Wall clock time and date at job start Tue Mar 31 2020 14:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00093 * 2 1 4 4 H 1.48501 * 109.46958 * 240.00062 * 3 2 1 5 5 H 1.48501 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46965 * 120.00248 * 3 2 1 7 7 C 1.37879 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99663 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00297 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47103 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47103 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47206 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00088 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00120 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00139 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.54229 * 300.00300 * 16 15 13 18 18 N 1.34492 * 126.28978 * 60.00139 * 17 16 15 19 19 C 1.31126 * 105.61910 * 180.02562 * 18 17 16 20 20 O 1.33643 * 106.89467 * 359.97438 * 19 18 17 21 21 N 1.21303 * 109.81437 * 0.02562 * 20 19 18 22 22 C 1.53175 * 109.54254 * 60.17968 * 16 15 13 23 23 C 1.53107 * 109.15706 * 63.06249 * 22 16 15 24 24 O 1.42908 * 109.48585 * 57.47539 * 23 22 16 25 25 C 1.42904 * 114.09555 * 298.89135 * 24 23 22 26 26 C 1.53086 * 109.41939 * 61.15821 * 25 24 23 27 27 H 0.97007 * 119.99823 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46888 * 60.00251 * 9 7 2 29 29 H 1.08995 * 109.47002 * 300.00164 * 9 7 2 30 30 H 1.09000 * 109.47149 * 60.00219 * 10 9 7 31 31 H 1.08995 * 109.47117 * 299.99902 * 10 9 7 32 32 H 1.09000 * 109.46907 * 60.00110 * 11 10 9 33 33 H 1.08995 * 109.47087 * 299.99960 * 11 10 9 34 34 H 1.09000 * 109.47149 * 60.00259 * 12 11 10 35 35 H 1.09005 * 109.47255 * 299.99945 * 12 11 10 36 36 H 0.97001 * 120.00465 * 0.02562 * 15 13 12 37 37 H 1.07999 * 126.55648 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.52304 * 182.88116 * 22 16 15 39 39 H 1.08995 * 109.52570 * 303.07065 * 22 16 15 40 40 H 1.08997 * 109.40667 * 297.49362 * 23 22 16 41 41 H 1.08999 * 109.49134 * 177.50564 * 23 22 16 42 42 H 1.09001 * 109.47560 * 301.17088 * 25 24 23 43 43 H 1.09001 * 109.48704 * 181.14837 * 25 24 23 44 44 H 1.08999 * 109.52232 * 182.48816 * 26 25 24 45 45 H 1.08998 * 109.52176 * 62.29195 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4744 -6.1501 -0.0005 13 6 1.7209 -7.4551 -0.0005 14 8 0.5081 -7.4551 0.0004 15 7 2.3948 -8.6223 -0.0016 16 6 1.6622 -9.8911 -0.0010 17 6 0.7966 -9.9728 1.2299 18 7 -0.1882 -9.1217 1.5684 19 6 -0.6673 -9.5698 2.7038 20 8 0.0321 -10.6652 3.0151 21 7 0.8648 -10.8785 2.1592 22 6 0.7829 -9.9756 -1.2524 23 6 1.6767 -9.9732 -2.4955 24 8 2.5974 -11.0637 -2.4228 25 6 3.4773 -11.0103 -1.2980 26 6 2.6562 -11.0566 -0.0068 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8719 -3.6044 0.8895 31 1 2.8718 -3.6044 -0.8905 32 1 0.8533 -5.0451 -0.8897 33 1 0.8539 -5.0446 0.8903 34 1 3.1017 -6.0923 0.8890 35 1 3.1005 -6.0924 -0.8910 36 1 3.3648 -8.6224 -0.0020 37 1 -1.4736 -9.1369 3.2773 38 1 0.1997 -10.8961 -1.2263 39 1 0.1107 -9.1182 -1.2839 40 1 2.2282 -9.0343 -2.5433 41 1 1.0591 -10.0778 -3.3876 42 1 4.0524 -10.0850 -1.3302 43 1 4.1570 -11.8620 -1.3273 44 1 3.3224 -10.9715 0.8517 45 1 2.1120 -11.9996 0.0452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324061336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:50 Heat of formation + Delta-G solvation = -16.887175 kcal Electronic energy + Delta-G solvation = -27910.333591 eV Core-core repulsion = 23931.373714 eV Total energy + Delta-G solvation = -3978.959876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.78079 -40.89520 -38.78717 -36.48543 -35.06142 -34.76485 -32.82600 -32.52645 -31.63115 -31.46069 -29.54465 -26.53025 -25.50564 -24.67261 -23.66664 -22.81246 -22.52199 -20.69982 -19.95645 -19.82096 -18.32480 -18.21739 -17.17922 -16.51758 -16.37560 -16.19249 -15.95796 -15.76938 -15.52003 -15.12226 -14.49679 -14.40705 -13.81162 -13.66323 -13.51786 -12.92195 -12.78989 -12.67339 -12.55874 -12.14760 -11.94593 -11.72470 -11.67296 -11.57485 -11.37400 -11.02134 -10.96806 -10.86345 -10.52961 -10.50908 -10.40362 -10.35473 -10.02778 -9.61181 -9.58253 -9.34355 -9.19572 -8.98221 -8.30155 -5.95106 -3.97671 0.98167 2.05926 2.70828 2.86819 3.00822 3.34787 3.35107 3.39499 3.41749 3.53156 3.70783 4.28973 4.37791 4.46838 4.48892 4.73173 4.77094 4.86222 5.00627 5.11815 5.17495 5.27898 5.32330 5.36657 5.40238 5.41864 5.52074 5.55645 5.63166 5.83868 5.86076 5.88806 6.14321 6.21283 6.31300 6.55170 6.79723 6.84636 7.02552 7.19988 7.35918 7.73966 7.90431 7.99153 8.06322 8.29869 8.48164 9.09844 9.65883 11.16164 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.002579 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.994512 B =10854.893571 C =11863.963423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.110 4.110 11 C -0.100 4.100 12 C -0.137 4.137 13 C 0.501 3.499 14 O -0.483 6.483 15 N -0.734 5.734 16 C 0.275 3.725 17 C 0.160 3.840 18 N -0.428 5.428 19 C 0.145 3.855 20 O 0.072 5.928 21 N -0.381 5.381 22 C -0.161 4.161 23 C 0.066 3.934 24 O -0.380 6.380 25 C 0.063 3.937 26 C -0.153 4.153 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.401 0.599 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -26.797 1.527 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.148 4.148 11 C -0.138 4.138 12 C -0.177 4.177 13 C 0.287 3.713 14 O -0.354 6.354 15 N -0.391 5.391 16 C 0.186 3.814 17 C -0.114 4.114 18 N -0.159 5.159 19 C -0.097 4.097 20 O 0.012 5.988 21 N -0.087 5.087 22 C -0.200 4.200 23 C -0.011 4.011 24 O -0.299 6.299 25 C -0.014 4.014 26 C -0.192 4.192 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.237 0.763 37 H 0.276 0.724 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.120 0.880 44 H 0.104 0.896 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.023 -27.160 1.006 27.475 hybrid contribution 0.604 1.319 0.700 1.611 sum 4.627 -25.840 1.706 26.307 Atomic orbital electron populations 1.69966 1.06041 1.26610 1.50853 1.25037 0.94839 0.99198 0.95449 0.86677 0.79589 0.83276 0.78550 1.20273 1.21303 1.20303 1.21253 0.92937 0.91247 1.50532 0.92844 1.19076 0.94020 0.91221 0.97267 1.21650 0.99079 0.94104 0.99971 1.21420 0.96914 0.92534 1.02935 1.21788 1.00102 0.92078 1.03706 1.21174 0.89032 0.85153 0.75897 1.90796 1.13111 1.86811 1.44646 1.46290 1.09875 1.04467 1.78512 1.18217 0.89831 0.85360 0.87957 1.26078 0.97164 0.89501 0.98653 1.72390 1.08417 1.24720 1.10386 1.30826 0.98858 0.85857 0.94132 1.85284 1.34668 1.39629 1.39262 1.74610 1.10055 1.23289 1.00784 1.22607 0.99186 1.05311 0.92914 1.22582 0.91040 0.89836 0.97625 1.87958 1.49034 1.47325 1.45547 1.22572 0.91716 1.02574 0.84519 1.22432 0.98736 0.97952 1.00048 0.92990 0.96595 0.96656 0.93622 0.93527 0.91779 0.91838 0.89575 0.89314 0.76337 0.72367 0.90487 0.87217 0.92480 0.88174 0.92745 0.88022 0.89575 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 11 C -0.10 -1.76 4.50 -26.73 -0.12 -1.88 16 12 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 13 C 0.50 6.61 7.20 -10.99 -0.08 6.53 16 14 O -0.48 -7.99 11.26 5.55 0.06 -7.92 16 15 N -0.73 -7.32 4.22 -48.51 -0.20 -7.53 16 16 C 0.28 2.84 0.64 -132.78 -0.08 2.75 16 17 C 0.16 1.96 6.39 -156.37 -1.00 0.96 16 18 N -0.43 -5.63 8.74 -13.72 -0.12 -5.75 16 19 C 0.14 1.31 13.40 51.99 0.70 2.01 16 20 O 0.07 0.72 11.31 18.10 0.20 0.93 16 21 N -0.38 -4.42 11.47 30.88 0.35 -4.07 16 22 C -0.16 -1.72 4.75 -26.59 -0.13 -1.85 16 23 C 0.07 0.61 6.68 37.21 0.25 0.86 16 24 O -0.38 -3.60 10.77 -35.23 -0.38 -3.98 16 25 C 0.06 0.44 6.67 37.20 0.25 0.68 16 26 C -0.15 -1.21 4.47 -26.59 -0.12 -1.33 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.40 2.89 7.53 -40.82 -0.31 2.58 16 37 H 0.26 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.11 1.46 6.12 -51.93 -0.32 1.14 16 40 H 0.06 0.53 7.75 -51.93 -0.40 0.13 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.31 7.10 -51.93 -0.37 -0.05 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -36.08 365.39 -6.89 -42.98 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.85 Total: -1.26 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.18 Total: -9.00 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.77 Total: -44.12 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.11 Total: -10.98 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.08 -6.89 -42.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324061336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.091 kcal (2) G-P(sol) polarization free energy of solvation -36.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds