 -87.80 -0.79 5.75 16 23 O -0.54 -7.13 18.04 5.33 0.10 -7.04 16 24 N -0.68 -4.72 5.72 -15.85 -0.09 -4.81 16 25 C 0.54 3.94 7.44 -10.71 -0.08 3.86 16 26 O -0.46 -4.31 18.02 5.60 0.10 -4.21 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 33 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.09 0.90 7.93 -51.93 -0.41 0.49 16 35 H 0.09 0.86 7.70 -51.93 -0.40 0.46 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.10 0.40 5.94 -51.93 -0.31 0.09 16 38 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 39 H 0.07 0.27 7.24 -51.93 -0.38 -0.11 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.10 1.08 7.02 -51.93 -0.36 0.71 16 43 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.44 3.14 8.27 -40.82 -0.34 2.81 16 45 H 0.43 2.18 8.96 -40.82 -0.37 1.82 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -36.70 369.38 -8.42 -45.11 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.75 Total: -2.48 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.33 Total: -2.61 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.17 Total: -42.40 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.28 Total: -19.84 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.70 -8.42 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323068166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.877 kcal (2) G-P(sol) polarization free energy of solvation -36.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds