Wall clock time and date at job start Tue Mar 31 2020 14:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00154 * 2 1 4 4 H 1.48494 * 109.47546 * 270.00285 * 3 2 1 5 5 H 1.48504 * 109.46923 * 30.00781 * 3 2 1 6 6 H 1.48504 * 109.47059 * 150.00359 * 3 2 1 7 7 C 1.37875 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00318 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47353 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47117 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46963 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46859 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00530 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99637 * 180.02562 * 13 12 11 16 16 C 1.46934 * 120.68470 * 0.02562 * 15 13 12 17 17 C 1.53180 * 108.90037 * 125.95770 * 16 15 13 18 18 C 1.53132 * 109.29214 * 55.06310 * 17 16 15 19 19 C 1.52475 * 109.60607 * 299.51683 * 18 17 16 20 20 C 1.47039 * 120.68286 * 180.02562 * 15 13 12 21 21 N 1.46819 * 110.55838 * 297.33051 * 19 18 17 22 22 C 1.34692 * 106.39887 * 241.31108 * 21 19 18 23 23 O 1.21539 * 123.78618 * 179.97438 * 22 21 19 24 24 N 1.33874 * 112.42291 * 359.72487 * 22 21 19 25 25 C 1.34928 * 111.60658 * 0.48141 * 24 22 21 26 26 O 1.21233 * 127.26685 * 179.81658 * 25 24 22 27 27 H 0.97004 * 120.00453 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47371 * 60.00395 * 9 7 2 29 29 H 1.08999 * 109.47306 * 300.00460 * 9 7 2 30 30 H 1.09003 * 109.46646 * 59.99844 * 10 9 7 31 31 H 1.08998 * 109.46759 * 300.00121 * 10 9 7 32 32 H 1.08997 * 109.47474 * 59.99852 * 11 10 9 33 33 H 1.08999 * 109.47229 * 300.00162 * 11 10 9 34 34 H 1.08998 * 109.47408 * 60.00064 * 12 11 10 35 35 H 1.08998 * 109.46603 * 299.99693 * 12 11 10 36 36 H 1.09007 * 109.56466 * 245.77937 * 16 15 13 37 37 H 1.08995 * 109.56757 * 6.01437 * 16 15 13 38 38 H 1.09002 * 109.50249 * 175.01294 * 17 16 15 39 39 H 1.08999 * 109.50181 * 295.12162 * 17 16 15 40 40 H 1.09005 * 109.44641 * 179.47551 * 18 17 16 41 41 H 1.09003 * 109.44954 * 59.55954 * 18 17 16 42 42 H 1.08993 * 109.58949 * 113.00593 * 20 15 13 43 43 H 1.09002 * 109.58411 * 352.58455 * 20 15 13 44 44 H 0.97000 * 126.80317 * 61.30933 * 21 19 18 45 45 H 0.97002 * 124.19758 * 180.28940 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0005 13 6 1.7207 -7.4551 -0.0005 14 8 0.5079 -7.4551 -0.0005 15 7 2.3946 -8.6223 0.0005 16 6 3.8638 -8.6399 0.0022 17 6 4.3484 -9.4965 1.1760 18 6 3.7127 -10.8866 1.0843 19 6 2.1947 -10.7604 1.1521 20 6 1.6746 -9.9044 0.0000 21 7 1.7816 -10.1921 2.4413 22 6 1.0133 -11.1233 3.0387 23 8 0.5015 -10.9777 4.1314 24 7 0.8725 -12.2251 2.2914 25 6 1.5483 -12.1260 1.1278 26 8 1.6179 -12.9554 0.2463 27 1 -0.4851 0.8400 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6245 -2.5571 0.8896 30 1 2.8718 -3.6044 0.8895 31 1 2.8718 -3.6044 -0.8905 32 1 0.8537 -5.0446 -0.8913 33 1 0.8531 -5.0451 0.8885 34 1 3.1003 -6.0925 0.8899 35 1 3.1015 -6.0922 -0.8901 36 1 4.2249 -9.0659 -0.9340 37 1 4.2409 -7.6230 0.1100 38 1 5.4337 -9.5893 1.1352 39 1 4.0582 -9.0249 2.1149 40 1 4.0632 -11.5013 1.9135 41 1 3.9963 -11.3539 0.1413 42 1 1.8467 -10.4197 -0.9449 43 1 0.6076 -9.7243 0.1312 44 1 2.0156 -9.3190 2.7932 45 1 0.3516 -12.9998 2.5550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323068168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:43 Heat of formation + Delta-G solvation = -127.357655 kcal Electronic energy + Delta-G solvation = -27539.029425 eV Core-core repulsion = 23555.279189 eV Total energy + Delta-G solvation = -3983.750236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.80511 -41.11731 -39.87818 -38.66625 -37.01671 -36.61767 -34.95890 -34.55853 -33.23337 -31.99566 -30.94659 -27.87402 -26.41245 -25.84296 -24.08585 -23.91755 -22.96393 -21.86929 -21.54270 -20.05082 -19.16442 -18.43374 -18.11992 -17.86699 -17.67453 -17.17165 -17.00669 -16.80441 -16.55853 -16.34850 -15.87230 -15.46949 -15.33144 -15.31982 -14.59530 -14.49861 -14.42084 -13.93987 -13.63914 -13.57283 -13.51312 -13.28126 -12.80959 -12.54321 -12.31160 -12.19716 -12.15377 -12.11604 -12.05295 -11.92329 -11.59411 -11.44611 -11.35095 -11.28911 -11.10600 -10.76003 -10.71136 -10.53986 -9.71350 -8.17670 -6.29761 0.36135 1.26288 1.41426 1.43556 1.54511 1.60233 1.77436 1.85229 2.07445 2.42854 2.80086 3.15374 3.28145 3.37397 3.68614 3.96363 3.99174 4.05340 4.14890 4.16746 4.30558 4.49239 4.52972 4.64812 4.67524 4.71150 4.80044 4.86515 4.87781 4.95760 4.99977 5.08038 5.21139 5.31153 5.35180 5.39914 5.44587 5.59115 5.62813 5.76015 5.80452 5.90082 6.22751 6.26397 6.30232 6.89476 6.98058 7.14284 7.40124 8.94631 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023912 B = 0.002228 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.684685 B =12565.924074 C =12938.612153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.008 4.008 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.017 3.983 10 C -0.094 4.094 11 C -0.097 4.097 12 C -0.125 4.125 13 C 0.514 3.486 14 O -0.585 6.585 15 N -0.607 5.607 16 C 0.092 3.908 17 C -0.128 4.128 18 C -0.110 4.110 19 C 0.113 3.887 20 C 0.119 3.881 21 N -0.701 5.701 22 C 0.705 3.295 23 O -0.582 6.582 24 N -0.670 5.670 25 C 0.545 3.455 26 O -0.476 6.476 27 H 0.262 0.738 28 H -0.017 1.017 29 H -0.018 1.018 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.444 0.556 45 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.734 -28.224 1.146 31.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.181 1.181 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.020 4.020 10 C -0.131 4.131 11 C -0.136 4.136 12 C -0.164 4.164 13 C 0.304 3.696 14 O -0.464 6.464 15 N -0.341 5.341 16 C -0.029 4.029 17 C -0.166 4.166 18 C -0.148 4.148 19 C 0.021 3.979 20 C -0.006 4.006 21 N -0.366 5.366 22 C 0.404 3.596 23 O -0.458 6.458 24 N -0.341 5.341 25 C 0.330 3.670 26 O -0.346 6.346 27 H 0.071 0.929 28 H 0.001 0.999 29 H 0.001 0.999 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.093 0.907 44 H 0.290 0.710 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 13.789 -28.430 1.189 31.620 hybrid contribution -0.919 0.967 0.402 1.394 sum 12.870 -27.463 1.591 30.371 Atomic orbital electron populations 1.70134 1.08134 1.27712 1.52038 1.26100 0.95750 1.03788 0.94878 0.85393 0.78723 0.78086 0.78511 1.19721 1.21162 1.18139 1.21768 0.93801 0.92160 1.49991 0.91381 1.19070 0.94759 0.93975 0.94167 1.21432 0.97717 0.92532 1.01462 1.21261 0.97582 0.93882 1.00834 1.21714 0.98858 0.88984 1.06866 1.21294 0.87538 0.86460 0.74268 1.90722 1.16598 1.87835 1.51240 1.48158 1.08499 1.03876 1.73530 1.22267 0.76354 1.03769 1.00534 1.21940 1.02912 0.93203 0.98521 1.21753 0.87061 1.00171 1.05826 1.21551 0.99963 0.90523 0.85871 1.21545 0.97661 0.84294 0.97108 1.45561 1.52639 1.19246 1.19115 1.16013 0.79364 0.80952 0.83268 1.91055 1.53613 1.80404 1.20758 1.44269 1.49835 1.20011 1.20023 1.20515 0.77293 0.88470 0.80718 1.90859 1.59461 1.46488 1.37766 0.92919 0.99897 0.99911 0.91864 0.91886 0.94138 0.94123 0.85856 0.86003 0.88411 0.87095 0.86347 0.91316 0.89423 0.87364 0.87373 0.90664 0.70974 0.71428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.01 13.28 21.45 0.28 -58.72 16 2 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.02 0.94 4.97 29.85 0.15 1.09 16 10 C -0.09 -3.63 5.15 30.59 0.16 -3.47 16 11 C -0.10 -3.29 4.50 30.59 0.14 -3.15 16 12 C -0.12 -2.58 4.05 29.85 0.12 -2.46 16 13 C 0.51 11.86 7.70 87.66 0.67 12.53 16 14 O -0.58 -20.06 15.41 -3.03 -0.05 -20.11 16 15 N -0.61 -8.37 2.97 -819.64 -2.43 -10.81 16 16 C 0.09 0.44 6.33 86.36 0.55 0.99 16 17 C -0.13 -0.27 5.98 30.70 0.18 -0.09 16 18 C -0.11 -0.49 4.96 30.46 0.15 -0.34 16 19 C 0.11 1.22 0.88 2.64 0.00 1.22 16 20 C 0.12 1.70 5.43 86.16 0.47 2.17 16 21 N -0.70 -9.83 5.52 -442.48 -2.44 -12.27 16 22 C 0.70 13.12 9.00 179.36 1.61 14.73 16 23 O -0.58 -15.88 18.04 -3.84 -0.07 -15.94 16 24 N -0.67 -9.11 5.72 -441.18 -2.52 -11.63 16 25 C 0.54 7.35 7.45 87.76 0.65 8.01 16 26 O -0.48 -8.31 18.02 -2.88 -0.05 -8.36 16 27 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 28 H -0.02 -1.04 8.14 -2.39 -0.02 -1.05 16 29 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 33 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 34 H 0.12 1.82 7.70 -2.39 -0.02 1.80 16 35 H 0.12 1.86 7.94 -2.39 -0.02 1.85 16 36 H 0.10 0.16 8.14 -2.38 -0.02 0.15 16 37 H 0.11 0.33 5.93 -2.39 -0.01 0.31 16 38 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.07 0.25 7.23 -2.39 -0.02 0.24 16 40 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 41 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.59 7.02 -2.39 -0.02 1.57 16 44 H 0.44 5.98 8.27 -92.71 -0.77 5.22 16 45 H 0.44 4.40 8.96 -92.71 -0.83 3.57 16 Total: -1.00 -84.48 369.37 -0.27 -84.74 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -0.57 Total: 6.08 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.55 Total: 0.71 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -7.11 Total: -93.43 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -0.17 Total: -44.42 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -84.48 -0.27 -84.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323068168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.615 kcal (2) G-P(sol) polarization free energy of solvation -84.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds