Wall clock time and date at job start Tue Mar 31 2020 13:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45203 * 109.46772 * 2 1 4 4 C 1.34233 * 116.99482 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00458 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99563 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.46803 * 180.02562 * 6 4 3 8 8 C 1.53007 * 109.46939 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.46929 * 54.99899 * 8 7 6 10 10 O 1.42895 * 109.46932 * 295.00019 * 8 7 6 11 11 C 1.52996 * 109.47082 * 175.00196 * 8 7 6 12 12 N 1.46500 * 109.47280 * 185.00034 * 11 8 7 13 13 C 1.39775 * 120.00282 * 179.97438 * 12 11 8 14 14 C 1.38950 * 120.00863 * 179.97438 * 13 12 11 15 15 C 1.38013 * 119.99674 * 180.02562 * 14 13 12 16 16 C 1.38892 * 120.00492 * 0.02562 * 15 14 13 17 17 O 1.35792 * 119.99674 * 179.97438 * 16 15 14 18 18 C 1.34812 * 116.99753 * 354.45248 * 17 16 15 19 19 H 1.08004 * 120.00465 * 5.06270 * 18 17 16 20 20 C 1.38630 * 120.00123 * 185.05788 * 18 17 16 21 21 N 1.31582 * 119.99830 * 180.02562 * 20 18 17 22 22 Si 1.86789 * 119.99957 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47302 * 89.99967 * 22 20 18 24 24 H 1.48506 * 109.47294 * 210.00065 * 22 20 18 25 25 H 1.48501 * 109.47405 * 330.00005 * 22 20 18 26 26 C 1.38903 * 120.01402 * 0.26776 * 16 15 14 27 27 C 1.38013 * 120.00179 * 359.45513 * 26 16 15 28 28 H 1.08997 * 109.46647 * 60.00095 * 1 2 3 29 29 H 1.09007 * 109.46664 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47160 * 299.99873 * 1 2 3 31 31 H 1.09000 * 109.47050 * 240.00384 * 2 1 3 32 32 H 1.09001 * 109.47135 * 119.99833 * 2 1 3 33 33 H 1.09000 * 109.46965 * 59.99954 * 6 4 3 34 34 H 1.09005 * 109.47198 * 299.99967 * 6 4 3 35 35 H 1.08999 * 109.47036 * 60.00076 * 7 6 4 36 36 H 1.08992 * 109.47278 * 299.99696 * 7 6 4 37 37 H 0.96705 * 114.00281 * 299.99682 * 10 8 7 38 38 H 1.08998 * 109.47625 * 64.99971 * 11 8 7 39 39 H 1.09004 * 109.46762 * 305.00018 * 11 8 7 40 40 H 0.97006 * 119.99958 * 0.02562 * 12 11 8 41 41 H 1.08004 * 120.00160 * 0.02562 * 14 13 12 42 42 H 1.07998 * 119.99585 * 179.97438 * 15 14 13 43 43 H 0.97001 * 119.99787 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.00005 * 179.70569 * 26 16 15 45 45 H 1.07996 * 120.00087 * 180.27490 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 6 5.4486 2.8574 0.0010 8 6 6.0334 4.2713 0.0010 9 1 5.6276 4.8323 0.8428 10 8 5.6892 4.9291 -1.2200 11 6 7.5562 4.1934 0.1266 12 7 8.1062 5.5459 0.2467 13 6 9.4858 5.7306 0.3748 14 6 10.0076 7.0134 0.4881 15 6 11.3698 7.1955 0.6141 16 6 12.2192 6.0966 0.6270 17 8 13.5596 6.2760 0.7504 18 6 14.0105 7.5465 0.7403 19 1 13.3098 8.3681 0.7198 20 6 15.3736 7.7984 0.7564 21 7 15.8136 9.0384 0.7472 22 14 16.5856 6.3775 0.7913 23 1 16.9265 5.9834 -0.5993 24 1 17.8194 6.7966 1.5037 25 1 15.9745 5.2227 1.4973 26 6 11.6984 4.8145 0.5076 27 6 10.3358 4.6315 0.3873 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5844 3.4693 0.8912 34 1 3.5851 3.4699 -0.8888 35 1 5.7845 2.3257 -0.8892 36 1 5.7846 2.3249 0.8907 37 1 6.0185 4.4841 -2.0129 38 1 7.9696 3.7104 -0.7588 39 1 7.8185 3.6145 1.0122 40 1 7.5129 6.3133 0.2380 41 1 9.3472 7.8679 0.4777 42 1 11.7754 8.1925 0.7018 43 1 16.7674 9.2146 0.7581 44 1 12.3595 3.9604 0.5128 45 1 9.9306 3.6344 0.2990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329141002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:14 Heat of formation + Delta-G solvation = -169.043816 kcal Electronic energy + Delta-G solvation = -25606.655116 eV Core-core repulsion = 21588.804481 eV Total energy + Delta-G solvation = -4017.850635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55231 -40.81990 -39.46380 -38.39292 -37.69576 -35.37530 -34.27235 -34.04513 -32.58116 -31.86685 -30.55421 -28.54018 -27.01110 -25.52049 -24.13413 -23.56026 -22.47792 -22.17835 -21.57122 -19.66436 -19.07709 -18.79650 -18.01008 -17.87842 -17.32587 -17.18834 -16.92962 -16.54079 -15.85772 -15.61664 -15.52837 -15.38003 -15.12740 -14.71925 -14.53736 -14.34091 -14.11719 -13.91319 -13.83901 -13.83854 -13.65580 -13.21868 -13.01040 -12.93378 -12.88126 -12.54974 -12.50997 -12.36726 -12.04606 -11.93731 -11.75393 -11.57632 -11.53771 -11.19519 -11.00482 -10.95914 -10.27212 -9.79158 -8.42609 -7.96295 -6.10232 0.57079 0.89354 1.16307 1.33704 1.38382 1.55118 1.67599 2.33432 2.61173 2.85599 3.17869 3.31142 3.52063 3.62848 3.68811 3.97817 4.03495 4.06345 4.11542 4.17162 4.21464 4.28206 4.33943 4.35366 4.57190 4.64499 4.68417 4.75100 4.79042 4.86834 4.90836 4.94293 5.11189 5.16096 5.22205 5.24113 5.26077 5.48157 5.49770 5.63295 5.84624 5.87229 6.15089 6.60774 6.70795 6.82353 6.93228 7.03976 7.73759 8.69787 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.040300 B = 0.001637 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.629492 B =17100.416539 C =17653.108691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.460 3.540 5 O -0.544 6.544 6 C -0.103 4.103 7 C -0.132 4.132 8 C 0.114 3.886 9 H 0.114 0.886 10 O -0.568 6.568 11 C 0.095 3.905 12 N -0.741 5.741 13 C 0.161 3.839 14 C -0.152 4.152 15 C -0.187 4.187 16 C 0.064 3.936 17 O -0.255 6.255 18 C -0.391 4.391 19 H 0.078 0.922 20 C 0.005 3.995 21 N -0.931 5.931 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.269 1.269 25 H -0.264 1.264 26 C -0.142 4.142 27 C -0.149 4.149 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.388 0.612 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.404 0.596 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.282 0.718 44 H 0.128 0.872 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.123 -17.097 -2.452 36.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.305 3.695 5 O -0.434 6.434 6 C -0.141 4.141 7 C -0.170 4.170 8 C 0.054 3.946 9 H 0.132 0.868 10 O -0.375 6.375 11 C -0.030 4.030 12 N -0.375 5.375 13 C 0.059 3.941 14 C -0.174 4.174 15 C -0.206 4.206 16 C 0.016 3.984 17 O -0.164 6.164 18 C -0.468 4.468 19 H 0.095 0.905 20 C -0.192 4.192 21 N -0.573 5.573 22 Si 0.794 3.206 23 H -0.192 1.192 24 H -0.194 1.194 25 H -0.188 1.188 26 C -0.162 4.162 27 C -0.171 4.171 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.238 0.762 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.239 0.761 41 H 0.151 0.849 42 H 0.125 0.875 43 H 0.091 0.909 44 H 0.146 0.854 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -31.934 -17.237 -2.034 36.346 hybrid contribution 1.065 -0.156 -0.282 1.113 sum -30.869 -17.394 -2.316 35.508 Atomic orbital electron populations 1.21827 0.90639 1.04275 1.03734 1.23247 0.96990 0.79429 1.02404 1.86525 1.24557 1.33483 1.83664 1.24411 0.80428 0.93654 0.71006 1.90676 1.61039 1.44662 1.47016 1.21397 0.95547 0.89137 1.07973 1.21988 0.93261 0.96980 1.04791 1.21980 0.91318 0.92727 0.88565 0.86801 1.86574 1.79640 1.55071 1.16237 1.22069 0.94548 0.84436 1.01955 1.44230 1.01972 1.07926 1.83369 1.17570 0.85119 0.92600 0.98799 1.20470 0.93634 0.96402 1.06894 1.21069 0.94262 0.98334 1.06965 1.19472 0.83240 0.95043 1.00684 1.83500 1.19506 1.28758 1.84653 1.20680 0.93176 0.81222 1.51748 0.90493 1.25244 0.98203 0.99703 0.96068 1.69753 1.16134 1.19983 1.51428 0.85204 0.77461 0.78831 0.79105 1.19245 1.19404 1.18828 1.20296 0.95865 0.93747 1.06285 1.20497 0.91071 0.98455 1.07113 0.91253 0.88467 0.91250 0.91491 0.91495 0.85689 0.85701 0.90492 0.90042 0.76192 0.91901 0.91387 0.76074 0.84934 0.87516 0.90870 0.85447 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.29 71.98 0.74 -0.12 16 2 C 0.05 0.59 6.19 71.98 0.45 1.03 16 3 O -0.37 -5.13 10.22 -51.45 -0.53 -5.66 16 4 C 0.46 6.82 7.96 71.24 0.57 7.38 16 5 O -0.54 -11.55 15.73 21.97 0.35 -11.20 16 6 C -0.10 -0.86 5.71 29.85 0.17 -0.69 16 7 C -0.13 -1.21 4.18 30.60 0.13 -1.09 16 8 C 0.11 1.11 3.00 30.60 0.09 1.20 16 9 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 10 O -0.57 -6.30 12.82 -148.98 -1.91 -8.21 16 11 C 0.09 1.38 4.55 86.38 0.39 1.77 16 12 N -0.74 -15.47 5.68 -339.27 -1.93 -17.40 16 13 C 0.16 4.83 6.66 38.22 0.25 5.08 16 14 C -0.15 -5.35 9.89 22.39 0.22 -5.13 16 15 C -0.19 -8.43 9.16 22.37 0.20 -8.23 16 16 C 0.06 3.09 6.65 22.59 0.15 3.24 16 17 O -0.26 -14.35 8.58 -23.02 -0.20 -14.55 16 18 C -0.39 -23.81 9.94 67.91 0.68 -23.14 16 19 H 0.08 4.90 5.43 -2.91 -0.02 4.88 16 20 C 0.00 0.28 5.49 84.82 0.47 0.75 16 21 N -0.93 -57.18 13.96 21.61 0.30 -56.88 16 22 Si 0.97 46.96 28.61 68.60 1.96 48.92 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 26 C -0.14 -5.56 9.98 22.38 0.22 -5.34 16 27 C -0.15 -4.64 9.30 22.39 0.21 -4.43 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 32 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 33 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.13 0.80 7.82 -2.38 -0.02 0.78 16 35 H 0.08 0.78 8.10 -2.39 -0.02 0.76 16 36 H 0.08 0.87 8.10 -2.39 -0.02 0.85 16 37 H 0.39 2.51 9.05 -74.05 -0.67 1.84 16 38 H 0.06 0.91 7.95 -2.39 -0.02 0.89 16 39 H 0.07 1.00 7.95 -2.38 -0.02 0.98 16 40 H 0.40 7.63 8.49 -92.70 -0.79 6.84 16 41 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 42 H 0.11 5.31 5.63 -2.91 -0.02 5.30 16 43 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 44 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 45 H 0.15 3.53 6.73 -2.91 -0.02 3.51 16 Total: -1.00 -76.07 382.53 2.55 -73.51 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -0.44 Total: 19.16 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 4.94 Total: -27.70 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -1.63 Total: -74.27 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -2.29 Total: -39.62 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.96 Total: 48.92 kcal Total: -76.07 2.55 -73.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329141002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.530 kcal (2) G-P(sol) polarization free energy of solvation -76.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds