Wall clock time and date at job start Tue Mar 31 2020 14:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00073 * 2 1 4 4 H 1.48497 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47245 * 300.00263 * 3 2 1 6 6 H 1.48503 * 109.46809 * 60.00259 * 3 2 1 7 7 C 1.37875 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00149 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46848 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46641 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47012 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99949 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99863 * 180.02562 * 13 12 11 16 16 C 1.46938 * 120.68434 * 359.97438 * 15 13 12 17 17 C 1.53181 * 108.83670 * 234.13259 * 16 15 13 18 18 C 1.53122 * 109.29764 * 304.83897 * 17 16 15 19 19 C 1.52471 * 109.66747 * 60.47833 * 18 17 16 20 20 C 1.47029 * 120.67584 * 180.02562 * 15 13 12 21 21 N 1.46802 * 110.41406 * 63.10744 * 19 18 17 22 22 C 1.34696 * 106.41177 * 118.92269 * 21 19 18 23 23 O 1.21543 * 123.78944 * 179.85167 * 22 21 19 24 24 N 1.33869 * 112.41977 * 359.58484 * 22 21 19 25 25 C 1.34921 * 111.60696 * 0.26874 * 24 22 21 26 26 O 1.21228 * 127.26066 * 180.02562 * 25 24 22 27 27 H 0.96996 * 120.00337 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46861 * 60.00759 * 9 7 2 29 29 H 1.08990 * 109.47586 * 300.00558 * 9 7 2 30 30 H 1.08991 * 109.46973 * 60.00307 * 10 9 7 31 31 H 1.09003 * 109.47071 * 300.00164 * 10 9 7 32 32 H 1.09001 * 109.47346 * 60.00179 * 11 10 9 33 33 H 1.09003 * 109.47031 * 299.99713 * 11 10 9 34 34 H 1.09002 * 109.47670 * 59.99665 * 12 11 10 35 35 H 1.09003 * 109.47053 * 299.99552 * 12 11 10 36 36 H 1.09004 * 109.57771 * 114.32223 * 16 15 13 37 37 H 1.09002 * 109.57626 * 353.94230 * 16 15 13 38 38 H 1.08999 * 109.50217 * 184.89694 * 17 16 15 39 39 H 1.08998 * 109.53130 * 64.80718 * 17 16 15 40 40 H 1.08992 * 109.44040 * 300.41547 * 18 17 16 41 41 H 1.09007 * 109.40484 * 180.51272 * 18 17 16 42 42 H 1.08995 * 109.57398 * 7.42220 * 20 15 13 43 43 H 1.09008 * 109.56969 * 247.05136 * 20 15 13 44 44 H 0.97001 * 126.78974 * 298.79810 * 21 19 18 45 45 H 0.97001 * 124.19565 * 180.27434 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0005 13 6 1.7209 -7.4552 -0.0018 14 8 0.5081 -7.4552 -0.0026 15 7 2.3948 -8.6223 -0.0010 16 6 3.8641 -8.6398 0.0006 17 6 4.3498 -9.4952 -1.1737 18 6 3.7151 -10.8858 -1.0834 19 6 2.1969 -10.7623 -1.1514 20 6 1.6748 -9.9043 -0.0028 21 7 1.7861 -10.2033 -2.4452 22 6 1.0151 -11.1368 -3.0356 23 8 0.5018 -10.9970 -4.1283 24 7 0.8826 -12.2380 -2.2860 25 6 1.5540 -12.1297 -1.1208 26 8 1.6267 -12.9554 -0.2361 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8895 30 1 2.8718 -3.6045 0.8894 31 1 2.8719 -3.6044 -0.8905 32 1 0.8538 -5.0446 -0.8914 33 1 0.8532 -5.0451 0.8886 34 1 3.1005 -6.0924 0.8899 35 1 3.1017 -6.0922 -0.8901 36 1 4.2233 -9.0671 0.9369 37 1 4.2416 -7.6230 -0.1075 38 1 5.4351 -9.5873 -1.1324 39 1 4.0602 -9.0233 -2.1126 40 1 3.9991 -11.3536 -0.1408 41 1 4.0666 -11.4989 -1.9132 42 1 0.6083 -9.7239 -0.1373 43 1 1.8434 -10.4191 0.9432 44 1 2.0216 -9.3330 -2.8031 45 1 0.3677 -13.0172 -2.5482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323068166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:40 Heat of formation + Delta-G solvation = -127.460139 kcal Electronic energy + Delta-G solvation = -27534.939537 eV Core-core repulsion = 23551.184857 eV Total energy + Delta-G solvation = -3983.754680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.80657 -41.11807 -39.87914 -38.66622 -37.01827 -36.61775 -34.96184 -34.55892 -33.23206 -31.99819 -30.94823 -27.87435 -26.41537 -25.84201 -24.08579 -23.91792 -22.96707 -21.86996 -21.54147 -20.05029 -19.16355 -18.43697 -18.12118 -17.86688 -17.67665 -17.16899 -17.01076 -16.80669 -16.55667 -16.34560 -15.87474 -15.46982 -15.32817 -15.31889 -14.59724 -14.50614 -14.42081 -13.93908 -13.64017 -13.57422 -13.50820 -13.28280 -12.83956 -12.54221 -12.27737 -12.19660 -12.15336 -12.12350 -12.05244 -11.92298 -11.59438 -11.44614 -11.35311 -11.28745 -11.09474 -10.76069 -10.71059 -10.54820 -9.71386 -8.17842 -6.29815 0.36201 1.26497 1.41509 1.42230 1.55616 1.60237 1.76971 1.85221 2.07629 2.42750 2.79893 3.15293 3.28454 3.37281 3.68599 3.96536 3.99155 4.05411 4.14707 4.16765 4.30531 4.49236 4.52913 4.64813 4.67566 4.71186 4.80062 4.86530 4.87838 4.95763 5.00021 5.08003 5.21166 5.31184 5.35216 5.39971 5.44632 5.59299 5.62839 5.75975 5.80471 5.90164 6.22737 6.26393 6.30252 6.89630 6.98051 7.14303 7.40099 8.94670 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.002226 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.371331 B =12577.862958 C =12950.180297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.009 4.009 3 Si 0.969 3.031 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.017 3.983 10 C -0.094 4.094 11 C -0.097 4.097 12 C -0.125 4.125 13 C 0.514 3.486 14 O -0.585 6.585 15 N -0.607 5.607 16 C 0.092 3.908 17 C -0.128 4.128 18 C -0.110 4.110 19 C 0.113 3.887 20 C 0.118 3.882 21 N -0.701 5.701 22 C 0.705 3.295 23 O -0.582 6.582 24 N -0.670 5.670 25 C 0.545 3.455 26 O -0.476 6.476 27 H 0.262 0.738 28 H -0.017 1.017 29 H -0.017 1.017 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.444 0.556 45 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.749 -28.238 -1.152 31.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.793 3.207 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.086 0.914 9 C -0.020 4.020 10 C -0.131 4.131 11 C -0.136 4.136 12 C -0.164 4.164 13 C 0.304 3.696 14 O -0.464 6.464 15 N -0.341 5.341 16 C -0.029 4.029 17 C -0.166 4.166 18 C -0.148 4.148 19 C 0.021 3.979 20 C -0.006 4.006 21 N -0.366 5.366 22 C 0.404 3.596 23 O -0.458 6.458 24 N -0.341 5.341 25 C 0.330 3.670 26 O -0.346 6.346 27 H 0.071 0.929 28 H 0.001 0.999 29 H 0.001 0.999 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.126 0.874 44 H 0.290 0.710 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 13.811 -28.449 -1.190 31.647 hybrid contribution -0.936 0.972 -0.411 1.410 sum 12.876 -27.477 -1.601 30.386 Atomic orbital electron populations 1.70141 1.08125 1.27645 1.52125 1.26103 0.95754 1.03793 0.94903 0.85343 0.79316 0.78459 0.77580 1.17860 1.20634 1.20608 1.21795 0.93799 0.92144 1.49841 0.91384 1.19075 0.94766 0.93987 0.94179 1.21432 0.97714 0.92530 1.01464 1.21263 0.97582 0.93883 1.00833 1.21714 0.98859 0.88982 1.06867 1.21295 0.87538 0.86463 0.74266 1.90721 1.16603 1.87836 1.51247 1.48156 1.08503 1.03869 1.73526 1.22274 0.76344 1.03772 1.00524 1.21940 1.02913 0.93208 0.98529 1.21750 0.87067 1.00186 1.05813 1.21533 0.99986 0.90597 0.85772 1.21525 0.97641 0.84310 0.97155 1.45559 1.52453 1.19585 1.18960 1.16014 0.79355 0.80968 0.83259 1.91057 1.53527 1.80522 1.20720 1.44266 1.50261 1.19731 1.19869 1.20522 0.77240 0.88496 0.80752 1.90858 1.59270 1.46859 1.37584 0.92925 0.99899 0.99883 0.91884 0.91865 0.94113 0.94146 0.86001 0.85858 0.88391 0.87087 0.86357 0.91305 0.87393 0.89417 0.90672 0.87381 0.70969 0.71425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.98 13.29 21.45 0.28 -58.70 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.02 0.92 4.97 29.85 0.15 1.07 16 10 C -0.09 -3.62 5.15 30.60 0.16 -3.47 16 11 C -0.10 -3.29 4.50 30.59 0.14 -3.15 16 12 C -0.12 -2.58 4.05 29.85 0.12 -2.46 16 13 C 0.51 11.86 7.70 87.66 0.67 12.54 16 14 O -0.58 -20.07 15.40 -3.03 -0.05 -20.12 16 15 N -0.61 -8.38 2.97 -819.78 -2.44 -10.82 16 16 C 0.09 0.44 6.33 86.36 0.55 0.99 16 17 C -0.13 -0.27 5.98 30.70 0.18 -0.09 16 18 C -0.11 -0.49 4.95 30.46 0.15 -0.34 16 19 C 0.11 1.22 0.88 2.62 0.00 1.23 16 20 C 0.12 1.70 5.43 86.14 0.47 2.16 16 21 N -0.70 -9.80 5.54 -442.59 -2.45 -12.25 16 22 C 0.70 13.09 9.00 179.36 1.61 14.71 16 23 O -0.58 -15.85 18.04 -3.85 -0.07 -15.92 16 24 N -0.67 -9.08 5.72 -441.17 -2.52 -11.60 16 25 C 0.54 7.34 7.44 87.77 0.65 8.00 16 26 O -0.48 -8.30 18.02 -2.87 -0.05 -8.36 16 27 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 28 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 29 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 33 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 34 H 0.12 1.87 7.93 -2.39 -0.02 1.85 16 35 H 0.12 1.81 7.70 -2.39 -0.02 1.80 16 36 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.11 0.33 5.94 -2.39 -0.01 0.31 16 38 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.07 0.25 7.24 -2.39 -0.02 0.23 16 40 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 42 H 0.07 1.59 7.02 -2.39 -0.02 1.57 16 43 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.44 5.94 8.27 -92.71 -0.77 5.18 16 45 H 0.44 4.38 8.96 -92.71 -0.83 3.55 16 Total: -1.00 -84.49 369.38 -0.28 -84.77 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -0.57 Total: 5.93 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 5.55 Total: 0.73 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -7.12 Total: -93.36 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.17 Total: -44.40 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -84.49 -0.28 -84.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323068166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.692 kcal (2) G-P(sol) polarization free energy of solvation -84.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds