Wall clock time and date at job start Tue Mar 31 2020 14:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 7 7 N 1.40082 * 126.03878 * 90.02060 * 6 5 3 8 8 C 1.30837 * 108.20450 * 180.02562 * 7 6 5 9 9 C 1.50700 * 125.89592 * 179.97438 * 8 7 6 10 10 C 1.39866 * 108.20188 * 0.02562 * 8 7 6 11 11 C 1.50707 * 126.03869 * 179.97438 * 10 8 7 12 12 N 1.46506 * 109.47021 * 89.97509 * 11 10 8 13 13 C 1.34777 * 119.99941 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99745 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00017 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47296 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.47145 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00100 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99790 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99783 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99970 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47211 * 90.00013 * 21 19 17 23 23 H 1.48498 * 109.47330 * 210.00553 * 21 19 17 24 24 H 1.48507 * 109.47325 * 330.00186 * 21 19 17 25 25 C 1.34950 * 126.03552 * 269.71733 * 6 5 3 26 26 C 1.50705 * 126.12691 * 359.97438 * 25 6 5 27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 31 31 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 32 32 H 1.09002 * 109.47409 * 90.02860 * 9 8 7 33 33 H 1.09000 * 109.47024 * 210.02367 * 9 8 7 34 34 H 1.08999 * 109.47633 * 330.02559 * 9 8 7 35 35 H 1.08997 * 109.47366 * 209.97490 * 11 10 8 36 36 H 1.09004 * 109.47095 * 329.97856 * 11 10 8 37 37 H 0.96996 * 120.00068 * 0.02562 * 12 11 10 38 38 H 1.09001 * 109.47234 * 299.99659 * 15 13 12 39 39 H 1.08997 * 109.47493 * 59.99510 * 15 13 12 40 40 H 1.08997 * 109.47049 * 299.99739 * 16 15 13 41 41 H 1.09000 * 109.47625 * 59.99753 * 16 15 13 42 42 H 0.96996 * 119.99336 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.47027 * 90.02785 * 26 25 6 44 44 H 1.08998 * 109.47283 * 210.02981 * 26 25 6 45 45 H 1.09004 * 109.47129 * 330.03076 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 7 3.9816 2.6799 -0.0117 7 7 4.2202 3.4731 1.1180 8 6 4.5710 4.6666 0.7127 9 6 4.9187 5.8343 1.5997 10 6 4.5666 4.6719 -0.6859 11 6 4.9085 5.8441 -1.5693 12 7 6.3442 5.8335 -1.8607 13 6 6.8812 6.7948 -2.6379 14 8 6.1759 7.6689 -3.0956 15 6 8.3579 6.7836 -2.9381 16 6 8.7053 7.9744 -3.8337 17 6 10.1822 7.9636 -4.1335 18 1 10.8103 7.1854 -3.7256 19 6 10.7315 8.9471 -4.9284 20 7 9.9667 9.8950 -5.4247 21 14 12.5622 8.9341 -5.2994 22 1 12.8118 8.1450 -6.5324 23 1 13.0369 10.3270 -5.4984 24 1 13.2934 8.3198 -4.1621 25 6 4.2075 3.4367 -1.1059 26 6 4.0782 2.9880 -2.5387 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9595 0.7833 0.8836 31 1 3.9525 0.7785 -0.8964 32 1 5.9882 5.8252 1.8098 33 1 4.6553 6.7643 1.0959 34 1 4.3640 5.7580 2.5349 35 1 4.3481 5.7724 -2.5014 36 1 4.6482 6.7716 -1.0592 37 1 6.9084 5.1347 -1.4943 38 1 8.9187 6.8547 -2.0062 39 1 8.6179 5.8564 -3.4487 40 1 8.1445 7.9039 -4.7657 41 1 8.4455 8.9015 -3.3227 42 1 10.3533 10.5870 -5.9836 43 1 3.0616 3.1713 -2.8865 44 1 4.7803 3.5453 -3.1588 45 1 4.2991 1.9228 -2.6073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326011959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:09 Heat of formation + Delta-G solvation = -84.843317 kcal Electronic energy + Delta-G solvation = -26646.812214 eV Core-core repulsion = 22664.905538 eV Total energy + Delta-G solvation = -3981.906676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.69341 -41.46476 -40.47571 -37.76340 -36.25522 -35.49535 -35.12368 -33.35130 -32.77340 -31.28149 -29.49902 -28.82098 -27.69438 -27.01396 -25.64334 -23.39804 -22.51458 -21.22299 -20.78035 -20.47742 -19.05685 -18.78573 -18.20581 -17.71197 -17.43727 -17.22192 -16.70998 -16.48444 -16.36667 -15.86855 -15.24834 -15.10492 -14.66627 -14.61149 -14.50108 -14.20564 -14.14569 -14.11035 -13.90068 -13.47043 -13.29690 -13.22824 -13.17855 -13.04440 -12.95337 -12.78672 -12.75045 -12.44347 -11.93439 -11.87469 -11.85844 -11.60472 -11.56367 -11.26058 -10.77956 -10.53261 -10.17555 -9.97673 -9.50034 -8.14366 -6.28035 0.52012 0.93128 1.13499 1.44184 1.47139 1.47759 1.58062 1.81456 1.83105 2.43154 2.63029 3.18519 3.34404 3.53501 3.60238 3.90973 3.97504 4.04153 4.15277 4.17505 4.23211 4.25675 4.28524 4.53437 4.58259 4.60305 4.63184 4.65851 4.71906 4.82834 4.95469 4.98823 5.04042 5.13457 5.16560 5.17592 5.51079 5.56928 5.60345 5.69592 5.86143 5.90592 6.22296 6.50306 6.60103 6.71973 6.90927 7.41409 7.44527 8.98198 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026092 B = 0.002053 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.850938 B =13633.723193 C =13926.534036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.352 6.352 3 C 0.445 3.555 4 O -0.533 6.533 5 C 0.140 3.860 6 N -0.368 5.368 7 N -0.316 5.316 8 C 0.093 3.907 9 C -0.076 4.076 10 C -0.268 4.268 11 C 0.208 3.792 12 N -0.710 5.710 13 C 0.513 3.487 14 O -0.590 6.590 15 C -0.119 4.119 16 C 0.042 3.958 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.974 3.026 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.256 1.256 25 C 0.125 3.875 26 C -0.100 4.100 27 H 0.061 0.939 28 H 0.138 0.862 29 H 0.056 0.944 30 H 0.162 0.838 31 H 0.179 0.821 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.412 0.588 38 H 0.102 0.898 39 H 0.104 0.896 40 H -0.017 1.017 41 H -0.018 1.018 42 H 0.262 0.738 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.576 -26.747 13.677 33.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.268 6.268 3 C 0.287 3.713 4 O -0.421 6.421 5 C 0.018 3.982 6 N -0.150 5.150 7 N -0.137 5.137 8 C -0.074 4.074 9 C -0.135 4.135 10 C -0.279 4.279 11 C 0.084 3.916 12 N -0.363 5.363 13 C 0.301 3.699 14 O -0.470 6.470 15 C -0.158 4.158 16 C 0.004 3.996 17 C -0.579 4.579 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.797 3.203 22 H -0.197 1.197 23 H -0.213 1.213 24 H -0.180 1.180 25 C -0.003 4.003 26 C -0.158 4.158 27 H 0.080 0.920 28 H 0.156 0.844 29 H 0.075 0.925 30 H 0.180 0.820 31 H 0.196 0.804 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.248 0.752 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.001 0.999 41 H 0.000 1.000 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.609 -26.619 14.286 34.476 hybrid contribution 0.434 0.980 -0.818 1.348 sum -16.175 -25.640 13.468 33.173 Atomic orbital electron populations 1.23571 0.74453 1.05982 1.02318 1.86477 1.25081 1.31647 1.83569 1.24458 0.93043 0.81746 0.72059 1.90763 1.67718 1.37797 1.45850 1.21414 0.86717 0.78502 1.11575 1.48005 1.53281 1.10269 1.03436 1.77305 1.24737 1.03499 1.08134 1.22582 0.96773 0.94258 0.93809 1.20296 1.03105 0.92288 0.97762 1.19621 1.19009 0.95835 0.93466 1.19222 0.81108 0.94642 0.96639 1.46047 1.09439 1.29396 1.51454 1.21281 0.91188 0.80395 0.77002 1.90659 1.64140 1.38745 1.53504 1.21622 0.90220 1.01708 1.02283 1.18691 0.95093 0.92465 0.93355 1.21733 0.94325 1.11289 1.30595 0.90612 1.26138 1.03652 0.95015 0.95745 1.70184 1.37853 1.14953 1.34779 0.85325 0.78603 0.77240 0.79083 1.19703 1.21306 1.17958 1.21300 0.96452 0.90872 0.91679 1.20700 1.04248 1.04037 0.86837 0.92028 0.84427 0.92519 0.82043 0.80433 0.89080 0.90252 0.90291 0.91934 0.92086 0.75160 0.87984 0.87753 0.99859 0.99973 0.92934 0.89721 0.89125 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.35 -4.02 10.57 -51.41 -0.54 -4.56 16 3 C 0.44 6.80 8.03 71.23 0.57 7.37 16 4 O -0.53 -13.20 16.18 21.94 0.36 -12.85 16 5 C 0.14 1.36 6.84 85.63 0.59 1.94 16 6 N -0.37 -6.88 3.10 -338.40 -1.05 -7.93 16 7 N -0.32 -7.61 12.58 -47.39 -0.60 -8.20 16 8 C 0.09 2.20 7.22 43.10 0.31 2.51 16 9 C -0.08 -1.48 10.26 71.24 0.73 -0.75 16 10 C -0.27 -6.21 5.47 -20.14 -0.11 -6.32 16 11 C 0.21 5.53 5.57 85.63 0.48 6.01 16 12 N -0.71 -19.50 5.55 -466.77 -2.59 -22.09 16 13 C 0.51 19.75 7.83 87.65 0.69 20.44 16 14 O -0.59 -29.07 15.98 -3.04 -0.05 -29.12 16 15 C -0.12 -4.73 5.64 29.84 0.17 -4.56 16 16 C 0.04 2.32 4.26 29.85 0.13 2.45 16 17 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 18 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 19 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 20 N -0.94 -59.75 13.29 21.45 0.28 -59.46 16 21 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 25 C 0.12 2.41 6.93 41.41 0.29 2.69 16 26 C -0.10 -1.30 9.72 71.24 0.69 -0.60 16 27 H 0.06 0.57 8.13 -2.38 -0.02 0.55 16 28 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 30 H 0.16 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.18 0.19 7.04 -2.39 -0.02 0.18 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.56 7.25 -2.39 -0.02 1.54 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.75 7.80 -2.39 -0.02 1.73 16 36 H 0.06 1.77 7.26 -2.38 -0.02 1.75 16 37 H 0.41 8.89 8.46 -92.71 -0.78 8.10 16 38 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 39 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 40 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 41 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 42 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 1.31 7.80 -2.39 -0.02 1.29 16 45 H 0.10 0.63 7.08 -2.39 -0.02 0.61 16 Total: -1.00 -88.83 389.18 4.48 -84.35 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.22 Total: 11.48 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 6.42 Total: 2.00 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -3.95 Total: -97.69 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -0.24 Total: -46.53 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -88.83 4.48 -84.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326011959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.492 kcal (2) G-P(sol) polarization free energy of solvation -88.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds