Wall clock time and date at job start Tue Mar 31 2020 14:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86797 * 120.00593 * 2 1 4 4 H 1.48496 * 109.47578 * 274.98819 * 3 2 1 5 5 H 1.48504 * 109.46663 * 34.98397 * 3 2 1 6 6 H 1.48495 * 109.47508 * 154.98138 * 3 2 1 7 7 C 1.38987 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00762 * 185.93612 * 7 2 1 9 9 N 1.37326 * 119.99830 * 5.93343 * 7 2 1 10 10 C 1.36494 * 126.06869 * 174.13639 * 9 7 2 11 11 C 1.35685 * 107.50678 * 180.02562 * 10 9 7 12 12 N 1.40593 * 126.07815 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99694 * 180.02562 * 12 11 10 14 14 O 1.21307 * 119.99739 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00012 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.47021 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46900 * 179.97438 * 16 15 13 18 18 O 1.42904 * 109.47258 * 179.97438 * 17 16 15 19 19 C 1.42895 * 114.00436 * 180.02562 * 18 17 16 20 20 C 1.53177 * 109.54294 * 269.56146 * 19 18 17 21 21 C 1.53098 * 109.16300 * 183.15379 * 20 19 18 22 22 O 1.42897 * 109.41385 * 57.60351 * 21 20 19 23 23 C 1.42900 * 114.09861 * 298.84033 * 22 21 20 24 24 C 1.53091 * 109.41540 * 61.16187 * 23 22 21 25 25 C 1.40646 * 107.83533 * 0.26169 * 11 10 9 26 26 N 1.30905 * 108.38812 * 359.55394 * 25 11 10 27 27 H 0.97003 * 119.99529 * 359.97438 * 1 2 3 28 28 H 1.07996 * 126.24794 * 0.04605 * 10 9 7 29 29 H 0.96992 * 120.00443 * 359.97438 * 12 11 10 30 30 H 1.09004 * 109.47009 * 59.99593 * 15 13 12 31 31 H 1.08996 * 109.46926 * 299.99762 * 15 13 12 32 32 H 1.08998 * 109.47325 * 59.99603 * 16 15 13 33 33 H 1.09003 * 109.46787 * 299.99661 * 16 15 13 34 34 H 1.09005 * 109.47072 * 60.00364 * 17 16 15 35 35 H 1.08996 * 109.47110 * 299.99921 * 17 16 15 36 36 H 1.09003 * 109.61246 * 29.77775 * 19 18 17 37 37 H 1.09004 * 109.51700 * 303.05624 * 20 19 18 38 38 H 1.08993 * 109.52683 * 63.24118 * 20 19 18 39 39 H 1.08998 * 109.47405 * 297.61799 * 21 20 19 40 40 H 1.08994 * 109.47675 * 177.58809 * 21 20 19 41 41 H 1.08994 * 109.48445 * 301.17715 * 23 22 21 42 42 H 1.09004 * 109.49214 * 181.15077 * 23 22 21 43 43 H 1.08997 * 109.52501 * 182.48190 * 24 23 22 44 44 H 1.09010 * 109.51981 * 62.29395 * 24 23 22 45 45 H 1.08005 * 125.80394 * 179.70165 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2471 1.6176 0.0000 4 1 2.3893 2.1072 -1.3947 5 1 1.5012 2.6199 0.8028 6 1 3.5933 1.4119 0.5921 7 6 2.0079 -1.2037 -0.0005 8 1 3.0835 -1.2064 0.0962 9 7 1.3267 -2.3897 -0.1240 10 6 1.8861 -3.6281 -0.2519 11 6 0.8731 -4.5258 -0.3463 12 7 1.0108 -5.9176 -0.4901 13 6 -0.0848 -6.6982 -0.5731 14 8 -1.1897 -6.1999 -0.5233 15 6 0.0628 -8.1899 -0.7279 16 6 -1.3229 -8.8351 -0.7966 17 6 -1.1730 -10.3495 -0.9543 18 8 -2.4672 -10.9522 -1.0180 19 6 -2.4400 -12.3733 -1.1655 20 6 -2.4401 -12.7340 -2.6542 21 6 -2.4905 -14.2570 -2.8022 22 8 -3.6516 -14.7605 -2.1387 23 6 -3.6831 -14.4943 -0.7351 24 6 -3.6806 -12.9809 -0.5040 25 6 -0.3392 -3.8158 -0.2803 26 7 -0.0654 -2.5432 -0.1416 27 1 -0.4849 0.8401 0.0004 28 1 2.9423 -3.8526 -0.2736 29 1 1.8942 -6.3159 -0.5304 30 1 0.6083 -8.5916 0.1261 31 1 0.6112 -8.4076 -1.6443 32 1 -1.8687 -8.4334 -1.6503 33 1 -1.8709 -8.6173 0.1201 34 1 -0.6270 -10.7514 -0.1008 35 1 -0.6251 -10.5668 -1.8712 36 1 -1.5424 -12.7730 -0.6935 37 1 -3.3124 -12.2921 -3.1359 38 1 -1.5324 -12.3524 -3.1215 39 1 -1.5979 -14.6952 -2.3558 40 1 -2.5340 -14.5181 -3.8595 41 1 -2.8062 -14.9357 -0.2616 42 1 -4.5857 -14.9266 -0.3030 43 1 -3.6601 -12.7759 0.5664 44 1 -4.5780 -12.5441 -0.9423 45 1 -1.3279 -4.2474 -0.3324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329259900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:50 Heat of formation + Delta-G solvation = -84.943576 kcal Electronic energy + Delta-G solvation = -25946.609155 eV Core-core repulsion = 21964.698132 eV Total energy + Delta-G solvation = -3981.911023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.68985 -40.60518 -40.22753 -38.53335 -35.94850 -34.97236 -34.85846 -33.05080 -32.21733 -32.09554 -29.89448 -28.00852 -26.57208 -25.15358 -24.58155 -23.25275 -22.71224 -21.61256 -21.21529 -21.07785 -19.32050 -18.20555 -17.68742 -17.39293 -17.24133 -16.95560 -16.85231 -16.78136 -16.13250 -15.80282 -15.72163 -15.33233 -15.12280 -14.88093 -14.75332 -14.66616 -14.04811 -13.74090 -13.50315 -13.30612 -13.24099 -12.98896 -12.92738 -12.79836 -12.48913 -12.37418 -12.21179 -12.06553 -11.84188 -11.80916 -11.65621 -11.32228 -11.01024 -10.82424 -10.67264 -10.61482 -10.41819 -10.09859 -8.50976 -8.47246 -6.24428 1.23692 1.39670 1.56281 1.58205 1.88833 2.05618 2.27729 2.54601 2.67610 2.94738 3.00121 3.08225 3.75641 3.76945 3.85142 3.98243 4.04873 4.06236 4.17285 4.26739 4.36883 4.44274 4.49064 4.53723 4.57295 4.60791 4.63603 4.68372 4.76433 4.77032 4.84226 5.01225 5.05466 5.10930 5.11667 5.16634 5.21207 5.30017 5.33324 5.53163 5.96792 6.23392 6.33026 6.33415 6.74516 6.82609 7.45125 7.50922 7.69817 8.52439 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.055634 B = 0.001588 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.170602 B =17626.737303 C =17836.889639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.020 2.980 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.241 1.241 7 C -0.356 4.356 8 H 0.142 0.858 9 N -0.170 5.170 10 C -0.080 4.080 11 C -0.045 4.045 12 N -0.618 5.618 13 C 0.491 3.509 14 O -0.586 6.586 15 C -0.114 4.114 16 C -0.101 4.101 17 C 0.067 3.933 18 O -0.407 6.407 19 C 0.084 3.916 20 C -0.178 4.178 21 C 0.062 3.938 22 O -0.406 6.406 23 C 0.064 3.936 24 C -0.155 4.155 25 C -0.063 4.063 26 N -0.313 5.313 27 H 0.276 0.724 28 H 0.190 0.810 29 H 0.422 0.578 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.317 -28.123 -2.493 28.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.164 1.164 7 C -0.487 4.487 8 H 0.159 0.841 9 N 0.061 4.939 10 C -0.230 4.230 11 C -0.151 4.151 12 N -0.264 5.264 13 C 0.280 3.720 14 O -0.466 6.466 15 C -0.153 4.153 16 C -0.139 4.139 17 C -0.009 4.009 18 O -0.327 6.327 19 C 0.026 3.974 20 C -0.216 4.216 21 C -0.014 4.014 22 O -0.325 6.325 23 C -0.012 4.012 24 C -0.193 4.193 25 C -0.238 4.238 26 N -0.146 5.146 27 H 0.086 0.914 28 H 0.207 0.793 29 H 0.260 0.740 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.564 -26.492 -2.406 26.724 hybrid contribution 0.740 0.236 -0.006 0.777 sum 3.304 -26.255 -2.412 26.572 Atomic orbital electron populations 1.70415 1.08540 1.29066 1.37452 1.26911 0.96442 1.04436 0.94115 0.84565 0.78555 0.74083 0.78907 1.19198 1.20221 1.16391 1.20641 0.93447 0.81063 1.53535 0.84063 1.44850 1.03519 1.05310 1.40227 1.22039 0.98859 0.84549 1.17570 1.17406 0.92592 0.84690 1.20453 1.42537 1.10149 1.02791 1.70876 1.21570 0.83380 0.90931 0.76135 1.90607 1.27779 1.76507 1.51703 1.21470 0.99159 0.87339 1.07350 1.21135 0.96423 0.93825 1.02558 1.22587 0.84573 0.91977 1.01801 1.87939 1.29761 1.20673 1.94361 1.22243 0.99118 0.80745 0.95251 1.22726 1.03574 0.97980 0.97281 1.22689 0.88306 0.91530 0.98920 1.87919 1.44150 1.78508 1.21959 1.22696 1.03912 0.93098 0.81529 1.22321 0.97991 0.96876 1.02142 1.24146 0.99078 0.91195 1.09424 1.78134 0.92366 1.16717 1.27356 0.91449 0.79301 0.74039 0.85342 0.85426 0.92949 0.92785 0.91027 0.91289 0.90078 0.92180 0.89424 0.91222 0.87619 0.91181 0.87299 0.89539 0.92065 0.81901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.61 11.84 21.66 0.26 -48.35 16 2 C -0.01 -0.40 5.50 84.95 0.47 0.06 16 3 Si 1.02 38.92 29.56 68.60 2.03 40.94 16 4 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.24 -8.21 7.11 99.48 0.71 -7.50 16 7 C -0.36 -19.02 10.24 84.01 0.86 -18.16 16 8 H 0.14 6.49 7.84 -2.91 -0.02 6.47 16 9 N -0.17 -9.54 3.74 -190.01 -0.71 -10.25 16 10 C -0.08 -3.69 11.49 83.38 0.96 -2.73 16 11 C -0.05 -2.08 6.90 37.73 0.26 -1.82 16 12 N -0.62 -20.21 5.47 -303.91 -1.66 -21.88 16 13 C 0.49 15.99 7.80 87.66 0.68 16.67 16 14 O -0.59 -25.87 13.13 -3.11 -0.04 -25.91 16 15 C -0.11 -2.07 5.70 29.85 0.17 -1.90 16 16 C -0.10 -2.25 4.87 30.59 0.15 -2.10 16 17 C 0.07 1.05 5.76 71.98 0.41 1.46 16 18 O -0.41 -8.50 10.00 -148.98 -1.49 -9.98 16 19 C 0.08 1.24 2.70 30.71 0.08 1.32 16 20 C -0.18 -2.40 5.76 30.69 0.18 -2.22 16 21 C 0.06 0.69 6.84 72.01 0.49 1.18 16 22 O -0.41 -6.39 10.76 -148.98 -1.60 -7.99 16 23 C 0.06 0.73 6.84 72.01 0.49 1.22 16 24 C -0.16 -2.23 5.79 30.68 0.18 -2.06 16 25 C -0.06 -3.53 10.85 85.42 0.93 -2.61 16 26 N -0.31 -19.36 10.42 -56.47 -0.59 -19.95 16 27 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 28 H 0.19 6.74 8.06 -2.91 -0.02 6.71 16 29 H 0.42 9.29 8.82 -92.71 -0.82 8.47 16 30 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.43 8.10 -2.39 -0.02 1.42 16 33 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 34 H 0.07 0.81 8.09 -2.38 -0.02 0.79 16 35 H 0.07 0.81 8.00 -2.39 -0.02 0.79 16 36 H 0.08 0.85 7.79 -2.39 -0.02 0.83 16 37 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 0.95 7.99 -2.39 -0.02 0.93 16 39 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.16 9.32 5.92 -2.91 -0.02 9.30 16 Total: -1.00 -83.81 373.57 2.68 -81.12 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.18 Total: 33.93 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 6.31 Total: -11.68 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -2.70 Total: -100.43 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -3.13 Total: -43.88 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.94 kcal Total: -83.81 2.68 -81.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329259900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.819 kcal (2) G-P(sol) polarization free energy of solvation -83.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds