Wall clock time and date at job start Tue Mar 31 2020 14:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99817 * 2 1 4 4 C 1.52999 * 109.46917 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46758 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.46889 * 180.02562 * 5 4 3 7 7 C 1.42905 * 113.99836 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47100 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47013 * 179.97438 * 8 7 6 10 10 O 1.21288 * 120.00547 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00115 * 180.02562 * 9 8 7 12 12 C 1.39981 * 120.00350 * 175.49199 * 11 9 8 13 13 C 1.38922 * 120.00283 * 215.12488 * 12 11 9 14 14 C 1.38008 * 120.00014 * 180.02562 * 13 12 11 15 15 C 1.38910 * 119.99976 * 0.02562 * 14 13 12 16 16 O 1.35774 * 119.99471 * 179.97438 * 15 14 13 17 17 C 1.34808 * 117.00313 * 5.34797 * 16 15 14 18 18 H 1.08002 * 120.00230 * 354.95457 * 17 16 15 19 19 C 1.38633 * 120.00210 * 174.96513 * 17 16 15 20 20 N 1.31575 * 119.99815 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00323 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47187 * 59.99558 * 21 19 17 23 23 H 1.48503 * 109.47384 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46741 * 299.99567 * 21 19 17 25 25 C 1.38907 * 120.00174 * 0.25692 * 15 14 13 26 26 C 1.37999 * 120.00277 * 359.44446 * 25 15 14 27 27 H 1.08998 * 109.47484 * 299.99940 * 1 2 3 28 28 H 1.09006 * 109.46752 * 60.00098 * 1 2 3 29 29 H 1.09006 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46990 * 60.00033 * 3 2 1 31 31 H 1.08991 * 109.47303 * 300.00158 * 3 2 1 32 32 H 1.08998 * 109.47075 * 60.01135 * 4 3 2 33 33 H 1.08991 * 109.47655 * 300.00423 * 4 3 2 34 34 H 1.09003 * 109.47173 * 60.00499 * 5 4 3 35 35 H 1.09000 * 109.47078 * 300.00325 * 5 4 3 36 36 H 1.08994 * 109.47087 * 60.00062 * 7 6 5 37 37 H 1.08996 * 109.46962 * 299.99996 * 7 6 5 38 38 H 1.09008 * 109.46923 * 60.00107 * 8 7 6 39 39 H 1.08997 * 109.46957 * 300.00240 * 8 7 6 40 40 H 0.97001 * 119.99577 * 355.49141 * 11 9 8 41 41 H 1.07997 * 119.99847 * 359.97438 * 13 12 11 42 42 H 1.07994 * 119.99782 * 179.97438 * 14 13 12 43 43 H 0.97000 * 119.99968 * 180.02562 * 20 19 17 44 44 H 1.08008 * 119.99608 * 179.70477 * 25 15 14 45 45 H 1.07999 * 119.99955 * 180.28029 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 8 5.5822 2.4697 0.0013 7 6 6.2647 3.7253 0.0025 8 6 7.7756 3.4845 0.0030 9 6 8.4952 4.8085 0.0036 10 8 7.8621 5.8430 0.0041 11 7 9.8426 4.8432 0.0036 12 6 10.5112 6.0693 -0.0911 13 6 11.7089 6.1553 -0.7897 14 6 12.3684 7.3641 -0.8827 15 6 11.8348 8.4947 -0.2772 16 8 12.4839 9.6837 -0.3682 17 6 13.5805 9.7241 -1.1512 18 1 13.9529 8.8181 -1.6060 19 6 14.2304 10.9285 -1.3724 20 7 13.7766 12.0323 -0.8185 21 14 15.7504 10.9843 -2.4567 22 1 15.4038 10.5080 -3.8200 23 1 16.2530 12.3796 -2.5333 24 1 16.8026 10.1096 -1.8795 25 6 10.6402 8.4075 0.4264 26 6 9.9776 7.2002 0.5141 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8574 0.6438 -0.8892 33 1 3.8567 0.6439 0.8907 34 1 3.8357 3.1232 0.8913 35 1 3.8363 3.1237 -0.8887 36 1 5.9867 4.2890 0.8929 37 1 5.9868 4.2906 -0.8870 38 1 8.0540 2.9204 -0.8873 39 1 8.0531 2.9192 0.8927 40 1 10.3490 4.0184 0.0693 41 1 12.1244 5.2760 -1.2594 42 1 13.2996 7.4308 -1.4254 43 1 14.2311 12.8751 -0.9735 44 1 10.2278 9.2856 0.9012 45 1 9.0465 7.1335 1.0573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333777992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:41 Heat of formation + Delta-G solvation = -157.681047 kcal Electronic energy + Delta-G solvation = -25218.940472 eV Core-core repulsion = 21201.582564 eV Total energy + Delta-G solvation = -4017.357908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.53286 -40.40792 -39.33667 -38.66572 -38.10370 -35.41367 -34.25642 -34.10216 -32.27880 -31.86992 -29.47273 -27.94386 -27.33851 -25.86315 -24.78568 -23.87771 -22.86498 -22.50913 -21.32929 -19.88302 -18.97431 -18.59797 -18.02754 -17.68168 -17.49532 -16.97722 -16.82548 -16.37113 -16.28045 -15.97526 -15.76616 -15.50801 -15.41377 -15.11473 -14.85176 -14.70891 -14.49741 -14.18501 -13.67207 -13.54408 -13.30349 -13.18090 -12.85496 -12.68186 -12.62372 -12.58968 -12.43003 -12.26396 -12.14695 -11.92152 -11.91797 -11.36687 -11.12803 -10.84794 -10.65253 -10.62262 -10.51073 -9.84744 -8.62260 -8.44897 -6.12741 0.51014 0.54501 1.37259 1.46721 1.53783 1.62594 1.90350 2.19806 2.51768 2.82912 3.15836 3.17479 3.52384 3.69591 3.91952 4.02513 4.07345 4.10555 4.11564 4.14433 4.30882 4.39683 4.45216 4.49486 4.51569 4.54195 4.55178 4.60180 4.66246 4.74457 4.83603 4.85249 4.86097 5.07275 5.09052 5.13040 5.19584 5.30803 5.46996 5.56578 5.68156 6.02845 6.12172 6.16712 6.21828 6.53399 6.99070 7.22194 7.79676 8.78098 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.045054 B = 0.001473 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.331875 B =18998.526270 C =19213.043470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.062 3.938 4 C -0.113 4.113 5 C 0.064 3.936 6 O -0.399 6.399 7 C 0.079 3.921 8 C -0.124 4.124 9 C 0.511 3.489 10 O -0.571 6.571 11 N -0.647 5.647 12 C 0.060 3.940 13 C -0.078 4.078 14 C -0.221 4.221 15 C 0.107 3.893 16 O -0.232 6.232 17 C -0.415 4.415 18 H 0.107 0.893 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.020 2.980 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.254 1.254 25 C -0.192 4.192 26 C -0.074 4.074 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.428 0.572 41 H 0.160 0.840 42 H 0.132 0.868 43 H 0.272 0.728 44 H 0.111 0.889 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.590 -25.683 0.555 31.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.014 4.014 4 C -0.151 4.151 5 C -0.013 4.013 6 O -0.318 6.318 7 C 0.001 3.999 8 C -0.163 4.163 9 C 0.300 3.700 10 O -0.450 6.450 11 N -0.294 5.294 12 C -0.034 4.034 13 C -0.098 4.098 14 C -0.241 4.241 15 C 0.056 3.944 16 O -0.139 6.139 17 C -0.491 4.491 18 H 0.124 0.876 19 C -0.221 4.221 20 N -0.561 5.561 21 Si 0.839 3.161 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.178 1.178 25 C -0.212 4.212 26 C -0.094 4.094 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.267 0.733 41 H 0.178 0.822 42 H 0.150 0.850 43 H 0.081 0.919 44 H 0.129 0.871 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.866 -24.919 0.664 31.262 hybrid contribution 0.474 0.898 -0.238 1.043 sum -18.392 -24.021 0.426 30.256 Atomic orbital electron populations 1.22936 0.79286 1.03881 1.00977 1.87821 1.21628 1.28739 1.95658 1.22423 0.92854 0.84602 1.01514 1.21299 0.93296 0.96385 1.04075 1.22404 0.80158 0.97219 1.01472 1.87744 1.18942 1.29486 1.95675 1.22068 0.91454 0.85045 1.01284 1.21394 0.93344 0.93399 1.08166 1.21167 0.82059 0.92012 0.74777 1.90721 1.67062 1.37004 1.50235 1.43132 1.06230 1.07781 1.72286 1.17404 0.95636 0.86832 1.03542 1.20868 0.94271 0.97607 0.97027 1.21142 1.03347 0.92549 1.07074 1.19891 0.92292 0.86811 0.95363 1.83954 1.39430 1.28761 1.61727 1.21843 1.02967 0.96834 1.27427 0.87599 1.26624 1.02915 0.93356 0.99204 1.70201 1.41966 0.99731 1.44157 0.84633 0.75496 0.78248 0.77746 1.18126 1.19912 1.17843 1.20276 0.95341 0.99074 1.06486 1.20868 0.99192 0.91085 0.98229 0.93054 0.93094 0.88604 0.91987 0.92039 0.90858 0.90793 0.92137 0.92268 0.92923 0.93196 0.85468 0.85260 0.73289 0.82229 0.85009 0.91897 0.87113 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.42 -6.32 10.70 -148.98 -1.59 -7.91 16 3 C 0.06 0.71 5.94 71.98 0.43 1.14 16 4 C -0.11 -1.46 5.95 30.60 0.18 -1.28 16 5 C 0.06 0.86 5.94 71.98 0.43 1.29 16 6 O -0.40 -6.86 10.34 -148.98 -1.54 -8.40 16 7 C 0.08 1.38 5.23 71.98 0.38 1.76 16 8 C -0.12 -1.75 6.07 29.85 0.18 -1.57 16 9 C 0.51 11.85 7.67 87.65 0.67 12.52 16 10 O -0.57 -18.76 13.42 -3.05 -0.04 -18.80 16 11 N -0.65 -14.22 5.34 -303.38 -1.62 -15.84 16 12 C 0.06 1.92 6.30 38.17 0.24 2.16 16 13 C -0.08 -2.51 9.96 22.38 0.22 -2.28 16 14 C -0.22 -9.30 9.16 22.38 0.20 -9.09 16 15 C 0.11 5.40 6.65 22.59 0.15 5.55 16 16 O -0.23 -14.11 9.75 -22.78 -0.22 -14.33 16 17 C -0.41 -23.98 9.48 67.91 0.64 -23.34 16 18 H 0.11 5.48 5.20 -2.91 -0.02 5.47 16 19 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 20 N -0.92 -56.98 13.67 21.61 0.30 -56.68 16 21 Si 1.02 42.36 29.55 68.60 2.03 44.39 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 25 C -0.19 -8.78 9.98 22.37 0.22 -8.55 16 26 C -0.07 -2.85 8.69 22.38 0.19 -2.66 16 27 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 37 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 38 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.43 5.51 8.82 -92.71 -0.82 4.70 16 41 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 42 H 0.13 5.45 5.63 -2.91 -0.02 5.44 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 45 H 0.13 5.05 6.23 -2.91 -0.02 5.04 16 Total: -1.00 -79.25 383.70 3.35 -75.90 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.18 Total: 25.44 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 5.86 Total: -23.77 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -1.32 Total: -72.52 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -3.40 Total: -49.44 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -79.25 3.35 -75.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333777992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.780 kcal (2) G-P(sol) polarization free energy of solvation -79.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds