Wall clock time and date at job start Tue Mar 31 2020 14:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86797 * 120.00593 * 2 1 4 4 H 1.48496 * 109.47578 * 274.98819 * 3 2 1 5 5 H 1.48504 * 109.46663 * 34.98397 * 3 2 1 6 6 H 1.48495 * 109.47508 * 154.98138 * 3 2 1 7 7 C 1.38987 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00762 * 185.93612 * 7 2 1 9 9 N 1.37326 * 119.99830 * 5.93343 * 7 2 1 10 10 C 1.36494 * 126.06869 * 174.13639 * 9 7 2 11 11 C 1.35685 * 107.50678 * 180.02562 * 10 9 7 12 12 N 1.40593 * 126.07815 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99694 * 180.02562 * 12 11 10 14 14 O 1.21307 * 119.99739 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00012 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.47021 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46900 * 179.97438 * 16 15 13 18 18 O 1.42904 * 109.47258 * 179.97438 * 17 16 15 19 19 C 1.42895 * 114.00436 * 180.02562 * 18 17 16 20 20 C 1.53177 * 109.54294 * 269.56146 * 19 18 17 21 21 C 1.53098 * 109.16300 * 183.15379 * 20 19 18 22 22 O 1.42897 * 109.41385 * 57.60351 * 21 20 19 23 23 C 1.42900 * 114.09861 * 298.84033 * 22 21 20 24 24 C 1.53091 * 109.41540 * 61.16187 * 23 22 21 25 25 C 1.40646 * 107.83533 * 0.26169 * 11 10 9 26 26 N 1.30905 * 108.38812 * 359.55394 * 25 11 10 27 27 H 0.97003 * 119.99529 * 359.97438 * 1 2 3 28 28 H 1.07996 * 126.24794 * 0.04605 * 10 9 7 29 29 H 0.96992 * 120.00443 * 359.97438 * 12 11 10 30 30 H 1.09004 * 109.47009 * 59.99593 * 15 13 12 31 31 H 1.08996 * 109.46926 * 299.99762 * 15 13 12 32 32 H 1.08998 * 109.47325 * 59.99603 * 16 15 13 33 33 H 1.09003 * 109.46787 * 299.99661 * 16 15 13 34 34 H 1.09005 * 109.47072 * 60.00364 * 17 16 15 35 35 H 1.08996 * 109.47110 * 299.99921 * 17 16 15 36 36 H 1.09003 * 109.61246 * 29.77775 * 19 18 17 37 37 H 1.09004 * 109.51700 * 303.05624 * 20 19 18 38 38 H 1.08993 * 109.52683 * 63.24118 * 20 19 18 39 39 H 1.08998 * 109.47405 * 297.61799 * 21 20 19 40 40 H 1.08994 * 109.47675 * 177.58809 * 21 20 19 41 41 H 1.08994 * 109.48445 * 301.17715 * 23 22 21 42 42 H 1.09004 * 109.49214 * 181.15077 * 23 22 21 43 43 H 1.08997 * 109.52501 * 182.48190 * 24 23 22 44 44 H 1.09010 * 109.51981 * 62.29395 * 24 23 22 45 45 H 1.08005 * 125.80394 * 179.70165 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2471 1.6176 0.0000 4 1 2.3893 2.1072 -1.3947 5 1 1.5012 2.6199 0.8028 6 1 3.5933 1.4119 0.5921 7 6 2.0079 -1.2037 -0.0005 8 1 3.0835 -1.2064 0.0962 9 7 1.3267 -2.3897 -0.1240 10 6 1.8861 -3.6281 -0.2519 11 6 0.8731 -4.5258 -0.3463 12 7 1.0108 -5.9176 -0.4901 13 6 -0.0848 -6.6982 -0.5731 14 8 -1.1897 -6.1999 -0.5233 15 6 0.0628 -8.1899 -0.7279 16 6 -1.3229 -8.8351 -0.7966 17 6 -1.1730 -10.3495 -0.9543 18 8 -2.4672 -10.9522 -1.0180 19 6 -2.4400 -12.3733 -1.1655 20 6 -2.4401 -12.7340 -2.6542 21 6 -2.4905 -14.2570 -2.8022 22 8 -3.6516 -14.7605 -2.1387 23 6 -3.6831 -14.4943 -0.7351 24 6 -3.6806 -12.9809 -0.5040 25 6 -0.3392 -3.8158 -0.2803 26 7 -0.0654 -2.5432 -0.1416 27 1 -0.4849 0.8401 0.0004 28 1 2.9423 -3.8526 -0.2736 29 1 1.8942 -6.3159 -0.5304 30 1 0.6083 -8.5916 0.1261 31 1 0.6112 -8.4076 -1.6443 32 1 -1.8687 -8.4334 -1.6503 33 1 -1.8709 -8.6173 0.1201 34 1 -0.6270 -10.7514 -0.1008 35 1 -0.6251 -10.5668 -1.8712 36 1 -1.5424 -12.7730 -0.6935 37 1 -3.3124 -12.2921 -3.1359 38 1 -1.5324 -12.3524 -3.1215 39 1 -1.5979 -14.6952 -2.3558 40 1 -2.5340 -14.5181 -3.8595 41 1 -2.8062 -14.9357 -0.2616 42 1 -4.5857 -14.9266 -0.3030 43 1 -3.6601 -12.7759 0.5664 44 1 -4.5780 -12.5441 -0.9423 45 1 -1.3279 -4.2474 -0.3324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329259900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:51 Heat of formation + Delta-G solvation = -59.253334 kcal Electronic energy + Delta-G solvation = -25945.495143 eV Core-core repulsion = 21964.698132 eV Total energy + Delta-G solvation = -3980.797011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.03274 -39.87594 -38.68044 -37.81164 -34.34039 -33.92376 -33.12697 -32.29850 -31.58141 -30.22604 -28.25404 -26.78626 -24.86582 -24.44217 -24.02382 -22.16621 -20.97121 -20.71864 -19.97817 -19.37700 -17.56968 -17.34945 -16.66301 -16.56522 -16.21978 -15.94351 -15.44286 -15.32334 -15.19149 -15.06482 -14.39207 -14.13395 -14.04581 -13.68495 -13.34541 -13.10775 -12.87636 -12.86487 -12.56940 -12.13663 -11.82228 -11.76561 -11.66750 -11.53233 -11.40179 -11.26211 -11.10023 -10.92073 -10.91727 -10.75768 -10.52189 -10.12511 -10.11594 -9.76088 -9.16889 -9.13034 -8.78280 -8.03954 -6.67942 -6.55035 -4.21690 2.85636 3.04722 3.05925 3.10846 3.15380 3.43843 3.69451 3.71112 3.92206 4.29799 4.35365 4.43946 4.51118 4.62693 4.72644 4.74129 4.84544 4.87763 4.94138 5.00376 5.02243 5.05853 5.19197 5.21835 5.28213 5.30427 5.39536 5.43478 5.56309 5.61739 5.70711 5.79457 6.06252 6.24382 6.26549 6.48811 6.72020 6.92619 6.97563 6.98709 7.15267 7.26631 7.87722 8.20960 8.31357 8.65676 8.89800 9.39831 9.68976 10.41343 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.055634 B = 0.001588 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.170602 B =17626.737303 C =17836.889639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.325 4.325 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.084 4.084 11 C -0.061 4.061 12 N -0.627 5.627 13 C 0.497 3.503 14 O -0.535 6.535 15 C -0.132 4.132 16 C -0.102 4.102 17 C 0.063 3.937 18 O -0.376 6.376 19 C 0.089 3.911 20 C -0.180 4.180 21 C 0.064 3.936 22 O -0.383 6.383 23 C 0.064 3.936 24 C -0.155 4.155 25 C -0.033 4.033 26 N -0.261 5.261 27 H 0.275 0.725 28 H 0.145 0.855 29 H 0.396 0.604 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.736 -25.986 -2.466 26.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.457 4.457 8 H 0.134 0.866 9 N 0.089 4.911 10 C -0.235 4.235 11 C -0.166 4.166 12 N -0.269 5.269 13 C 0.283 3.717 14 O -0.412 6.412 15 C -0.172 4.172 16 C -0.140 4.140 17 C -0.014 4.014 18 O -0.295 6.295 19 C 0.031 3.969 20 C -0.218 4.218 21 C -0.013 4.013 22 O -0.301 6.301 23 C -0.013 4.013 24 C -0.193 4.193 25 C -0.209 4.209 26 N -0.093 5.093 27 H 0.085 0.915 28 H 0.162 0.838 29 H 0.229 0.771 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.062 -24.282 -2.376 24.421 hybrid contribution 1.910 -0.261 -0.007 1.928 sum 0.848 -24.543 -2.382 24.673 Atomic orbital electron populations 1.70227 1.06157 1.27950 1.35298 1.25641 0.95681 1.00259 0.95488 0.85817 0.79434 0.80080 0.78838 1.19656 1.20103 1.18805 1.19871 0.92126 0.80736 1.52983 0.86643 1.44546 1.03995 1.03713 1.38894 1.21265 0.96793 0.85855 1.19591 1.17306 0.94274 0.81901 1.23130 1.42550 1.08269 1.05236 1.70881 1.20321 0.84545 0.88454 0.78389 1.90611 1.25603 1.75032 1.49957 1.21468 0.99030 0.92859 1.03888 1.21199 0.96309 0.91473 1.05061 1.22593 0.84775 0.94234 0.99771 1.87967 1.28499 1.18988 1.94092 1.22056 0.98175 0.82021 0.94625 1.22753 1.04064 0.97213 0.97789 1.22562 0.88157 0.92364 0.98244 1.87949 1.43016 1.78291 1.20883 1.22588 1.02507 0.94026 0.82167 1.22310 0.98942 0.95985 1.02045 1.24115 0.98039 0.90912 1.07825 1.78243 0.90309 1.15185 1.25524 0.91482 0.83757 0.77096 0.89188 0.89189 0.90170 0.90164 0.93355 0.93397 0.92170 0.89908 0.90592 0.93123 0.88471 0.93044 0.88217 0.90044 0.89905 0.80730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.76 11.84 55.49 0.66 -21.10 16 2 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 3 Si 0.93 19.05 29.56 -169.99 -5.02 14.02 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.32 -8.68 10.24 -14.81 -0.15 -8.83 16 8 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 9 N -0.14 -3.99 3.74 -11.41 -0.04 -4.03 16 10 C -0.08 -1.99 11.49 -16.39 -0.19 -2.18 16 11 C -0.06 -1.41 6.90 -83.84 -0.58 -1.98 16 12 N -0.63 -10.93 5.47 -10.00 -0.05 -10.98 16 13 C 0.50 8.40 7.80 -10.98 -0.09 8.32 16 14 O -0.53 -11.46 13.13 5.53 0.07 -11.38 16 15 C -0.13 -1.43 5.70 -27.88 -0.16 -1.59 16 16 C -0.10 -1.20 4.87 -26.73 -0.13 -1.33 16 17 C 0.06 0.58 5.76 37.16 0.21 0.79 16 18 O -0.38 -4.11 10.00 -35.23 -0.35 -4.46 16 19 C 0.09 0.73 2.70 -26.55 -0.07 0.66 16 20 C -0.18 -1.34 5.76 -26.59 -0.15 -1.50 16 21 C 0.06 0.41 6.84 37.21 0.25 0.67 16 22 O -0.38 -3.25 10.76 -35.23 -0.38 -3.63 16 23 C 0.06 0.41 6.84 37.20 0.25 0.67 16 24 C -0.16 -1.17 5.79 -26.60 -0.15 -1.32 16 25 C -0.03 -0.89 10.85 -17.04 -0.18 -1.08 16 26 N -0.26 -7.73 10.42 30.80 0.32 -7.41 16 27 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 28 H 0.14 2.83 8.06 -52.49 -0.42 2.41 16 29 H 0.40 5.16 8.82 -40.82 -0.36 4.80 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.05 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.05 0.38 8.00 -51.93 -0.42 -0.04 16 36 H 0.06 0.42 7.79 -51.93 -0.40 0.01 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.50 7.99 -51.93 -0.42 0.08 16 39 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.18 4.66 5.92 -52.48 -0.31 4.35 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -35.28 373.57 -7.34 -42.63 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.94 Total: 8.30 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -1.23 Total: -7.59 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.88 Total: -43.52 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.66 Total: -19.47 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.28 -7.34 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329259900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.626 kcal (2) G-P(sol) polarization free energy of solvation -35.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds