Wall clock time and date at job start Tue Mar 31 2020 13:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.47491 * 2 1 4 4 C 1.34221 * 117.00032 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00367 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99908 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47178 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47281 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.47054 * 304.99981 * 8 7 6 10 10 O 1.42899 * 109.47270 * 64.99506 * 8 7 6 11 11 C 1.52995 * 109.47418 * 184.99948 * 8 7 6 12 12 N 1.46506 * 109.47358 * 179.97438 * 11 8 7 13 13 C 1.39779 * 119.99819 * 179.97438 * 12 11 8 14 14 C 1.38949 * 120.00373 * 180.02562 * 13 12 11 15 15 C 1.38007 * 119.99518 * 179.97438 * 14 13 12 16 16 C 1.38902 * 120.00593 * 0.02562 * 15 14 13 17 17 O 1.35796 * 119.99558 * 179.97438 * 16 15 14 18 18 C 1.34814 * 116.99905 * 5.54231 * 17 16 15 19 19 H 1.08001 * 119.99962 * 354.94516 * 18 17 16 20 20 C 1.38627 * 119.99781 * 174.94495 * 18 17 16 21 21 N 1.31573 * 120.00047 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99754 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47287 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47447 * 119.99694 * 22 20 18 25 25 H 1.48505 * 109.46879 * 239.99755 * 22 20 18 26 26 C 1.38899 * 120.00959 * 0.23780 * 16 15 14 27 27 C 1.38012 * 120.00613 * 359.48059 * 26 16 15 28 28 H 1.09004 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47108 * 300.00466 * 1 2 3 30 30 H 1.09005 * 109.47141 * 60.00162 * 1 2 3 31 31 H 1.08999 * 109.47108 * 239.99534 * 2 1 3 32 32 H 1.09005 * 109.46690 * 120.00124 * 2 1 3 33 33 H 1.09001 * 109.46934 * 60.00314 * 6 4 3 34 34 H 1.08996 * 109.47339 * 299.99943 * 6 4 3 35 35 H 1.08994 * 109.47310 * 59.99860 * 7 6 4 36 36 H 1.09005 * 109.47071 * 299.99548 * 7 6 4 37 37 H 0.96701 * 114.00045 * 60.00417 * 10 8 7 38 38 H 1.08997 * 109.47316 * 59.99551 * 11 8 7 39 39 H 1.09000 * 109.47035 * 300.00045 * 11 8 7 40 40 H 0.96996 * 119.99685 * 0.02562 * 12 11 8 41 41 H 1.07999 * 120.00601 * 359.95851 * 14 13 12 42 42 H 1.08001 * 119.99981 * 180.02562 * 15 14 13 43 43 H 0.97001 * 120.00236 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.99383 * 179.74343 * 26 16 15 45 45 H 1.08001 * 120.00015 * 180.22690 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9372 0.0000 7 6 5.4487 2.8571 0.0001 8 6 6.0336 4.2709 0.0002 9 1 5.6279 4.8320 -0.8416 10 8 5.6894 4.9287 1.2212 11 6 7.5564 4.1929 -0.1254 12 7 8.1164 5.5467 -0.1259 13 6 9.4979 5.7315 -0.2308 14 6 10.0292 7.0154 -0.2308 15 6 11.3933 7.1976 -0.3339 16 6 12.2351 6.0977 -0.4382 17 8 13.5773 6.2773 -0.5401 18 6 14.0370 7.5388 -0.4187 19 1 13.3419 8.3606 -0.3301 20 6 15.4019 7.7810 -0.4074 21 7 16.2487 6.7797 -0.5148 22 14 16.0388 9.5289 -0.2384 23 1 14.8915 10.4659 -0.1342 24 1 16.8771 9.6344 0.9828 25 1 16.8542 9.8760 -1.4300 26 6 11.7039 4.8143 -0.4438 27 6 10.3403 4.6314 -0.3348 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.5845 3.4699 0.8895 34 1 3.5854 3.4689 -0.8904 35 1 5.7847 2.3246 -0.8895 36 1 5.7846 2.3254 0.8904 37 1 6.0186 4.4838 2.0141 38 1 7.8190 3.6911 -1.0567 39 1 7.9621 3.6318 0.7165 40 1 7.5285 6.3147 -0.0527 41 1 9.3747 7.8707 -0.1504 42 1 11.8064 8.1955 -0.3335 43 1 17.2037 6.9492 -0.5066 44 1 12.3583 3.9594 -0.5290 45 1 9.9276 3.6333 -0.3355 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329140989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:11 Heat of formation + Delta-G solvation = -171.783469 kcal Electronic energy + Delta-G solvation = -25578.156659 eV Core-core repulsion = 21560.187224 eV Total energy + Delta-G solvation = -4017.969435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55477 -40.72250 -39.41804 -38.31241 -37.69199 -35.33755 -34.10200 -34.00196 -32.58008 -31.83356 -30.47954 -28.37870 -27.15776 -25.58279 -24.10176 -23.50685 -22.46533 -22.25565 -21.58305 -19.68077 -18.87897 -18.75995 -17.98155 -17.88120 -17.32637 -17.10519 -16.92995 -16.38646 -16.11026 -15.57857 -15.39549 -15.28096 -15.16385 -14.71485 -14.52963 -14.29262 -14.07331 -13.93536 -13.81770 -13.66623 -13.43069 -13.17354 -12.95606 -12.89020 -12.84396 -12.55842 -12.50713 -12.25212 -12.07055 -12.04853 -11.75067 -11.57806 -11.53840 -11.08330 -10.99516 -10.90981 -10.16885 -9.76446 -8.38658 -7.91196 -6.02217 0.59667 0.94367 1.16255 1.37386 1.46248 1.55594 1.67452 2.23259 2.63137 2.92468 3.26467 3.52950 3.62950 3.66533 3.71103 3.97696 4.03281 4.06418 4.13554 4.19573 4.21296 4.28634 4.33792 4.35876 4.58088 4.65486 4.71248 4.75462 4.79324 4.86899 4.90847 4.98327 5.11132 5.14439 5.16118 5.23984 5.29314 5.48070 5.48485 5.56114 5.79890 5.99575 6.12459 6.62185 6.70804 6.81599 7.06403 7.09569 7.94399 8.86136 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.048134 B = 0.001589 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.574592 B =17621.729758 C =18084.321062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.460 3.540 5 O -0.544 6.544 6 C -0.103 4.103 7 C -0.133 4.133 8 C 0.115 3.885 9 H 0.116 0.884 10 O -0.566 6.566 11 C 0.094 3.906 12 N -0.740 5.740 13 C 0.153 3.847 14 C -0.145 4.145 15 C -0.193 4.193 16 C 0.060 3.940 17 O -0.244 6.244 18 C -0.405 4.405 19 H 0.098 0.902 20 C -0.028 4.028 21 N -0.927 5.927 22 Si 1.017 2.983 23 H -0.252 1.252 24 H -0.270 1.270 25 H -0.270 1.270 26 C -0.156 4.156 27 C -0.147 4.147 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.388 0.612 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.405 0.595 41 H 0.139 0.861 42 H 0.118 0.882 43 H 0.269 0.731 44 H 0.112 0.888 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.284 -8.337 1.972 34.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.305 3.695 5 O -0.435 6.435 6 C -0.140 4.140 7 C -0.171 4.171 8 C 0.056 3.944 9 H 0.134 0.866 10 O -0.374 6.374 11 C -0.031 4.031 12 N -0.375 5.375 13 C 0.052 3.948 14 C -0.168 4.168 15 C -0.212 4.212 16 C 0.011 3.989 17 O -0.152 6.152 18 C -0.482 4.482 19 H 0.116 0.884 20 C -0.224 4.224 21 N -0.567 5.567 22 Si 0.837 3.163 23 H -0.175 1.175 24 H -0.195 1.195 25 H -0.195 1.195 26 C -0.176 4.176 27 C -0.169 4.169 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.238 0.762 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.241 0.759 41 H 0.156 0.844 42 H 0.136 0.864 43 H 0.078 0.922 44 H 0.130 0.870 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -33.060 -8.638 1.519 34.203 hybrid contribution 1.091 0.051 0.360 1.150 sum -31.968 -8.587 1.879 33.155 Atomic orbital electron populations 1.21826 0.90590 1.04278 1.03752 1.23246 0.97018 0.79440 1.02385 1.86519 1.24522 1.33472 1.83659 1.24420 0.80435 0.93666 0.71000 1.90680 1.61068 1.44688 1.47031 1.21390 0.95424 0.89122 1.08031 1.21992 0.93362 0.97050 1.04701 1.21970 0.91143 0.92704 0.88617 0.86645 1.86560 1.79582 1.55012 1.16212 1.22032 0.94570 0.84568 1.01881 1.44144 1.01774 1.07648 1.83916 1.17527 0.84992 0.92650 0.99659 1.20499 0.93629 0.96229 1.06416 1.21055 0.94091 0.98243 1.07847 1.19748 0.84428 0.95071 0.99687 1.83933 1.17944 1.30858 1.82482 1.21800 0.92246 0.82460 1.51707 0.88426 1.26522 0.94749 1.04633 0.96540 1.70209 1.02890 1.33601 1.49992 0.84550 0.78710 0.74691 0.78372 1.17497 1.19528 1.19509 1.20232 0.95737 0.93910 1.07698 1.20431 0.91014 0.98438 1.07039 0.88473 0.91234 0.91219 0.91517 0.91533 0.85636 0.85593 0.90121 0.90650 0.76239 0.91689 0.92275 0.75941 0.84363 0.86400 0.92183 0.87034 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 71.98 0.74 -0.16 16 2 C 0.05 0.61 6.19 71.98 0.45 1.05 16 3 O -0.36 -5.28 10.22 -51.33 -0.52 -5.81 16 4 C 0.46 7.09 7.96 71.24 0.57 7.66 16 5 O -0.54 -12.02 15.73 21.96 0.35 -11.67 16 6 C -0.10 -0.91 5.71 29.85 0.17 -0.74 16 7 C -0.13 -1.35 4.18 30.59 0.13 -1.22 16 8 C 0.12 1.22 3.05 30.59 0.09 1.31 16 9 H 0.12 1.08 8.14 -2.39 -0.02 1.07 16 10 O -0.57 -6.55 12.62 -148.98 -1.88 -8.43 16 11 C 0.09 1.52 4.57 86.38 0.40 1.92 16 12 N -0.74 -16.19 5.63 -339.26 -1.91 -18.10 16 13 C 0.15 4.81 6.66 38.21 0.25 5.07 16 14 C -0.15 -5.11 9.89 22.39 0.22 -4.89 16 15 C -0.19 -8.62 9.16 22.37 0.20 -8.42 16 16 C 0.06 3.10 6.65 22.59 0.15 3.25 16 17 O -0.24 -15.23 9.76 -23.09 -0.23 -15.45 16 18 C -0.41 -24.38 9.48 67.91 0.64 -23.74 16 19 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 20 C -0.03 -1.66 5.49 84.82 0.47 -1.20 16 21 N -0.93 -58.67 13.67 21.61 0.30 -58.37 16 22 Si 1.02 44.24 29.55 68.60 2.03 46.26 16 23 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 C -0.16 -6.86 9.98 22.37 0.22 -6.64 16 27 C -0.15 -5.06 9.30 22.39 0.21 -4.85 16 28 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.07 0.80 8.13 -2.39 -0.02 0.78 16 32 H 0.07 0.80 8.13 -2.38 -0.02 0.78 16 33 H 0.13 0.86 7.82 -2.39 -0.02 0.84 16 34 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 0.95 8.10 -2.39 -0.02 0.93 16 36 H 0.07 0.86 8.10 -2.38 -0.02 0.84 16 37 H 0.39 2.84 9.05 -74.06 -0.67 2.17 16 38 H 0.06 1.08 7.95 -2.39 -0.02 1.06 16 39 H 0.06 0.97 7.95 -2.39 -0.02 0.95 16 40 H 0.40 7.82 8.36 -92.71 -0.78 7.04 16 41 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 42 H 0.12 5.37 5.63 -2.91 -0.02 5.36 16 43 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 45 H 0.14 3.93 6.73 -2.91 -0.02 3.91 16 Total: -1.00 -79.92 383.35 2.62 -77.30 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.42 Total: 25.86 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.91 Total: -31.59 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -1.61 Total: -76.47 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -2.28 Total: -41.37 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -79.92 2.62 -77.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329140989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.480 kcal (2) G-P(sol) polarization free energy of solvation -79.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds