Wall clock time and date at job start Tue Mar 31 2020 14:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00154 * 2 1 4 4 H 1.48494 * 109.47546 * 270.00285 * 3 2 1 5 5 H 1.48504 * 109.46923 * 30.00781 * 3 2 1 6 6 H 1.48504 * 109.47059 * 150.00359 * 3 2 1 7 7 C 1.37875 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00318 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47353 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47117 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46963 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46859 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00530 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99637 * 180.02562 * 13 12 11 16 16 C 1.46934 * 120.68470 * 0.02562 * 15 13 12 17 17 C 1.53180 * 108.90037 * 125.95770 * 16 15 13 18 18 C 1.53132 * 109.29214 * 55.06310 * 17 16 15 19 19 C 1.52475 * 109.60607 * 299.51683 * 18 17 16 20 20 C 1.47039 * 120.68286 * 180.02562 * 15 13 12 21 21 N 1.46819 * 110.55838 * 297.33051 * 19 18 17 22 22 C 1.34692 * 106.39887 * 241.31108 * 21 19 18 23 23 O 1.21539 * 123.78618 * 179.97438 * 22 21 19 24 24 N 1.33874 * 112.42291 * 359.72487 * 22 21 19 25 25 C 1.34928 * 111.60658 * 0.48141 * 24 22 21 26 26 O 1.21233 * 127.26685 * 179.81658 * 25 24 22 27 27 H 0.97004 * 120.00453 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47371 * 60.00395 * 9 7 2 29 29 H 1.08999 * 109.47306 * 300.00460 * 9 7 2 30 30 H 1.09003 * 109.46646 * 59.99844 * 10 9 7 31 31 H 1.08998 * 109.46759 * 300.00121 * 10 9 7 32 32 H 1.08997 * 109.47474 * 59.99852 * 11 10 9 33 33 H 1.08999 * 109.47229 * 300.00162 * 11 10 9 34 34 H 1.08998 * 109.47408 * 60.00064 * 12 11 10 35 35 H 1.08998 * 109.46603 * 299.99693 * 12 11 10 36 36 H 1.09007 * 109.56466 * 245.77937 * 16 15 13 37 37 H 1.08995 * 109.56757 * 6.01437 * 16 15 13 38 38 H 1.09002 * 109.50249 * 175.01294 * 17 16 15 39 39 H 1.08999 * 109.50181 * 295.12162 * 17 16 15 40 40 H 1.09005 * 109.44641 * 179.47551 * 18 17 16 41 41 H 1.09003 * 109.44954 * 59.55954 * 18 17 16 42 42 H 1.08993 * 109.58949 * 113.00593 * 20 15 13 43 43 H 1.09002 * 109.58411 * 352.58455 * 20 15 13 44 44 H 0.97000 * 126.80317 * 61.30933 * 21 19 18 45 45 H 0.97002 * 124.19758 * 180.28940 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0005 13 6 1.7207 -7.4551 -0.0005 14 8 0.5079 -7.4551 -0.0005 15 7 2.3946 -8.6223 0.0005 16 6 3.8638 -8.6399 0.0022 17 6 4.3484 -9.4965 1.1760 18 6 3.7127 -10.8866 1.0843 19 6 2.1947 -10.7604 1.1521 20 6 1.6746 -9.9044 0.0000 21 7 1.7816 -10.1921 2.4413 22 6 1.0133 -11.1233 3.0387 23 8 0.5015 -10.9777 4.1314 24 7 0.8725 -12.2251 2.2914 25 6 1.5483 -12.1260 1.1278 26 8 1.6179 -12.9554 0.2463 27 1 -0.4851 0.8400 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6245 -2.5571 0.8896 30 1 2.8718 -3.6044 0.8895 31 1 2.8718 -3.6044 -0.8905 32 1 0.8537 -5.0446 -0.8913 33 1 0.8531 -5.0451 0.8885 34 1 3.1003 -6.0925 0.8899 35 1 3.1015 -6.0922 -0.8901 36 1 4.2249 -9.0659 -0.9340 37 1 4.2409 -7.6230 0.1100 38 1 5.4337 -9.5893 1.1352 39 1 4.0582 -9.0249 2.1149 40 1 4.0632 -11.5013 1.9135 41 1 3.9963 -11.3539 0.1413 42 1 1.8467 -10.4197 -0.9449 43 1 0.6076 -9.7243 0.1312 44 1 2.0156 -9.3190 2.7932 45 1 0.3516 -12.9998 2.5550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323068168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:44 Heat of formation + Delta-G solvation = -98.915053 kcal Electronic energy + Delta-G solvation = -27537.796061 eV Core-core repulsion = 23555.279189 eV Total energy + Delta-G solvation = -3982.516872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.15477 -40.29663 -39.12827 -37.92795 -36.24498 -35.00262 -34.24453 -32.72665 -32.67862 -31.04341 -29.62909 -26.58708 -25.63653 -24.83224 -23.42871 -22.58770 -22.21469 -21.01527 -20.07904 -19.28727 -18.51613 -17.36843 -17.17874 -17.01158 -16.48652 -16.29170 -16.15486 -15.86566 -15.72516 -15.04718 -14.85219 -14.65854 -14.44590 -14.41307 -13.75240 -13.53161 -13.34055 -13.12567 -12.67865 -12.26875 -12.09770 -11.75259 -11.67069 -11.64040 -11.56995 -11.35105 -11.01301 -10.87015 -10.74938 -10.59091 -10.52889 -10.44124 -10.08714 -9.91816 -9.65082 -9.26155 -9.03899 -9.00945 -8.32220 -5.96815 -3.99566 1.02159 1.90067 2.45006 2.50035 2.54850 2.70591 3.32740 3.38982 3.40821 3.41770 3.82044 3.89302 4.28583 4.31631 4.44953 4.49652 4.72826 4.78999 4.88450 5.03922 5.08270 5.15789 5.21171 5.24801 5.27841 5.33535 5.38638 5.50818 5.56023 5.74947 5.99267 6.07090 6.24069 6.28853 6.43762 6.48912 6.78625 6.83813 6.94585 7.04747 7.17481 7.68249 7.71941 7.87447 8.00502 8.04384 8.45699 9.08174 9.64259 11.14512 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023912 B = 0.002228 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.684685 B =12565.924074 C =12938.612153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.105 4.105 12 C -0.136 4.136 13 C 0.516 3.484 14 O -0.526 6.526 15 N -0.620 5.620 16 C 0.101 3.899 17 C -0.134 4.134 18 C -0.113 4.113 19 C 0.106 3.894 20 C 0.119 3.881 21 N -0.709 5.709 22 C 0.704 3.296 23 O -0.538 6.538 24 N -0.679 5.679 25 C 0.539 3.461 26 O -0.459 6.459 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.442 0.558 45 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.755 -27.675 1.581 29.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.143 4.143 12 C -0.176 4.176 13 C 0.306 3.694 14 O -0.400 6.400 15 N -0.356 5.356 16 C -0.022 4.022 17 C -0.172 4.172 18 C -0.152 4.152 19 C 0.014 3.986 20 C -0.006 4.006 21 N -0.374 5.374 22 C 0.403 3.597 23 O -0.411 6.411 24 N -0.350 5.350 25 C 0.323 3.677 26 O -0.327 6.327 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.123 0.877 44 H 0.288 0.712 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 9.734 -27.836 1.646 29.534 hybrid contribution 0.349 0.854 0.301 0.970 sum 10.083 -26.982 1.947 28.870 Atomic orbital electron populations 1.69970 1.06063 1.26551 1.50852 1.25042 0.94835 0.99248 0.95446 0.86613 0.79818 0.83609 0.78053 1.20702 1.21250 1.19924 1.21270 0.92953 0.91184 1.50498 0.92764 1.19096 0.94051 0.91270 0.97322 1.21642 0.99073 0.93940 1.00051 1.21482 0.97026 0.92711 1.03045 1.21839 1.00153 0.91654 1.03961 1.21233 0.88276 0.85219 0.74692 1.90731 1.14134 1.86998 1.48173 1.48196 1.06861 1.05077 1.75485 1.21871 0.79192 1.02329 0.98768 1.21931 1.01464 0.94396 0.99420 1.21672 0.89657 0.99140 1.04685 1.21484 0.98107 0.91777 0.87264 1.21559 0.99131 0.84099 0.95785 1.45538 1.53426 1.19485 1.18950 1.15916 0.79656 0.80389 0.83704 1.91086 1.51794 1.79475 1.18762 1.44372 1.50059 1.20260 1.20318 1.20433 0.77726 0.88298 0.81199 1.90859 1.58816 1.45728 1.37325 0.93013 0.96606 0.96599 0.93467 0.93464 0.91747 0.91769 0.88996 0.88914 0.90554 0.88343 0.89081 0.90927 0.90223 0.88768 0.88950 0.87677 0.71204 0.72353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.28 55.43 0.74 -26.61 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 11 C -0.10 -1.75 4.50 -26.73 -0.12 -1.87 16 12 C -0.14 -1.57 4.05 -27.88 -0.11 -1.68 16 13 C 0.52 6.20 7.70 -10.98 -0.08 6.11 16 14 O -0.53 -8.68 15.41 5.56 0.09 -8.60 16 15 N -0.62 -4.95 2.97 -173.00 -0.51 -5.47 16 16 C 0.10 0.46 6.33 -3.71 -0.02 0.44 16 17 C -0.13 -0.43 5.98 -26.57 -0.16 -0.59 16 18 C -0.11 -0.45 4.96 -26.93 -0.13 -0.58 16 19 C 0.11 0.66 0.88 -133.04 -0.12 0.55 16 20 C 0.12 0.92 5.43 -3.92 -0.02 0.90 16 21 N -0.71 -5.24 5.52 -53.81 -0.30 -5.54 16 22 C 0.70 6.55 9.00 -87.80 -0.79 5.76 16 23 O -0.54 -7.14 18.04 5.33 0.10 -7.05 16 24 N -0.68 -4.73 5.72 -15.85 -0.09 -4.82 16 25 C 0.54 3.94 7.45 -10.72 -0.08 3.86 16 26 O -0.46 -4.31 18.02 5.60 0.10 -4.21 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 33 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.09 0.86 7.70 -51.93 -0.40 0.46 16 35 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.10 0.40 5.93 -51.93 -0.31 0.09 16 38 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 39 H 0.07 0.27 7.23 -51.93 -0.38 -0.10 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 1.08 7.02 -51.93 -0.36 0.71 16 44 H 0.44 3.16 8.27 -40.82 -0.34 2.83 16 45 H 0.43 2.19 8.96 -40.82 -0.37 1.82 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -36.67 369.37 -8.42 -45.09 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.75 Total: -2.42 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.33 Total: -2.60 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.16 Total: -42.43 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.28 Total: -19.85 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.67 -8.42 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323068168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.825 kcal (2) G-P(sol) polarization free energy of solvation -36.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds