Wall clock time and date at job start Tue Mar 31 2020 14:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 7 7 N 1.40082 * 126.03878 * 90.02060 * 6 5 3 8 8 C 1.30837 * 108.20450 * 180.02562 * 7 6 5 9 9 C 1.50700 * 125.89592 * 179.97438 * 8 7 6 10 10 C 1.39866 * 108.20188 * 0.02562 * 8 7 6 11 11 C 1.50707 * 126.03869 * 179.97438 * 10 8 7 12 12 N 1.46506 * 109.47021 * 89.97509 * 11 10 8 13 13 C 1.34777 * 119.99941 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99745 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00017 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47296 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.47145 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00100 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99790 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99783 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99970 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47211 * 90.00013 * 21 19 17 23 23 H 1.48498 * 109.47330 * 210.00553 * 21 19 17 24 24 H 1.48507 * 109.47325 * 330.00186 * 21 19 17 25 25 C 1.34950 * 126.03552 * 269.71733 * 6 5 3 26 26 C 1.50705 * 126.12691 * 359.97438 * 25 6 5 27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 31 31 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 32 32 H 1.09002 * 109.47409 * 90.02860 * 9 8 7 33 33 H 1.09000 * 109.47024 * 210.02367 * 9 8 7 34 34 H 1.08999 * 109.47633 * 330.02559 * 9 8 7 35 35 H 1.08997 * 109.47366 * 209.97490 * 11 10 8 36 36 H 1.09004 * 109.47095 * 329.97856 * 11 10 8 37 37 H 0.96996 * 120.00068 * 0.02562 * 12 11 10 38 38 H 1.09001 * 109.47234 * 299.99659 * 15 13 12 39 39 H 1.08997 * 109.47493 * 59.99510 * 15 13 12 40 40 H 1.08997 * 109.47049 * 299.99739 * 16 15 13 41 41 H 1.09000 * 109.47625 * 59.99753 * 16 15 13 42 42 H 0.96996 * 119.99336 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.47027 * 90.02785 * 26 25 6 44 44 H 1.08998 * 109.47283 * 210.02981 * 26 25 6 45 45 H 1.09004 * 109.47129 * 330.03076 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 7 3.9816 2.6799 -0.0117 7 7 4.2202 3.4731 1.1180 8 6 4.5710 4.6666 0.7127 9 6 4.9187 5.8343 1.5997 10 6 4.5666 4.6719 -0.6859 11 6 4.9085 5.8441 -1.5693 12 7 6.3442 5.8335 -1.8607 13 6 6.8812 6.7948 -2.6379 14 8 6.1759 7.6689 -3.0956 15 6 8.3579 6.7836 -2.9381 16 6 8.7053 7.9744 -3.8337 17 6 10.1822 7.9636 -4.1335 18 1 10.8103 7.1854 -3.7256 19 6 10.7315 8.9471 -4.9284 20 7 9.9667 9.8950 -5.4247 21 14 12.5622 8.9341 -5.2994 22 1 12.8118 8.1450 -6.5324 23 1 13.0369 10.3270 -5.4984 24 1 13.2934 8.3198 -4.1621 25 6 4.2075 3.4367 -1.1059 26 6 4.0782 2.9880 -2.5387 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9595 0.7833 0.8836 31 1 3.9525 0.7785 -0.8964 32 1 5.9882 5.8252 1.8098 33 1 4.6553 6.7643 1.0959 34 1 4.3640 5.7580 2.5349 35 1 4.3481 5.7724 -2.5014 36 1 4.6482 6.7716 -1.0592 37 1 6.9084 5.1347 -1.4943 38 1 8.9187 6.8547 -2.0062 39 1 8.6179 5.8564 -3.4487 40 1 8.1445 7.9039 -4.7657 41 1 8.4455 8.9015 -3.3227 42 1 10.3533 10.5870 -5.9836 43 1 3.0616 3.1713 -2.8865 44 1 4.7803 3.5453 -3.1588 45 1 4.2991 1.9228 -2.6073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326011959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:10 Heat of formation + Delta-G solvation = -57.079374 kcal Electronic energy + Delta-G solvation = -26645.608279 eV Core-core repulsion = 22664.905538 eV Total energy + Delta-G solvation = -3980.702741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.89726 -40.79437 -38.93535 -37.11889 -35.11951 -34.22390 -33.38860 -32.32843 -31.00328 -30.46990 -28.57269 -28.17832 -26.49226 -25.81006 -24.42290 -21.92350 -21.45983 -20.07540 -19.74735 -19.45324 -18.44661 -17.53712 -17.11113 -16.83866 -16.47504 -15.65036 -15.55203 -15.05249 -15.00797 -14.49958 -14.36789 -14.19334 -14.01583 -13.66562 -13.51350 -13.23692 -12.93905 -12.86297 -12.72396 -12.68615 -12.48689 -12.23278 -12.14288 -12.05988 -11.72410 -11.38849 -11.16521 -11.10757 -10.90162 -10.70425 -10.56645 -9.90039 -9.61237 -9.37767 -9.23326 -9.04693 -8.65126 -8.52065 -8.28122 -5.92536 -3.96611 1.26508 1.55152 1.80187 2.40291 2.41650 3.35310 3.36471 3.41519 3.44194 3.88170 3.95782 4.10170 4.26867 4.40682 4.50920 4.56937 4.57421 4.65565 4.72098 4.98887 5.04981 5.07377 5.18331 5.34670 5.42298 5.49779 5.52503 5.63643 5.72183 5.76030 5.86595 5.97772 6.05019 6.29972 6.32031 6.43628 6.59123 6.84237 6.96619 7.11016 7.44086 7.78858 7.92058 8.02712 8.12076 8.43428 8.88821 9.12567 9.66613 11.18394 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026092 B = 0.002053 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.850938 B =13633.723193 C =13926.534036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.440 3.560 4 O -0.483 6.483 5 C 0.148 3.852 6 N -0.370 5.370 7 N -0.290 5.290 8 C 0.104 3.896 9 C -0.076 4.076 10 C -0.246 4.246 11 C 0.200 3.800 12 N -0.739 5.739 13 C 0.509 3.491 14 O -0.537 6.537 15 C -0.130 4.130 16 C 0.037 3.963 17 C -0.526 4.526 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.117 3.883 26 C -0.100 4.100 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.396 0.604 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.260 0.740 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.967 -23.382 13.086 31.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.280 3.720 4 O -0.368 6.368 5 C 0.024 3.976 6 N -0.152 5.152 7 N -0.110 5.110 8 C -0.064 4.064 9 C -0.135 4.135 10 C -0.257 4.257 11 C 0.076 3.924 12 N -0.393 5.393 13 C 0.297 3.703 14 O -0.412 6.412 15 C -0.170 4.170 16 C -0.001 4.001 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.010 4.010 26 C -0.158 4.158 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.229 0.771 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.002 -23.152 13.639 32.343 hybrid contribution 1.002 0.051 -0.667 1.205 sum -17.000 -23.100 12.972 31.478 Atomic orbital electron populations 1.23332 0.75456 1.04035 1.02876 1.86471 1.24088 1.32659 1.84208 1.24048 0.92273 0.82083 0.73620 1.90770 1.66541 1.36235 1.43288 1.20873 0.88120 0.80225 1.08416 1.47747 1.54172 1.09129 1.04159 1.77370 1.23902 1.03053 1.06725 1.22302 0.96849 0.93805 0.93473 1.20255 1.02445 0.92999 0.97807 1.19760 1.16702 0.95609 0.93634 1.19325 0.82296 0.94129 0.96654 1.46352 1.08641 1.30747 1.53609 1.21532 0.91792 0.80202 0.76769 1.90670 1.63234 1.36337 1.50987 1.21851 0.88977 1.03749 1.02401 1.18894 0.95674 0.91266 0.94238 1.21239 0.93561 1.10868 1.30779 0.92645 1.25029 0.97854 0.95558 0.96001 1.70002 1.35149 1.13907 1.33776 0.86598 0.85597 0.77182 0.78596 1.20732 1.21253 1.19921 1.20913 0.98324 0.91297 0.90433 1.20590 1.04328 1.01964 0.88966 0.91636 0.87642 0.91693 0.84333 0.84601 0.90005 0.89944 0.90857 0.91411 0.91029 0.77065 0.90343 0.90419 0.95855 0.95807 0.92995 0.89802 0.88614 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.43 10.57 -39.26 -0.41 -2.84 16 3 C 0.44 3.76 8.03 36.00 0.29 4.05 16 4 O -0.48 -6.11 16.18 -18.76 -0.30 -6.41 16 5 C 0.15 0.94 6.84 -5.20 -0.04 0.91 16 6 N -0.37 -3.83 3.10 -58.31 -0.18 -4.02 16 7 N -0.29 -3.66 12.58 33.67 0.42 -3.23 16 8 C 0.10 1.26 7.22 -82.41 -0.59 0.66 16 9 C -0.08 -0.75 10.26 36.01 0.37 -0.38 16 10 C -0.25 -2.95 5.47 -105.05 -0.57 -3.52 16 11 C 0.20 2.67 5.57 -5.19 -0.03 2.64 16 12 N -0.74 -10.49 5.55 -61.47 -0.34 -10.84 16 13 C 0.51 9.75 7.83 -10.99 -0.09 9.67 16 14 O -0.54 -12.68 15.98 5.56 0.09 -12.59 16 15 C -0.13 -2.63 5.64 -27.89 -0.16 -2.79 16 16 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 17 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 21 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.12 1.23 6.93 -82.26 -0.57 0.66 16 26 C -0.10 -0.77 9.72 36.01 0.35 -0.42 16 27 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 30 H 0.14 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.14 0.39 7.04 -51.93 -0.37 0.03 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.80 7.25 -51.93 -0.38 0.42 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.94 7.80 -51.93 -0.40 0.53 16 36 H 0.07 1.01 7.26 -51.93 -0.38 0.63 16 37 H 0.40 4.71 8.46 -40.82 -0.35 4.36 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.79 7.80 -51.93 -0.40 0.38 16 45 H 0.07 0.36 7.08 -51.93 -0.37 -0.01 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -38.94 389.18 -6.48 -45.42 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.83 Total: -1.11 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.50 Total: -0.15 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.64 Total: -44.90 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.63 Total: -21.85 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.94 -6.48 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326011959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.663 kcal (2) G-P(sol) polarization free energy of solvation -38.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds