Wall clock time and date at job start Tue Mar 31 2020 14:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99817 * 2 1 4 4 C 1.52999 * 109.46917 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46758 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.46889 * 180.02562 * 5 4 3 7 7 C 1.42905 * 113.99836 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47100 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47013 * 179.97438 * 8 7 6 10 10 O 1.21288 * 120.00547 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00115 * 180.02562 * 9 8 7 12 12 C 1.39981 * 120.00350 * 175.49199 * 11 9 8 13 13 C 1.38922 * 120.00283 * 215.12488 * 12 11 9 14 14 C 1.38008 * 120.00014 * 180.02562 * 13 12 11 15 15 C 1.38910 * 119.99976 * 0.02562 * 14 13 12 16 16 O 1.35774 * 119.99471 * 179.97438 * 15 14 13 17 17 C 1.34808 * 117.00313 * 5.34797 * 16 15 14 18 18 H 1.08002 * 120.00230 * 354.95457 * 17 16 15 19 19 C 1.38633 * 120.00210 * 174.96513 * 17 16 15 20 20 N 1.31575 * 119.99815 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00323 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47187 * 59.99558 * 21 19 17 23 23 H 1.48503 * 109.47384 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46741 * 299.99567 * 21 19 17 25 25 C 1.38907 * 120.00174 * 0.25692 * 15 14 13 26 26 C 1.37999 * 120.00277 * 359.44446 * 25 15 14 27 27 H 1.08998 * 109.47484 * 299.99940 * 1 2 3 28 28 H 1.09006 * 109.46752 * 60.00098 * 1 2 3 29 29 H 1.09006 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46990 * 60.00033 * 3 2 1 31 31 H 1.08991 * 109.47303 * 300.00158 * 3 2 1 32 32 H 1.08998 * 109.47075 * 60.01135 * 4 3 2 33 33 H 1.08991 * 109.47655 * 300.00423 * 4 3 2 34 34 H 1.09003 * 109.47173 * 60.00499 * 5 4 3 35 35 H 1.09000 * 109.47078 * 300.00325 * 5 4 3 36 36 H 1.08994 * 109.47087 * 60.00062 * 7 6 5 37 37 H 1.08996 * 109.46962 * 299.99996 * 7 6 5 38 38 H 1.09008 * 109.46923 * 60.00107 * 8 7 6 39 39 H 1.08997 * 109.46957 * 300.00240 * 8 7 6 40 40 H 0.97001 * 119.99577 * 355.49141 * 11 9 8 41 41 H 1.07997 * 119.99847 * 359.97438 * 13 12 11 42 42 H 1.07994 * 119.99782 * 179.97438 * 14 13 12 43 43 H 0.97000 * 119.99968 * 180.02562 * 20 19 17 44 44 H 1.08008 * 119.99608 * 179.70477 * 25 15 14 45 45 H 1.07999 * 119.99955 * 180.28029 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 8 5.5822 2.4697 0.0013 7 6 6.2647 3.7253 0.0025 8 6 7.7756 3.4845 0.0030 9 6 8.4952 4.8085 0.0036 10 8 7.8621 5.8430 0.0041 11 7 9.8426 4.8432 0.0036 12 6 10.5112 6.0693 -0.0911 13 6 11.7089 6.1553 -0.7897 14 6 12.3684 7.3641 -0.8827 15 6 11.8348 8.4947 -0.2772 16 8 12.4839 9.6837 -0.3682 17 6 13.5805 9.7241 -1.1512 18 1 13.9529 8.8181 -1.6060 19 6 14.2304 10.9285 -1.3724 20 7 13.7766 12.0323 -0.8185 21 14 15.7504 10.9843 -2.4567 22 1 15.4038 10.5080 -3.8200 23 1 16.2530 12.3796 -2.5333 24 1 16.8026 10.1096 -1.8795 25 6 10.6402 8.4075 0.4264 26 6 9.9776 7.2002 0.5141 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8574 0.6438 -0.8892 33 1 3.8567 0.6439 0.8907 34 1 3.8357 3.1232 0.8913 35 1 3.8363 3.1237 -0.8887 36 1 5.9867 4.2890 0.8929 37 1 5.9868 4.2906 -0.8870 38 1 8.0540 2.9204 -0.8873 39 1 8.0531 2.9192 0.8927 40 1 10.3490 4.0184 0.0693 41 1 12.1244 5.2760 -1.2594 42 1 13.2996 7.4308 -1.4254 43 1 14.2311 12.8751 -0.9735 44 1 10.2278 9.2856 0.9012 45 1 9.0465 7.1335 1.0573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333777992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:42 Heat of formation + Delta-G solvation = -133.584900 kcal Electronic energy + Delta-G solvation = -25217.895585 eV Core-core repulsion = 21201.582564 eV Total energy + Delta-G solvation = -4016.313021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.24050 -38.87596 -38.60341 -37.97818 -36.52403 -34.00946 -33.55802 -32.22551 -31.43449 -30.23072 -28.01583 -27.41139 -25.50802 -25.17594 -23.82446 -22.27830 -22.07608 -21.25946 -20.10207 -18.12516 -17.61668 -17.33105 -17.05561 -16.86404 -16.49685 -16.31320 -15.97864 -15.30324 -15.21009 -14.59112 -14.53839 -14.41566 -14.11777 -13.79335 -13.58924 -13.45889 -13.03371 -12.81133 -12.52148 -12.36818 -12.08462 -12.01987 -11.83218 -11.70081 -11.58083 -11.51056 -11.31616 -11.30360 -11.02404 -10.75371 -10.48408 -10.18060 -9.92260 -9.77819 -9.63763 -9.24923 -8.71811 -8.22383 -6.95884 -6.45245 -4.03600 2.05689 2.19097 2.70914 2.82685 3.12581 3.14282 3.16708 3.27859 3.84716 3.96408 4.44737 4.51335 4.58652 4.61501 4.72934 4.78322 4.83230 4.87148 4.92330 4.95783 5.05256 5.08725 5.14435 5.20407 5.29653 5.31975 5.48693 5.54077 5.55968 5.65269 5.71191 5.77406 6.12470 6.20214 6.26257 6.62755 6.79234 6.82560 6.85362 6.96176 7.13972 7.20620 7.39267 7.66477 7.76725 7.98925 8.30653 8.99851 9.69951 10.72561 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.045054 B = 0.001473 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.331875 B =18998.526270 C =19213.043470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.064 3.936 4 C -0.119 4.119 5 C 0.068 3.932 6 O -0.390 6.390 7 C 0.078 3.922 8 C -0.137 4.137 9 C 0.509 3.491 10 O -0.530 6.530 11 N -0.658 5.658 12 C 0.031 3.969 13 C -0.088 4.088 14 C -0.220 4.220 15 C 0.148 3.852 16 O -0.176 6.176 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.180 4.180 26 C -0.067 4.067 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.403 0.597 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.271 0.729 44 H 0.121 0.879 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.425 -21.905 1.462 28.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.013 4.013 4 C -0.156 4.156 5 C -0.009 4.009 6 O -0.310 6.310 7 C 0.002 3.998 8 C -0.177 4.177 9 C 0.296 3.704 10 O -0.406 6.406 11 N -0.303 5.303 12 C -0.061 4.061 13 C -0.109 4.109 14 C -0.240 4.240 15 C 0.093 3.907 16 O -0.079 6.079 17 C -0.469 4.469 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.200 4.200 26 C -0.087 4.087 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.238 0.762 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.081 0.919 44 H 0.139 0.861 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.669 -21.035 1.557 28.168 hybrid contribution 0.743 0.034 -0.611 0.962 sum -17.927 -21.001 0.946 27.627 Atomic orbital electron populations 1.22764 0.80693 1.02938 1.00120 1.87867 1.19953 1.27798 1.95461 1.22375 0.93488 0.84885 1.00558 1.21366 0.92643 0.96854 1.04777 1.22273 0.81114 0.96785 1.00711 1.87770 1.17857 1.29749 1.95631 1.22128 0.90672 0.84994 1.02044 1.21442 0.94697 0.95913 1.05691 1.20404 0.82377 0.90989 0.76598 1.90718 1.66240 1.34992 1.48661 1.43182 1.05973 1.08500 1.72637 1.17266 0.96330 0.85780 1.06748 1.20491 0.94889 0.97426 0.98053 1.20974 1.03157 0.92153 1.07739 1.19426 0.91214 0.86638 0.93376 1.83987 1.38009 1.26397 1.59527 1.21272 1.02693 0.95808 1.27154 0.89109 1.25286 0.99307 0.94131 0.97743 1.70038 1.39477 0.98878 1.41248 0.85786 0.80053 0.77926 0.79687 1.19505 1.20267 1.19495 1.20153 0.95398 0.98084 1.06325 1.20738 0.99107 0.91084 0.97751 0.93940 0.93944 0.89468 0.92988 0.92974 0.90142 0.90149 0.92954 0.92953 0.92190 0.92156 0.87953 0.88007 0.76217 0.87120 0.85089 0.91944 0.86124 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.19 10.70 -35.23 -0.38 -3.56 16 3 C 0.06 0.41 5.94 37.16 0.22 0.63 16 4 C -0.12 -0.85 5.95 -26.73 -0.16 -1.01 16 5 C 0.07 0.52 5.94 37.16 0.22 0.74 16 6 O -0.39 -3.84 10.34 -35.23 -0.36 -4.20 16 7 C 0.08 0.79 5.23 37.16 0.19 0.98 16 8 C -0.14 -1.26 6.07 -27.89 -0.17 -1.43 16 9 C 0.51 6.78 7.67 -10.99 -0.08 6.69 16 10 O -0.53 -9.17 13.42 5.55 0.07 -9.09 16 11 N -0.66 -8.65 5.34 -9.83 -0.05 -8.70 16 12 C 0.03 0.54 6.30 -83.63 -0.53 0.02 16 13 C -0.09 -1.57 9.96 -39.41 -0.39 -1.96 16 14 C -0.22 -4.70 9.16 -39.42 -0.36 -5.06 16 15 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 16 O -0.18 -5.04 9.75 0.04 0.00 -5.04 16 17 C -0.39 -10.93 9.48 30.88 0.29 -10.63 16 18 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 21 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.18 -3.96 9.98 -39.42 -0.39 -4.35 16 26 C -0.07 -1.31 8.69 -39.41 -0.34 -1.66 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.40 3.74 8.82 -40.82 -0.36 3.38 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 2.76 5.63 -52.49 -0.30 2.46 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 45 H 0.13 2.46 6.23 -52.49 -0.33 2.13 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -33.96 383.70 -6.67 -40.64 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.73 Total: 4.80 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -0.74 Total: -11.46 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.71 Total: -33.20 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.67 Total: -21.89 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.96 -6.67 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333777992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.947 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds